Wall clock time and date at job start Tue Mar 31 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47459 * 2 1 4 4 C 1.53000 * 109.46971 * 120.00266 * 2 1 3 5 5 C 1.53006 * 109.47486 * 64.99795 * 4 2 1 6 6 C 1.50694 * 109.47013 * 180.02562 * 5 4 2 7 7 N 1.29021 * 124.91800 * 90.00403 * 6 5 4 8 8 C 1.31783 * 117.13075 * 179.97438 * 7 6 5 9 9 C 1.50695 * 122.75640 * 179.97438 * 8 7 6 10 10 S 1.81391 * 109.47313 * 89.99891 * 9 8 7 11 11 O 1.42105 * 108.57942 * 294.48966 * 10 9 8 12 12 O 1.42097 * 108.57959 * 65.51495 * 10 9 8 13 13 C 1.81398 * 101.92304 * 180.02562 * 10 9 8 14 14 C 1.53004 * 109.47358 * 179.97438 * 13 10 9 15 15 C 1.52996 * 109.47083 * 179.97438 * 14 13 10 16 16 C 1.50702 * 109.47050 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99913 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00052 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00118 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99995 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47022 * 90.00358 * 20 18 16 22 22 H 1.48496 * 109.46938 * 210.00118 * 20 18 16 23 23 H 1.48498 * 109.47230 * 330.00165 * 20 18 16 24 24 C 1.33646 * 114.49504 * 0.23014 * 8 7 6 25 25 S 1.70979 * 124.91545 * 269.99474 * 6 5 4 26 26 H 1.09007 * 109.47025 * 60.00357 * 1 2 3 27 27 H 1.09001 * 109.47553 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47554 * 300.00255 * 1 2 3 29 29 H 1.09003 * 109.47088 * 239.99974 * 2 1 3 30 30 H 1.08996 * 109.47146 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47012 * 300.00390 * 3 2 1 32 32 H 1.09003 * 109.46991 * 59.99915 * 3 2 1 33 33 H 1.09003 * 109.47063 * 304.99782 * 4 2 1 34 34 H 1.09001 * 109.47159 * 185.00031 * 4 2 1 35 35 H 1.08994 * 109.46732 * 59.99833 * 5 4 2 36 36 H 1.09003 * 109.46665 * 299.99998 * 5 4 2 37 37 H 1.09003 * 109.46853 * 329.99374 * 9 8 7 38 38 H 1.09003 * 109.47076 * 210.00618 * 9 8 7 39 39 H 1.08998 * 109.47096 * 300.00087 * 13 10 9 40 40 H 1.09006 * 109.47169 * 59.99793 * 13 10 9 41 41 H 1.08998 * 109.47355 * 300.00255 * 14 13 10 42 42 H 1.09001 * 109.46568 * 60.00607 * 14 13 10 43 43 H 1.08998 * 109.47486 * 300.00485 * 15 14 13 44 44 H 1.09010 * 109.46803 * 60.00788 * 15 14 13 45 45 H 0.97003 * 119.99993 * 179.97438 * 19 18 16 46 46 H 1.07997 * 126.03396 * 179.76654 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6351 -2.1956 1.1880 6 6 2.1369 -2.9058 2.4187 7 7 1.4786 -3.0264 3.5218 8 6 2.0658 -3.6806 4.5036 9 6 1.4134 -3.8956 5.8449 10 16 0.4693 -5.4442 5.8168 11 8 -0.6036 -5.3038 4.8956 12 8 1.3781 -6.5258 5.6636 13 6 -0.2147 -5.4966 7.4960 14 6 -1.0601 -6.7609 7.6632 15 6 -1.6365 -6.8054 9.0797 16 6 -2.4686 -8.0510 9.2446 17 1 -2.5759 -8.7416 8.4212 18 6 -3.0937 -8.3084 10.4462 19 7 -3.8195 -9.3957 10.5903 20 14 -2.9086 -7.1136 11.8702 21 1 -3.9909 -6.0987 11.8086 22 1 -2.9980 -7.8553 13.1535 23 1 -1.5898 -6.4369 11.7804 24 6 3.2895 -4.1331 4.2140 25 16 3.6610 -3.6686 2.5554 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 2.0697 -2.6550 0.3003 36 1 0.5488 -2.2724 1.1421 37 1 0.7418 -3.0644 6.0596 38 1 2.1806 -3.9516 6.6172 39 1 0.6000 -5.5055 8.2201 40 1 -0.8386 -4.6183 7.6618 41 1 -1.8748 -6.7517 6.9392 42 1 -0.4365 -7.6394 7.4974 43 1 -0.8215 -6.8148 9.8035 44 1 -2.2600 -5.9268 9.2460 45 1 -4.2590 -9.5770 11.4358 46 1 3.9359 -4.6868 4.8787 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060375672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:54 Heat of formation + Delta-G solvation = -59.944897 kcal Electronic energy + Delta-G solvation = -24834.082507 eV Core-core repulsion = 21170.018776 eV Total energy + Delta-G solvation = -3664.063731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.32375 -37.44041 -36.82819 -35.88115 -34.79578 -33.53068 -32.21559 -30.81008 -28.60791 -28.09526 -27.57584 -25.69442 -23.67697 -22.50480 -20.50565 -20.39954 -20.05338 -18.84085 -18.12505 -16.97529 -16.66825 -16.20800 -15.93704 -15.80470 -15.46903 -15.05897 -14.50543 -14.46207 -14.26912 -14.17172 -13.87201 -13.62164 -13.20052 -12.89954 -12.81520 -12.62922 -12.36047 -12.27334 -12.15278 -11.91105 -11.85630 -11.82537 -11.75215 -11.57882 -11.38041 -11.09413 -11.04809 -10.98399 -10.94434 -10.91887 -10.07330 -9.96602 -9.85923 -9.74365 -9.61399 -9.26262 -8.98679 -8.57976 -6.07480 -4.06716 -0.11242 0.41586 0.97882 1.33744 2.40840 2.83421 3.27066 3.34467 3.36248 3.41863 3.78562 4.02793 4.22464 4.40846 4.40870 4.42234 4.52741 4.63015 4.80305 4.88419 5.00377 5.00592 5.04213 5.08277 5.16919 5.22170 5.24494 5.26169 5.29969 5.41472 5.51074 5.58785 5.61340 5.71428 5.74740 5.76676 5.93234 5.97447 6.17439 6.27821 6.68544 7.13612 7.27418 7.36406 7.71752 8.48819 8.97257 9.53431 11.05792 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.001988 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.460408 B =14079.318810 C =14752.880491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.109 4.109 5 C -0.048 4.048 6 C 0.056 3.944 7 N -0.457 5.457 8 C 0.072 3.928 9 C -0.546 4.546 10 S 2.408 3.592 11 O -0.925 6.925 12 O -0.934 6.934 13 C -0.597 4.597 14 C -0.097 4.097 15 C -0.005 4.005 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.242 4.242 25 S 0.134 5.866 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.020 0.980 44 H 0.016 0.984 45 H 0.264 0.736 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.744 21.431 -19.777 34.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.089 4.089 6 C -0.223 4.223 7 N -0.171 5.171 8 C -0.061 4.061 9 C -0.673 4.673 10 S 2.590 3.410 11 O -0.922 6.922 12 O -0.931 6.931 13 C -0.729 4.729 14 C -0.136 4.136 15 C -0.044 4.044 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.383 4.383 25 S 0.390 5.610 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 17.895 20.841 -21.009 34.582 hybrid contribution -0.225 1.006 2.535 2.737 sum 17.670 21.847 -18.474 33.627 Atomic orbital electron populations 1.21931 0.94887 1.02258 1.01943 1.21112 0.96271 0.96243 0.97795 1.21836 1.00889 0.95853 1.01938 1.21680 1.01102 0.93042 0.98977 1.20437 1.03316 0.94542 0.90580 1.27090 0.94820 1.02093 0.98297 1.66017 1.34732 1.16864 0.99492 1.18965 0.92124 1.00576 0.94388 1.29130 1.14461 1.25116 0.98612 1.08641 0.76486 0.76609 0.79239 1.93590 1.53154 1.85635 1.59862 1.93566 1.64863 1.48890 1.85814 1.30366 1.11924 1.09675 1.20885 1.21338 0.97954 0.91738 1.02550 1.19554 0.96133 0.97841 0.90866 1.21134 1.29486 1.06032 0.99809 0.90701 1.25028 0.94649 0.95209 0.98551 1.69913 1.32497 1.25732 1.25713 0.86777 0.79067 0.81417 0.82003 1.20208 1.21272 1.19054 1.26990 1.01275 1.09727 1.00312 1.83947 1.19140 1.49211 1.08677 0.92687 0.92155 0.92447 0.90968 0.92718 0.92564 0.92607 0.91009 0.91625 0.89364 0.88006 0.83242 0.83583 0.85247 0.85162 0.90774 0.90791 0.96139 0.96553 0.92635 0.79612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.95 37.16 0.33 -0.54 16 2 C -0.10 -0.50 2.92 -90.62 -0.26 -0.76 16 3 C -0.15 -0.72 9.19 37.16 0.34 -0.38 16 4 C -0.11 -0.68 4.66 -26.73 -0.12 -0.80 16 5 C -0.05 -0.35 5.55 -27.88 -0.15 -0.51 16 6 C 0.06 0.58 6.64 -13.46 -0.09 0.49 16 7 N -0.46 -5.94 10.53 -8.06 -0.08 -6.03 16 8 C 0.07 0.89 6.00 -84.22 -0.51 0.38 16 9 C -0.55 -5.59 6.23 36.00 0.22 -5.36 16 10 S 2.41 34.37 4.70 -107.50 -0.51 33.87 16 11 O -0.93 -16.72 18.10 -57.83 -1.05 -17.77 16 12 O -0.93 -15.82 18.10 -57.83 -1.05 -16.87 16 13 C -0.60 -8.34 5.81 37.16 0.22 -8.13 16 14 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 15 C -0.01 -0.12 4.04 -27.88 -0.11 -0.24 16 16 C -0.53 -15.09 9.66 -34.44 -0.33 -15.43 16 17 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 20 Si 0.88 21.42 27.47 -169.99 -4.67 16.76 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 24 C -0.24 -2.54 11.13 29.12 0.32 -2.22 16 25 S 0.13 1.18 23.18 -107.50 -2.49 -1.31 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.80 6.56 -51.93 -0.34 0.46 16 37 H 0.15 1.26 8.14 -51.92 -0.42 0.84 16 38 H 0.15 0.95 8.12 -51.92 -0.42 0.53 16 39 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.13 1.50 8.14 -51.92 -0.42 1.08 16 41 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 44 H 0.02 0.37 7.57 -51.92 -0.39 -0.03 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -37.59 402.56 -11.18 -48.78 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.80 Total: -2.79 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: -0.38 Total: -33.68 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.69 Total: -33.05 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -2.09 Total: -34.63 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 35.56 SS G_CDS: -3.00 Total: 32.56 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.59 -11.18 -48.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060375672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.169 kcal (2) G-P(sol) polarization free energy of solvation -37.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds