Wall clock time and date at job start Tue Mar 31 2020 07:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48502 * 109.47090 * 274.18838 * 3 2 1 5 5 H 1.48502 * 109.46808 * 34.18437 * 3 2 1 6 6 H 1.48499 * 109.47140 * 154.18878 * 3 2 1 7 7 C 1.38808 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99828 * 335.75746 * 7 2 1 9 9 N 1.36934 * 120.00079 * 155.75406 * 7 2 1 10 10 C 1.46974 * 120.65858 * 121.58723 * 9 7 2 11 11 C 1.53171 * 108.69483 * 126.22755 * 10 9 7 12 12 C 1.53107 * 109.39371 * 54.75480 * 11 10 9 13 13 O 1.42897 * 109.50602 * 58.77490 * 12 11 10 14 14 C 1.53035 * 109.18614 * 178.76931 * 12 11 10 15 15 C 1.52967 * 109.57647 * 179.73752 * 14 12 11 16 16 C 1.53025 * 109.40075 * 299.90498 * 15 14 12 17 17 C 1.52965 * 109.38254 * 60.17079 * 16 15 14 18 18 C 1.53022 * 109.56806 * 299.89699 * 17 16 15 19 19 H 1.09001 * 109.54192 * 299.68115 * 18 17 16 20 20 C 1.46894 * 120.66726 * 301.56601 * 9 7 2 21 21 H 1.09001 * 109.68339 * 113.83293 * 20 9 7 22 22 C 1.50706 * 109.57358 * 353.52112 * 20 9 7 23 23 C 1.38256 * 119.92617 * 311.06975 * 22 20 9 24 24 C 1.38237 * 120.14243 * 180.02562 * 23 22 20 25 25 C 1.38550 * 120.03181 * 359.96446 * 24 23 22 26 26 C 1.39272 * 119.82444 * 0.02562 * 25 24 23 27 27 C 1.38236 * 119.93129 * 130.80081 * 22 20 9 28 28 O 1.36499 * 108.63948 * 180.02562 * 26 25 24 29 29 C 1.43990 * 105.48345 * 17.28792 * 28 26 25 30 30 O 1.36496 * 131.53634 * 180.02562 * 25 24 23 31 31 H 0.96998 * 119.99639 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.62048 * 6.46035 * 10 9 7 33 33 H 1.09004 * 109.59822 * 245.97973 * 10 9 7 34 34 H 1.08998 * 109.48515 * 294.76894 * 11 10 9 35 35 H 1.09003 * 109.48114 * 174.73293 * 11 10 9 36 36 H 0.96705 * 113.99950 * 59.99937 * 13 12 11 37 37 H 1.08991 * 109.45843 * 299.77156 * 14 12 11 38 38 H 1.09001 * 109.45799 * 59.71045 * 14 12 11 39 39 H 1.08997 * 109.48444 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.49453 * 59.88751 * 15 14 12 41 41 H 1.08998 * 109.48401 * 300.20178 * 16 15 14 42 42 H 1.08994 * 109.49949 * 180.15956 * 16 15 14 43 43 H 1.08999 * 109.45349 * 179.85910 * 17 16 15 44 44 H 1.09008 * 109.45354 * 59.92470 * 17 16 15 45 45 H 1.08003 * 119.92963 * 0.02562 * 23 22 20 46 46 H 1.07995 * 119.98619 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.98143 * 359.97432 * 27 22 20 48 48 H 1.09002 * 110.57329 * 91.43700 * 29 28 26 49 49 H 1.08994 * 110.57034 * 214.16451 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4093 2.0975 -1.3964 5 1 1.4947 2.6255 0.7867 6 1 3.5893 1.4162 0.6096 7 6 2.0103 -1.2021 0.0005 8 1 1.5417 -2.0960 0.3850 9 7 3.2890 -1.2547 -0.4864 10 6 4.3972 -1.7094 0.3652 11 6 5.1350 -2.8434 -0.3531 12 6 5.5672 -2.3685 -1.7430 13 8 6.4129 -1.2238 -1.6145 14 6 6.3304 -3.4943 -2.4444 15 6 6.7610 -3.0314 -3.8373 16 6 5.5214 -2.6700 -4.6586 17 6 4.7611 -1.5412 -3.9602 18 6 4.3302 -2.0000 -2.5654 19 1 3.6782 -2.8691 -2.6526 20 6 3.5806 -0.8581 -1.8705 21 1 4.1991 0.0394 -1.8727 22 6 2.2905 -0.5838 -2.5995 23 6 1.2553 -1.4982 -2.5376 24 6 0.0702 -1.2513 -3.2050 25 6 -0.0832 -0.0854 -3.9376 26 6 0.9595 0.8358 -3.9998 27 6 2.1426 0.5841 -3.3241 28 8 0.5657 1.8888 -4.7740 29 6 -0.8692 1.7956 -4.8487 30 8 -1.1299 0.3902 -4.6733 31 1 -0.4849 0.8401 0.0004 32 1 4.0039 -2.0730 1.3146 33 1 5.0841 -0.8822 0.5442 34 1 4.4722 -3.7029 -0.4522 35 1 6.0150 -3.1274 0.2241 36 1 7.2189 -1.3855 -1.1052 37 1 7.2126 -3.7542 -1.8594 38 1 5.6854 -4.3682 -2.5357 39 1 7.3047 -3.8341 -4.3352 40 1 7.4049 -2.1566 -3.7469 41 1 4.8756 -3.5437 -4.7458 42 1 5.8262 -2.3425 -5.6525 43 1 3.8792 -1.2811 -4.5455 44 1 5.4080 -0.6683 -3.8715 45 1 1.3729 -2.4073 -1.9665 46 1 -0.7366 -1.9675 -3.1552 47 1 2.9511 1.2988 -3.3668 48 1 -1.3327 2.3743 -4.0497 49 1 -1.2248 2.1346 -5.8216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061887005.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:43 Heat of formation + Delta-G solvation = -66.553362 kcal Electronic energy + Delta-G solvation = -33542.067276 eV Core-core repulsion = 29435.353253 eV Total energy + Delta-G solvation = -4106.714023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.46663 -40.07023 -37.58307 -35.63868 -35.39553 -34.78977 -32.25407 -31.95798 -30.08020 -29.77205 -29.34832 -27.79969 -25.43551 -25.00305 -23.18688 -22.43503 -22.06108 -21.79859 -20.65289 -19.46271 -19.38384 -17.27104 -17.20106 -16.72445 -16.46668 -15.79833 -15.43524 -15.26479 -14.92583 -14.49319 -14.34038 -13.96744 -13.79920 -13.48966 -13.24097 -13.15423 -13.07137 -12.62425 -12.52894 -12.41918 -12.37284 -12.33481 -11.88185 -11.83526 -11.57671 -11.25906 -11.07402 -10.95158 -10.83505 -10.66140 -10.60715 -10.38657 -10.34073 -10.17775 -9.99348 -9.83669 -9.76931 -9.45658 -9.11639 -8.44497 -7.83884 -7.10925 -6.38660 -6.06178 -3.65815 2.02221 2.15995 3.36709 3.43900 3.53050 3.61133 4.01842 4.49731 4.55837 4.58506 4.89124 4.97464 5.01824 5.05609 5.11653 5.23744 5.28507 5.31115 5.36544 5.53488 5.58721 5.68939 5.74590 5.77069 5.84029 5.87684 5.95425 5.99409 6.03354 6.13237 6.16819 6.21368 6.27709 6.31017 6.33243 6.38213 6.46071 6.51905 6.62093 6.69609 6.74294 6.85131 6.88968 6.90539 7.01217 7.19265 7.32438 7.57149 7.92335 8.03604 8.06407 8.51667 9.01516 9.64729 10.23564 11.02986 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.005701 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.589506 B = 4910.044569 C = 6195.355430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.077 3.923 3 Si 0.850 3.150 4 H -0.267 1.267 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.288 4.288 8 H 0.068 0.932 9 N -0.597 5.597 10 C 0.148 3.852 11 C -0.161 4.161 12 C 0.146 3.854 13 O -0.550 6.550 14 C -0.143 4.143 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.074 4.074 19 H 0.080 0.920 20 C 0.222 3.778 21 H 0.042 0.958 22 C -0.050 4.050 23 C -0.012 4.012 24 C -0.102 4.102 25 C 0.025 3.975 26 C 0.000 4.000 27 C -0.093 4.093 28 O -0.320 6.320 29 C 0.216 3.784 30 O -0.318 6.318 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.364 0.636 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.138 0.862 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.073 0.927 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.212 -4.348 -7.423 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.130 4.130 3 Si 0.678 3.322 4 H -0.192 1.192 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.416 4.416 8 H 0.086 0.914 9 N -0.321 5.321 10 C 0.023 3.977 11 C -0.200 4.200 12 C 0.106 3.894 13 O -0.354 6.354 14 C -0.181 4.181 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.094 4.094 19 H 0.098 0.902 20 C 0.117 3.883 21 H 0.060 0.940 22 C -0.050 4.050 23 C -0.031 4.031 24 C -0.121 4.121 25 C -0.018 4.018 26 C -0.043 4.043 27 C -0.112 4.112 28 O -0.237 6.237 29 C 0.103 3.897 30 O -0.235 6.235 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.210 0.790 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.156 0.844 46 H 0.139 0.861 47 H 0.134 0.866 48 H 0.090 0.910 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.456 -3.908 -7.946 11.576 hybrid contribution 0.559 1.108 0.509 1.341 sum 8.015 -2.801 -7.437 11.287 Atomic orbital electron populations 1.69913 1.06274 1.26957 1.47229 1.25853 0.94684 0.97855 0.94590 0.87230 0.80985 0.85104 0.78888 1.19237 1.23031 1.19394 1.18345 0.88029 0.93814 1.41406 0.91425 1.44217 1.04377 1.78100 1.05417 1.21007 0.89865 0.93279 0.93509 1.22705 1.00131 1.00798 0.96371 1.21075 0.89803 0.84624 0.93914 1.86594 1.35709 1.36334 1.76774 1.22239 1.00055 0.99010 0.96786 1.21429 0.97802 1.00638 0.95147 1.21512 0.96801 0.98912 0.98185 1.21544 0.99855 0.98195 0.95529 1.21594 0.94229 1.00021 0.93560 0.90192 1.19530 0.89935 0.94352 0.84529 0.94000 1.19309 0.97000 0.92643 0.96066 1.20601 0.90178 0.99879 0.92440 1.19873 0.99234 0.95379 0.97600 1.19672 0.86651 0.97599 0.97920 1.19445 0.97012 0.88888 0.98993 1.19743 0.95211 0.98075 0.98165 1.87241 1.21906 1.47316 1.67256 1.25376 0.79652 0.81991 1.02676 1.87253 1.43850 1.23024 1.69380 0.92807 0.92052 0.95782 0.91334 0.92885 0.79014 0.92415 0.91429 0.92951 0.91613 0.92410 0.92596 0.91943 0.91506 0.84381 0.86134 0.86560 0.90954 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.21 13.92 55.49 0.77 -23.43 16 2 C 0.08 2.04 3.65 -17.43 -0.06 1.97 16 3 Si 0.85 21.71 25.83 -169.99 -4.39 17.32 16 4 H -0.27 -6.72 5.38 56.52 0.30 -6.42 16 5 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 6 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.29 -7.23 6.65 -15.06 -0.10 -7.33 16 8 H 0.07 1.86 8.06 -52.48 -0.42 1.43 16 9 N -0.60 -12.98 2.07 -166.05 -0.34 -13.32 16 10 C 0.15 2.81 6.29 -3.70 -0.02 2.79 16 11 C -0.16 -2.41 5.06 -26.59 -0.13 -2.54 16 12 C 0.15 2.11 0.55 -90.52 -0.05 2.06 16 13 O -0.55 -8.05 10.46 -35.23 -0.37 -8.42 16 14 C -0.14 -1.69 4.89 -26.73 -0.13 -1.82 16 15 C -0.11 -1.29 5.78 -26.74 -0.15 -1.45 16 16 C -0.12 -1.46 5.93 -26.74 -0.16 -1.62 16 17 C -0.11 -1.72 4.85 -26.74 -0.13 -1.85 16 18 C -0.07 -1.22 1.43 -90.46 -0.13 -1.35 16 19 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 20 C 0.22 4.48 1.21 -68.74 -0.08 4.39 16 21 H 0.04 0.94 7.24 -51.93 -0.38 0.56 16 22 C -0.05 -1.04 1.75 -104.61 -0.18 -1.23 16 23 C -0.01 -0.26 6.85 -39.58 -0.27 -0.53 16 24 C -0.10 -2.13 10.06 -39.47 -0.40 -2.52 16 25 C 0.03 0.53 7.15 -39.08 -0.28 0.25 16 26 C 0.00 0.00 7.15 -39.08 -0.28 -0.28 16 27 C -0.09 -1.99 7.36 -39.47 -0.29 -2.28 16 28 O -0.32 -6.29 11.40 -45.69 -0.52 -6.81 16 29 C 0.22 3.49 8.89 101.05 0.90 4.38 16 30 O -0.32 -6.14 11.40 -45.68 -0.52 -6.66 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 1.18 7.94 -51.93 -0.41 0.76 16 33 H 0.02 0.48 7.82 -51.93 -0.41 0.07 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.36 3.94 9.05 45.56 0.41 4.35 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.00 7.26 -51.93 -0.38 0.62 16 44 H 0.07 1.07 7.71 -51.92 -0.40 0.67 16 45 H 0.14 2.96 7.06 -52.48 -0.37 2.59 16 46 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 47 H 0.12 2.44 7.69 -52.49 -0.40 2.04 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -29.55 365.23 -8.85 -38.41 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.02 Total: 6.39 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.96 Total: -8.97 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.43 Total: -36.76 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.41 Total: -21.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.39 Total: 17.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.55 -8.85 -38.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061887005.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.146 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds