Wall clock time and date at job start Tue Mar 31 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00490 * 2 1 4 4 H 1.48502 * 109.47148 * 240.00053 * 3 2 1 5 5 H 1.48501 * 109.46813 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47026 * 120.00021 * 3 2 1 7 7 C 1.38812 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00017 * 193.70962 * 7 2 1 9 9 N 1.36944 * 120.00245 * 13.71172 * 7 2 1 10 10 C 1.47179 * 120.81679 * 30.40299 * 9 7 2 11 11 C 1.53175 * 108.81598 * 126.21606 * 10 9 7 12 12 C 1.53097 * 109.35957 * 54.81896 * 11 10 9 13 13 O 1.42897 * 109.79211 * 59.05654 * 12 11 10 14 14 C 1.53110 * 109.23462 * 179.19363 * 12 11 10 15 15 C 1.53010 * 109.34999 * 59.32730 * 14 12 11 16 16 C 1.52979 * 109.53952 * 60.08586 * 15 14 12 17 17 C 1.53023 * 109.52553 * 300.20153 * 16 15 14 18 18 C 1.52969 * 109.40613 * 59.85283 * 17 16 15 19 19 H 1.09000 * 109.46518 * 59.65022 * 18 17 16 20 20 C 1.46915 * 120.66252 * 210.27420 * 9 7 2 21 21 H 1.09005 * 109.57193 * 353.47960 * 20 9 7 22 22 C 1.50690 * 109.57436 * 113.73204 * 20 9 7 23 23 C 1.38264 * 119.92812 * 345.84522 * 22 20 9 24 24 C 1.38233 * 120.14345 * 179.97438 * 23 22 20 25 25 C 1.38549 * 120.02758 * 0.02858 * 24 23 22 26 26 C 1.39268 * 119.83130 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.93169 * 165.89515 * 22 20 9 28 28 O 1.36502 * 108.63590 * 179.75109 * 26 25 24 29 29 C 1.43825 * 105.57614 * 343.08108 * 28 26 25 30 30 O 1.36499 * 131.52681 * 180.02562 * 25 24 23 31 31 H 0.97005 * 119.99408 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.54881 * 6.42157 * 10 9 7 33 33 H 1.09001 * 109.57082 * 246.02179 * 10 9 7 34 34 H 1.09008 * 109.48399 * 294.85561 * 11 10 9 35 35 H 1.08989 * 109.49118 * 174.78790 * 11 10 9 36 36 H 0.96703 * 113.99704 * 59.71683 * 13 12 11 37 37 H 1.08996 * 109.48804 * 299.37282 * 14 12 11 38 38 H 1.08997 * 109.52169 * 179.30391 * 14 12 11 39 39 H 1.08999 * 109.45697 * 300.06543 * 15 14 12 40 40 H 1.08999 * 109.44687 * 180.09987 * 15 14 12 41 41 H 1.09002 * 109.46466 * 180.18132 * 16 15 14 42 42 H 1.09004 * 109.46630 * 60.21583 * 16 15 14 43 43 H 1.09004 * 109.47841 * 299.86810 * 17 16 15 44 44 H 1.09000 * 109.49291 * 179.84340 * 17 16 15 45 45 H 1.07998 * 119.92662 * 0.02672 * 23 22 20 46 46 H 1.07991 * 119.98771 * 180.02562 * 24 23 22 47 47 H 1.08003 * 119.98371 * 359.96963 * 27 22 20 48 48 H 1.08997 * 110.36203 * 268.27778 * 29 28 26 49 49 H 1.09005 * 110.70766 * 145.45281 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0671 -1.2155 0.2222 9 7 1.3547 -2.3714 -0.2801 10 6 0.1945 -2.3868 -1.1855 11 6 0.4429 -3.4193 -2.2893 12 6 0.7564 -4.7763 -1.6537 13 8 -0.3364 -5.1892 -0.8308 14 6 0.9844 -5.8106 -2.7594 15 6 2.1490 -5.3595 -3.6433 16 6 3.4160 -5.2335 -2.7953 17 6 3.1878 -4.2063 -1.6843 18 6 2.0236 -4.6614 -0.8027 19 1 2.2569 -5.6322 -0.3655 20 6 1.7970 -3.6397 0.3150 21 1 2.7277 -3.4824 0.8602 22 6 0.7392 -4.1505 1.2589 23 6 -0.2808 -3.3127 1.6705 24 6 -1.2537 -3.7767 2.5359 25 6 -1.2084 -5.0837 2.9935 26 6 -0.1810 -5.9276 2.5790 27 6 0.7912 -5.4553 1.7123 28 8 -0.3545 -7.1473 3.1668 29 6 -1.2681 -6.9251 4.2552 30 8 -2.0291 -5.7766 3.8359 31 1 -0.4849 0.8401 -0.0004 32 1 0.0658 -1.4000 -1.6303 33 1 -0.7013 -2.6576 -0.6266 34 1 1.2865 -3.1009 -2.9018 35 1 -0.4470 -3.5065 -2.9126 36 1 -1.1733 -5.2826 -1.3062 37 1 0.0823 -5.9008 -3.3645 38 1 1.2202 -6.7761 -2.3119 39 1 1.9131 -4.3934 -4.0895 40 1 2.3115 -6.0939 -4.4322 41 1 4.2441 -4.9090 -3.4255 42 1 3.6543 -6.2006 -2.3524 43 1 2.9521 -3.2384 -2.1269 44 1 4.0900 -4.1190 -1.0788 45 1 -0.3179 -2.2938 1.3145 46 1 -2.0495 -3.1203 2.8554 47 1 1.5893 -6.1075 1.3894 48 1 -0.7201 -6.7083 5.1721 49 1 -1.9208 -7.7872 4.3926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061887003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:37 Heat of formation + Delta-G solvation = -59.836485 kcal Electronic energy + Delta-G solvation = -33408.267994 eV Core-core repulsion = 29301.845236 eV Total energy + Delta-G solvation = -4106.422757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.60645 -40.18949 -37.28748 -35.78439 -35.14936 -35.08727 -32.42015 -31.14388 -29.88879 -29.55832 -29.03894 -28.05706 -25.71762 -24.70727 -23.27280 -22.42408 -21.85428 -21.66348 -21.55841 -19.92921 -17.95699 -17.31053 -17.06803 -16.85940 -16.55096 -15.84538 -15.53321 -15.10051 -14.80462 -14.47330 -14.28472 -13.96825 -13.82968 -13.40079 -13.24372 -13.14303 -12.88981 -12.83076 -12.53568 -12.51672 -12.31990 -12.00238 -11.77119 -11.56825 -11.38811 -11.23117 -10.89024 -10.80454 -10.70920 -10.62283 -10.51160 -10.32800 -10.15764 -10.10557 -9.98124 -9.87395 -9.64497 -9.27675 -8.92382 -8.49372 -8.01620 -7.21737 -6.70162 -5.84552 -3.30553 1.94955 2.04255 3.27990 3.35960 3.41868 3.43046 3.89164 4.38987 4.45955 4.67572 4.93112 4.99390 5.03665 5.11607 5.16583 5.27363 5.33706 5.39285 5.52029 5.56031 5.64521 5.70562 5.74417 5.84281 5.85256 5.91624 6.01069 6.03554 6.13904 6.24099 6.27136 6.30668 6.37617 6.40028 6.41848 6.52777 6.57563 6.58097 6.77425 6.81424 6.83053 6.89215 7.00560 7.08179 7.38655 7.40963 7.54653 7.69565 7.76903 7.88716 8.26064 8.41790 9.17287 9.77509 10.36912 11.22843 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009281 B = 0.005662 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.184088 B = 4944.013778 C = 7031.307652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.010 3.990 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.574 5.574 10 C 0.171 3.829 11 C -0.169 4.169 12 C 0.146 3.854 13 O -0.540 6.540 14 C -0.142 4.142 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.109 4.109 18 C -0.073 4.073 19 H 0.063 0.937 20 C 0.213 3.787 21 H 0.074 0.926 22 C -0.042 4.042 23 C -0.075 4.075 24 C -0.109 4.109 25 C 0.005 3.995 26 C 0.013 3.987 27 C -0.084 4.084 28 O -0.320 6.320 29 C 0.215 3.785 30 O -0.320 6.320 31 H 0.256 0.744 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.359 0.641 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.172 0.828 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.072 0.928 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -11.597 -1.386 11.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.294 5.294 10 C 0.046 3.954 11 C -0.208 4.208 12 C 0.106 3.894 13 O -0.344 6.344 14 C -0.180 4.180 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.147 4.147 18 C -0.093 4.093 19 H 0.082 0.918 20 C 0.104 3.896 21 H 0.092 0.908 22 C -0.045 4.045 23 C -0.093 4.093 24 C -0.128 4.128 25 C -0.039 4.039 26 C -0.031 4.031 27 C -0.103 4.103 28 O -0.237 6.237 29 C 0.103 3.897 30 O -0.237 6.237 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.205 0.795 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.189 0.811 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.089 0.911 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.956 -11.562 -0.901 11.636 hybrid contribution -0.258 0.498 -0.263 0.620 sum 0.697 -11.064 -1.164 11.147 Atomic orbital electron populations 1.69915 1.05116 1.25778 1.53662 1.25059 0.95300 0.98213 1.00378 0.86392 0.78903 0.83469 0.78065 1.21127 1.21752 1.20947 1.19105 0.91533 0.83970 1.43584 0.91756 1.44047 1.34493 1.01765 1.49123 1.20869 0.89133 0.96839 0.88606 1.22927 1.00467 0.97162 1.00243 1.20993 0.87321 0.92021 0.89113 1.86772 1.19117 1.90428 1.38069 1.22281 0.98275 0.99640 0.97838 1.21517 0.95046 1.01291 0.97527 1.21565 0.97042 0.99463 0.97578 1.21552 0.97147 0.99692 0.96259 1.21448 0.92895 0.98752 0.96196 0.91829 1.19437 0.93747 0.86726 0.89663 0.90837 1.20441 0.97464 0.91195 0.95419 1.21530 0.91491 1.02623 0.93650 1.20123 1.01361 0.90505 1.00766 1.19734 0.91450 0.94427 0.98252 1.19614 0.98438 0.83166 1.01851 1.19731 0.96848 0.95632 0.98099 1.87226 1.63812 1.27779 1.44834 1.25352 0.86021 0.88516 0.89860 1.87279 1.37951 1.36350 1.62103 0.93433 0.89824 0.94977 0.91320 0.93618 0.79512 0.92625 0.92111 0.91500 0.92881 0.92484 0.92697 0.89788 0.92239 0.81106 0.86229 0.86547 0.91084 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.53 10.80 55.49 0.60 -22.93 16 2 C 0.01 0.24 4.99 -17.43 -0.09 0.16 16 3 Si 0.90 20.42 29.58 -169.99 -5.03 15.39 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.25 -6.16 9.58 -15.06 -0.14 -6.30 16 8 H 0.06 1.57 7.87 -52.49 -0.41 1.15 16 9 N -0.57 -12.40 1.13 -165.95 -0.19 -12.59 16 10 C 0.17 3.62 4.28 -3.58 -0.02 3.60 16 11 C -0.17 -2.90 4.35 -26.59 -0.12 -3.02 16 12 C 0.15 2.27 0.73 -90.48 -0.07 2.21 16 13 O -0.54 -8.90 9.06 -35.23 -0.32 -9.22 16 14 C -0.14 -1.89 5.09 -26.67 -0.14 -2.03 16 15 C -0.12 -1.45 5.64 -26.74 -0.15 -1.60 16 16 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 17 C -0.11 -1.66 4.82 -26.74 -0.13 -1.79 16 18 C -0.07 -1.19 1.58 -90.54 -0.14 -1.33 16 19 H 0.06 1.02 6.55 -51.93 -0.34 0.68 16 20 C 0.21 4.08 2.46 -68.80 -0.17 3.92 16 21 H 0.07 1.45 7.93 -51.93 -0.41 1.04 16 22 C -0.04 -0.82 3.31 -104.62 -0.35 -1.17 16 23 C -0.08 -1.56 7.99 -39.57 -0.32 -1.88 16 24 C -0.11 -2.12 10.06 -39.47 -0.40 -2.52 16 25 C 0.00 0.09 7.15 -39.08 -0.28 -0.19 16 26 C 0.01 0.24 7.16 -39.09 -0.28 -0.04 16 27 C -0.08 -1.53 8.07 -39.47 -0.32 -1.85 16 28 O -0.32 -5.43 11.39 -45.70 -0.52 -5.95 16 29 C 0.22 2.93 8.89 101.05 0.90 3.83 16 30 O -0.32 -5.53 11.41 -45.69 -0.52 -6.06 16 31 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.08 2.04 6.14 -51.93 -0.32 1.72 16 33 H 0.03 0.73 5.93 -51.93 -0.31 0.42 16 34 H 0.07 1.20 4.73 -51.92 -0.25 0.96 16 35 H 0.05 0.73 8.14 -51.94 -0.42 0.30 16 36 H 0.36 5.00 9.05 45.56 0.41 5.42 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.88 6.40 -51.93 -0.33 0.54 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.47 5.98 -51.93 -0.31 1.16 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.17 4.10 5.83 -52.49 -0.31 3.79 16 46 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 47 H 0.12 1.97 6.74 -52.48 -0.35 1.62 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -27.07 359.55 -9.20 -36.27 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.29 Total: 11.34 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.35 Total: -11.68 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.41 Total: -35.52 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -1.36 Total: -21.22 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.07 -9.20 -36.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061887003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.562 kcal (2) G-P(sol) polarization free energy of solvation -27.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds