Wall clock time and date at job start Tue Mar 31 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99942 * 2 1 4 4 H 1.48498 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47198 * 300.00221 * 3 2 1 6 6 H 1.48503 * 109.46983 * 60.00130 * 3 2 1 7 7 C 1.38814 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00035 * 164.74915 * 7 2 1 9 9 N 1.36940 * 119.99555 * 344.74538 * 7 2 1 10 10 C 1.46935 * 120.66028 * 127.55187 * 9 7 2 11 11 C 1.53639 * 108.50503 * 126.22791 * 10 9 7 12 12 C 1.53103 * 109.28126 * 55.03698 * 11 10 9 13 13 O 1.42900 * 109.83889 * 58.92374 * 12 11 10 14 14 C 1.53114 * 109.20130 * 179.09598 * 12 11 10 15 15 C 1.53008 * 109.33981 * 59.21444 * 14 12 11 16 16 C 1.52984 * 109.54249 * 60.09567 * 15 14 12 17 17 C 1.53016 * 109.53679 * 300.22491 * 16 15 14 18 18 C 1.52980 * 109.40957 * 59.82883 * 17 16 15 19 19 H 1.08999 * 109.49454 * 59.66191 * 18 17 16 20 20 C 1.46918 * 120.66512 * 307.82736 * 9 7 2 21 21 H 1.08992 * 109.57767 * 113.75872 * 20 9 7 22 22 C 1.50700 * 109.57837 * 353.36878 * 20 9 7 23 23 C 1.38254 * 119.92900 * 313.95105 * 22 20 9 24 24 C 1.38242 * 120.14039 * 179.97438 * 23 22 20 25 25 C 1.38540 * 120.02973 * 0.02601 * 24 23 22 26 26 C 1.39263 * 119.82933 * 359.97438 * 25 24 23 27 27 C 1.38231 * 119.92504 * 133.67086 * 22 20 9 28 28 O 1.36498 * 108.64023 * 180.02562 * 26 25 24 29 29 C 1.43991 * 105.48886 * 17.28064 * 28 26 25 30 30 O 1.36500 * 131.53088 * 179.97438 * 25 24 23 31 31 H 0.96998 * 119.99715 * 182.25763 * 1 2 3 32 32 H 1.08993 * 109.59138 * 246.06465 * 10 9 7 33 33 H 1.09003 * 109.58684 * 6.49657 * 10 9 7 34 34 H 1.09000 * 109.64163 * 295.02517 * 11 10 9 35 35 H 1.09004 * 109.41812 * 174.90719 * 11 10 9 36 36 H 0.96695 * 114.00132 * 59.71406 * 13 12 11 37 37 H 1.09003 * 109.49356 * 179.17271 * 14 12 11 38 38 H 1.08998 * 109.49339 * 299.24911 * 14 12 11 39 39 H 1.09007 * 109.45628 * 180.12117 * 15 14 12 40 40 H 1.09003 * 109.45870 * 300.06809 * 15 14 12 41 41 H 1.09004 * 109.45881 * 60.24265 * 16 15 14 42 42 H 1.08989 * 109.45999 * 180.19951 * 16 15 14 43 43 H 1.09001 * 109.47979 * 299.84477 * 17 16 15 44 44 H 1.09006 * 109.47807 * 179.80952 * 17 16 15 45 45 H 1.07996 * 119.92828 * 359.95580 * 23 22 20 46 46 H 1.07997 * 119.98129 * 179.97438 * 24 23 22 47 47 H 1.08001 * 119.99202 * 0.02562 * 27 22 20 48 48 H 1.09002 * 110.57066 * 91.44080 * 29 28 26 49 49 H 1.08994 * 110.57442 * 214.31854 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0617 -1.2185 -0.2466 9 7 1.3617 -2.3673 0.3110 10 6 1.4339 -3.5282 -0.5869 11 6 1.9146 -4.7420 0.2231 12 6 0.9934 -4.9415 1.4297 13 8 -0.3499 -5.1432 0.9861 14 6 1.4606 -6.1650 2.2230 15 6 2.9028 -5.9483 2.6858 16 6 2.9732 -4.7069 3.5770 17 6 2.4981 -3.4840 2.7895 18 6 1.0559 -3.7045 2.3294 19 1 0.4157 -3.8547 3.1987 20 6 0.5749 -2.4796 1.5466 21 1 -0.4800 -2.5959 1.2986 22 6 0.7663 -1.2398 2.3816 23 6 2.0364 -0.7309 2.5799 24 6 2.2170 0.4064 3.3446 25 6 1.1244 1.0391 3.9150 26 6 -0.1550 0.5265 3.7153 27 6 -0.3290 -0.6105 2.9428 28 8 -1.0504 1.3200 4.3724 29 6 -0.3520 2.5514 4.6358 30 8 1.0307 2.1534 4.6977 31 1 -0.4849 -0.8394 0.0331 32 1 0.4470 -3.7303 -1.0030 33 1 2.1378 -3.3231 -1.3934 34 1 2.9343 -4.5715 0.5683 35 1 1.8872 -5.6315 -0.4063 36 1 -0.4628 -5.9119 0.4105 37 1 0.8167 -6.3028 3.0916 38 1 1.4111 -7.0502 1.5890 39 1 3.2381 -6.8193 3.2491 40 1 3.5459 -5.8086 1.8169 41 1 2.3338 -4.8486 4.4483 42 1 4.0016 -4.5518 3.9030 43 1 3.1392 -3.3401 1.9198 44 1 2.5455 -2.6006 3.4264 45 1 2.8894 -1.2232 2.1366 46 1 3.2103 0.8015 3.4982 47 1 -1.3205 -1.0078 2.7830 48 1 -0.5104 3.2625 3.8251 49 1 -0.6709 2.9766 5.5874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061887002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:31 Heat of formation + Delta-G solvation = -61.649192 kcal Electronic energy + Delta-G solvation = -33827.169801 eV Core-core repulsion = 29720.668439 eV Total energy + Delta-G solvation = -4106.501362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.41756 -40.30176 -37.62317 -35.57259 -35.28316 -35.05527 -32.06086 -31.78378 -30.05458 -29.22810 -28.92745 -27.87894 -25.36322 -25.13700 -23.14494 -22.41535 -21.95315 -21.76616 -21.16042 -19.97592 -18.14995 -17.50940 -17.13522 -16.75149 -16.55432 -15.81499 -15.43117 -15.22389 -14.80275 -14.65669 -14.20734 -13.77612 -13.73660 -13.46853 -13.33110 -13.09635 -12.98312 -12.85218 -12.50615 -12.38412 -12.29696 -12.15443 -11.99926 -11.81666 -11.41880 -11.25439 -10.97456 -10.85662 -10.81711 -10.67709 -10.53130 -10.19748 -10.14794 -10.03871 -9.92011 -9.75083 -9.46558 -9.34576 -9.08457 -8.40288 -7.84321 -6.93992 -6.67081 -5.99524 -3.55040 2.08957 2.19998 3.44693 3.45728 3.50599 3.58915 4.08222 4.44978 4.52889 4.56167 4.90233 4.98879 5.18089 5.18282 5.26067 5.33108 5.35093 5.38965 5.43136 5.47143 5.56359 5.70480 5.78820 5.80699 5.85624 5.90207 5.99319 6.06201 6.08482 6.10900 6.21671 6.27490 6.32024 6.35156 6.36994 6.42179 6.49465 6.62676 6.72189 6.76457 6.80517 6.91092 6.93581 6.98048 7.06047 7.21779 7.34236 7.64160 7.98244 8.04672 8.15813 8.61690 9.09420 9.71943 10.32396 11.13911 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.005361 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.561698 B = 5221.590503 C = 6080.638475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.010 3.990 3 Si 1.048 2.952 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.350 4.350 8 H 0.045 0.955 9 N -0.589 5.589 10 C 0.156 3.844 11 C -0.163 4.163 12 C 0.146 3.854 13 O -0.554 6.554 14 C -0.142 4.142 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.116 4.116 18 C -0.075 4.075 19 H 0.062 0.938 20 C 0.226 3.774 21 H 0.044 0.956 22 C -0.032 4.032 23 C -0.050 4.050 24 C -0.135 4.135 25 C 0.022 3.978 26 C 0.003 3.997 27 C -0.065 4.065 28 O -0.319 6.319 29 C 0.216 3.784 30 O -0.321 6.321 31 H 0.276 0.724 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.365 0.635 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.073 0.927 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.357 -7.229 6.073 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.199 4.199 3 Si 0.877 3.123 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.479 4.479 8 H 0.063 0.937 9 N -0.313 5.313 10 C 0.030 3.970 11 C -0.202 4.202 12 C 0.106 3.894 13 O -0.358 6.358 14 C -0.180 4.180 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.096 4.096 19 H 0.080 0.920 20 C 0.120 3.880 21 H 0.061 0.939 22 C -0.033 4.033 23 C -0.069 4.069 24 C -0.154 4.154 25 C -0.022 4.022 26 C -0.041 4.041 27 C -0.085 4.085 28 O -0.236 6.236 29 C 0.104 3.896 30 O -0.238 6.238 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.211 0.789 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.163 0.837 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.091 0.909 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.005 -4.934 6.561 8.742 hybrid contribution 0.057 -1.797 -0.404 1.842 sum 3.062 -6.730 6.158 9.622 Atomic orbital electron populations 1.70668 1.06571 1.31280 1.43198 1.26068 0.96747 1.01438 0.95668 0.83745 0.75008 0.76393 0.77109 1.21247 1.22045 1.20685 1.19639 0.92969 0.85673 1.49584 0.93743 1.43969 1.59876 1.10629 1.16864 1.20948 0.97702 0.86365 0.91975 1.22872 1.00391 0.99537 0.97406 1.21067 0.81581 0.93721 0.93065 1.86607 1.28016 1.51546 1.69652 1.22273 0.97237 0.98077 1.00445 1.21523 0.96272 0.97793 0.99735 1.21613 1.00683 0.95338 0.98308 1.21883 0.95816 0.97196 1.00421 1.21403 0.97025 0.94338 0.96802 0.91980 1.19332 0.94990 0.88106 0.85533 0.93860 1.19213 0.91745 0.96820 0.95508 1.20851 0.98475 0.94021 0.93579 1.19898 0.95948 0.98444 1.01113 1.19612 0.95213 0.90160 0.97214 1.19404 0.86536 0.97344 1.00770 1.19636 0.99217 0.93645 0.95983 1.87237 1.37077 1.26045 1.73193 1.25367 0.74762 0.87476 1.02041 1.87231 1.28312 1.42780 1.65485 0.91256 0.96039 0.92671 0.90706 0.93279 0.78913 0.91796 0.92515 0.92697 0.91660 0.92540 0.92360 0.90353 0.90573 0.83732 0.86370 0.86594 0.90926 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.68 12.08 55.49 0.67 -24.01 16 2 C 0.01 0.25 3.30 -17.43 -0.06 0.19 16 3 Si 1.05 24.85 27.98 -169.99 -4.76 20.09 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.35 -8.64 6.42 -15.06 -0.10 -8.74 16 8 H 0.05 1.14 7.87 -52.49 -0.41 0.73 16 9 N -0.59 -13.02 1.92 -165.86 -0.32 -13.34 16 10 C 0.16 3.06 6.31 -3.47 -0.02 3.03 16 11 C -0.16 -2.55 4.37 -26.35 -0.12 -2.67 16 12 C 0.15 2.25 0.73 -90.46 -0.07 2.18 16 13 O -0.55 -8.87 11.82 -35.23 -0.42 -9.28 16 14 C -0.14 -1.81 5.09 -26.67 -0.14 -1.95 16 15 C -0.12 -1.39 5.64 -26.74 -0.15 -1.54 16 16 C -0.12 -1.60 5.92 -26.73 -0.16 -1.75 16 17 C -0.12 -1.86 3.41 -26.73 -0.09 -1.95 16 18 C -0.08 -1.32 1.79 -90.53 -0.16 -1.48 16 19 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 20 C 0.23 4.76 1.58 -68.79 -0.11 4.65 16 21 H 0.04 1.04 7.27 -51.93 -0.38 0.66 16 22 C -0.03 -0.69 2.40 -104.62 -0.25 -0.94 16 23 C -0.05 -1.05 3.73 -39.57 -0.15 -1.19 16 24 C -0.14 -2.79 8.93 -39.47 -0.35 -3.14 16 25 C 0.02 0.47 7.15 -39.09 -0.28 0.19 16 26 C 0.00 0.07 7.15 -39.08 -0.28 -0.21 16 27 C -0.07 -1.46 9.05 -39.47 -0.36 -1.82 16 28 O -0.32 -6.45 11.40 -45.68 -0.52 -6.97 16 29 C 0.22 3.61 8.89 101.05 0.90 4.50 16 30 O -0.32 -6.31 11.40 -45.69 -0.52 -6.84 16 31 H 0.28 7.87 6.66 -40.82 -0.27 7.60 16 32 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 33 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 34 H 0.07 1.19 4.71 -51.93 -0.24 0.95 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.37 4.33 9.05 45.56 0.41 4.75 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.06 0.80 6.39 -51.93 -0.33 0.46 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.70 8.14 -51.94 -0.42 0.27 16 43 H 0.08 1.36 5.64 -51.93 -0.29 1.07 16 44 H 0.08 1.29 5.26 -51.93 -0.27 1.02 16 45 H 0.15 3.00 5.22 -52.49 -0.27 2.72 16 46 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 47 H 0.12 2.53 7.99 -52.49 -0.42 2.11 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -29.31 352.96 -8.80 -38.11 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.33 Total: 9.55 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.93 Total: -12.64 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.35 Total: -37.35 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.46 Total: -23.09 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.76 Total: 20.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.31 -8.80 -38.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061887002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.535 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds