Wall clock time and date at job start Tue Mar 31 2020 07:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48502 * 109.47090 * 274.18838 * 3 2 1 5 5 H 1.48502 * 109.46808 * 34.18437 * 3 2 1 6 6 H 1.48499 * 109.47140 * 154.18878 * 3 2 1 7 7 C 1.38808 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99828 * 335.75746 * 7 2 1 9 9 N 1.36934 * 120.00079 * 155.75406 * 7 2 1 10 10 C 1.46974 * 120.65858 * 121.58723 * 9 7 2 11 11 C 1.53171 * 108.69483 * 126.22755 * 10 9 7 12 12 C 1.53107 * 109.39371 * 54.75480 * 11 10 9 13 13 O 1.42897 * 109.50602 * 58.77490 * 12 11 10 14 14 C 1.53035 * 109.18614 * 178.76931 * 12 11 10 15 15 C 1.52967 * 109.57647 * 179.73752 * 14 12 11 16 16 C 1.53025 * 109.40075 * 299.90498 * 15 14 12 17 17 C 1.52965 * 109.38254 * 60.17079 * 16 15 14 18 18 C 1.53022 * 109.56806 * 299.89699 * 17 16 15 19 19 H 1.09001 * 109.54192 * 299.68115 * 18 17 16 20 20 C 1.46894 * 120.66726 * 301.56601 * 9 7 2 21 21 H 1.09001 * 109.68339 * 113.83293 * 20 9 7 22 22 C 1.50706 * 109.57358 * 353.52112 * 20 9 7 23 23 C 1.38256 * 119.92617 * 311.06975 * 22 20 9 24 24 C 1.38237 * 120.14243 * 180.02562 * 23 22 20 25 25 C 1.38550 * 120.03181 * 359.96446 * 24 23 22 26 26 C 1.39272 * 119.82444 * 0.02562 * 25 24 23 27 27 C 1.38236 * 119.93129 * 130.80081 * 22 20 9 28 28 O 1.36499 * 108.63948 * 180.02562 * 26 25 24 29 29 C 1.43990 * 105.48345 * 17.28792 * 28 26 25 30 30 O 1.36496 * 131.53634 * 180.02562 * 25 24 23 31 31 H 0.96998 * 119.99639 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.62048 * 6.46035 * 10 9 7 33 33 H 1.09004 * 109.59822 * 245.97973 * 10 9 7 34 34 H 1.08998 * 109.48515 * 294.76894 * 11 10 9 35 35 H 1.09003 * 109.48114 * 174.73293 * 11 10 9 36 36 H 0.96705 * 113.99950 * 59.99937 * 13 12 11 37 37 H 1.08991 * 109.45843 * 299.77156 * 14 12 11 38 38 H 1.09001 * 109.45799 * 59.71045 * 14 12 11 39 39 H 1.08997 * 109.48444 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.49453 * 59.88751 * 15 14 12 41 41 H 1.08998 * 109.48401 * 300.20178 * 16 15 14 42 42 H 1.08994 * 109.49949 * 180.15956 * 16 15 14 43 43 H 1.08999 * 109.45349 * 179.85910 * 17 16 15 44 44 H 1.09008 * 109.45354 * 59.92470 * 17 16 15 45 45 H 1.08003 * 119.92963 * 0.02562 * 23 22 20 46 46 H 1.07995 * 119.98619 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.98143 * 359.97432 * 27 22 20 48 48 H 1.09002 * 110.57329 * 91.43700 * 29 28 26 49 49 H 1.08994 * 110.57034 * 214.16451 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4093 2.0975 -1.3964 5 1 1.4947 2.6255 0.7867 6 1 3.5893 1.4162 0.6096 7 6 2.0103 -1.2021 0.0005 8 1 1.5417 -2.0960 0.3850 9 7 3.2890 -1.2547 -0.4864 10 6 4.3972 -1.7094 0.3652 11 6 5.1350 -2.8434 -0.3531 12 6 5.5672 -2.3685 -1.7430 13 8 6.4129 -1.2238 -1.6145 14 6 6.3304 -3.4943 -2.4444 15 6 6.7610 -3.0314 -3.8373 16 6 5.5214 -2.6700 -4.6586 17 6 4.7611 -1.5412 -3.9602 18 6 4.3302 -2.0000 -2.5654 19 1 3.6782 -2.8691 -2.6526 20 6 3.5806 -0.8581 -1.8705 21 1 4.1991 0.0394 -1.8727 22 6 2.2905 -0.5838 -2.5995 23 6 1.2553 -1.4982 -2.5376 24 6 0.0702 -1.2513 -3.2050 25 6 -0.0832 -0.0854 -3.9376 26 6 0.9595 0.8358 -3.9998 27 6 2.1426 0.5841 -3.3241 28 8 0.5657 1.8888 -4.7740 29 6 -0.8692 1.7956 -4.8487 30 8 -1.1299 0.3902 -4.6733 31 1 -0.4849 0.8401 0.0004 32 1 4.0039 -2.0730 1.3146 33 1 5.0841 -0.8822 0.5442 34 1 4.4722 -3.7029 -0.4522 35 1 6.0150 -3.1274 0.2241 36 1 7.2189 -1.3855 -1.1052 37 1 7.2126 -3.7542 -1.8594 38 1 5.6854 -4.3682 -2.5357 39 1 7.3047 -3.8341 -4.3352 40 1 7.4049 -2.1566 -3.7469 41 1 4.8756 -3.5437 -4.7458 42 1 5.8262 -2.3425 -5.6525 43 1 3.8792 -1.2811 -4.5455 44 1 5.4080 -0.6683 -3.8715 45 1 1.3729 -2.4073 -1.9665 46 1 -0.7366 -1.9675 -3.1552 47 1 2.9511 1.2988 -3.3668 48 1 -1.3327 2.3743 -4.0497 49 1 -1.2248 2.1346 -5.8216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061887005.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:42 Heat of formation + Delta-G solvation = -85.101589 kcal Electronic energy + Delta-G solvation = -33542.871588 eV Core-core repulsion = 29435.353253 eV Total energy + Delta-G solvation = -4107.518334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.99951 -41.37568 -39.08267 -37.16548 -36.89221 -35.99907 -34.13430 -33.29847 -31.60421 -31.32277 -30.70502 -29.19758 -26.98561 -26.53018 -24.66741 -23.94015 -23.52406 -23.19828 -22.07566 -20.88751 -20.59183 -19.03088 -18.77828 -18.25451 -18.01770 -17.07545 -16.87858 -16.68001 -16.36742 -16.07237 -15.70730 -15.48197 -15.28394 -14.94801 -14.75831 -14.71503 -14.45859 -14.17441 -14.01076 -13.92418 -13.88248 -13.83286 -13.35021 -13.20988 -12.91096 -12.65738 -12.63721 -12.53823 -12.30344 -12.10078 -11.98271 -11.95431 -11.70958 -11.63654 -11.51814 -11.38951 -11.28006 -10.68964 -10.45391 -10.28058 -9.53438 -8.76140 -8.26925 -8.07126 -5.69462 0.36984 0.47870 1.32355 1.42325 1.50145 1.88254 2.48679 2.62758 2.83083 3.13935 3.46842 3.56378 3.64054 3.79312 3.86427 3.89494 3.97338 4.04796 4.17699 4.26415 4.32873 4.34094 4.39942 4.47096 4.52511 4.58910 4.65536 4.69630 4.76826 4.77406 4.86019 4.90967 5.03152 5.09356 5.14282 5.17468 5.20945 5.24125 5.25857 5.37762 5.41046 5.44217 5.47316 5.50090 5.60278 5.67901 5.71908 5.88413 6.03614 6.31023 6.43532 7.11984 7.19141 7.65659 8.29436 8.96592 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.005701 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.589506 B = 4910.044569 C = 6195.355430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.050 3.950 3 Si 0.881 3.119 4 H -0.266 1.266 5 H -0.315 1.315 6 H -0.274 1.274 7 C -0.262 4.262 8 H 0.043 0.957 9 N -0.607 5.607 10 C 0.143 3.857 11 C -0.150 4.150 12 C 0.149 3.851 13 O -0.566 6.566 14 C -0.135 4.135 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.107 4.107 18 C -0.070 4.070 19 H 0.075 0.925 20 C 0.226 3.774 21 H 0.020 0.980 22 C -0.051 4.051 23 C -0.019 4.019 24 C -0.106 4.106 25 C 0.016 3.984 26 C -0.006 4.006 27 C -0.108 4.108 28 O -0.330 6.330 29 C 0.206 3.794 30 O -0.324 6.324 31 H 0.256 0.744 32 H 0.053 0.947 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.383 0.617 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.114 0.886 48 H 0.083 0.917 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.026 -5.481 -8.608 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.153 4.153 3 Si 0.709 3.291 4 H -0.191 1.191 5 H -0.244 1.244 6 H -0.199 1.199 7 C -0.392 4.392 8 H 0.061 0.939 9 N -0.332 5.332 10 C 0.019 3.981 11 C -0.189 4.189 12 C 0.108 3.892 13 O -0.374 6.374 14 C -0.173 4.173 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.090 4.090 19 H 0.093 0.907 20 C 0.121 3.879 21 H 0.037 0.963 22 C -0.051 4.051 23 C -0.038 4.038 24 C -0.125 4.125 25 C -0.028 4.028 26 C -0.050 4.050 27 C -0.127 4.127 28 O -0.247 6.247 29 C 0.095 3.905 30 O -0.241 6.241 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.231 0.769 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.132 0.868 48 H 0.100 0.900 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.310 -5.044 -9.135 13.985 hybrid contribution -0.023 1.502 0.854 1.727 sum 9.288 -3.542 -8.282 12.938 Atomic orbital electron populations 1.69985 1.06939 1.26553 1.50056 1.26092 0.94772 0.98855 0.95551 0.86745 0.79863 0.83942 0.78505 1.19131 1.24375 1.19901 1.18132 0.89159 0.92360 1.39517 0.93938 1.44362 1.04021 1.78239 1.06613 1.21102 0.89074 0.94535 0.93437 1.22588 1.00823 0.98713 0.96793 1.20998 0.89318 0.85522 0.93315 1.86563 1.36737 1.36733 1.77328 1.22164 1.00601 0.97589 0.96952 1.21413 0.97092 1.01274 0.94838 1.21505 0.97187 0.97799 0.98654 1.21459 0.99345 0.98974 0.94780 1.21492 0.95029 0.98025 0.94452 0.90698 1.19476 0.89600 0.94942 0.83899 0.96260 1.19426 0.97350 0.92453 0.95896 1.20531 0.90601 0.99710 0.92957 1.20062 0.99398 0.95768 0.97277 1.19775 0.87218 0.97609 0.98157 1.19611 0.97009 0.89514 0.98870 1.19836 0.95533 0.98378 0.98969 1.87217 1.23945 1.46803 1.66746 1.25970 0.77986 0.80608 1.05932 1.87230 1.43329 1.24666 1.68910 0.93497 0.92803 0.96404 0.91551 0.89504 0.76891 0.89944 0.91068 0.90697 0.91941 0.91956 0.91512 0.93555 0.92656 0.85118 0.84866 0.86788 0.89975 0.81338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.21 13.92 21.65 0.30 -50.91 16 2 C 0.05 2.73 3.65 84.86 0.31 3.04 16 3 Si 0.88 45.51 25.83 68.60 1.77 47.28 16 4 H -0.27 -13.56 5.38 99.48 0.54 -13.02 16 5 H -0.32 -16.82 7.11 99.48 0.71 -16.11 16 6 H -0.27 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.26 -13.44 6.65 84.03 0.56 -12.88 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 9 N -0.61 -26.60 2.07 -679.25 -1.41 -28.01 16 10 C 0.14 5.31 6.29 86.35 0.54 5.85 16 11 C -0.15 -4.13 5.06 30.69 0.16 -3.98 16 12 C 0.15 3.93 0.55 -10.73 -0.01 3.92 16 13 O -0.57 -15.32 10.46 -148.98 -1.56 -16.88 16 14 C -0.14 -2.66 4.89 30.59 0.15 -2.51 16 15 C -0.11 -2.09 5.78 30.59 0.18 -1.91 16 16 C -0.11 -2.58 5.93 30.59 0.18 -2.40 16 17 C -0.11 -3.18 4.85 30.59 0.15 -3.03 16 18 C -0.07 -2.26 1.43 -10.69 -0.02 -2.27 16 19 H 0.07 2.50 7.87 -2.39 -0.02 2.48 16 20 C 0.23 9.19 1.21 44.26 0.05 9.24 16 21 H 0.02 0.89 7.24 -2.39 -0.02 0.87 16 22 C -0.05 -2.17 1.75 -19.86 -0.03 -2.21 16 23 C -0.02 -0.84 6.85 22.27 0.15 -0.69 16 24 C -0.11 -4.48 10.06 22.34 0.22 -4.26 16 25 C 0.02 0.69 7.15 22.59 0.16 0.85 16 26 C -0.01 -0.28 7.15 22.59 0.16 -0.11 16 27 C -0.11 -4.73 7.36 22.34 0.16 -4.57 16 28 O -0.33 -12.70 11.40 -76.04 -0.87 -13.57 16 29 C 0.21 6.29 8.89 113.37 1.01 7.30 16 30 O -0.32 -12.19 11.40 -76.01 -0.87 -13.05 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.05 2.05 7.94 -2.39 -0.02 2.03 16 33 H 0.02 0.69 7.82 -2.39 -0.02 0.67 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.38 7.04 9.05 -74.05 -0.67 6.37 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.27 7.70 -2.39 -0.02 1.25 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 1.49 7.26 -2.39 -0.02 1.47 16 44 H 0.05 1.75 7.71 -2.38 -0.02 1.73 16 45 H 0.13 5.75 7.06 -2.91 -0.02 5.73 16 46 H 0.13 5.13 8.06 -2.91 -0.02 5.11 16 47 H 0.11 4.93 7.69 -2.91 -0.02 4.91 16 48 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.17 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -65.31 365.23 1.58 -63.73 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.12 Total: 22.02 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 4.09 Total: -10.62 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.11 Total: -78.92 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -3.29 Total: -43.49 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.77 Total: 47.28 kcal Total: -65.31 1.58 -63.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061887005.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.372 kcal (2) G-P(sol) polarization free energy of solvation -65.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds