Wall clock time and date at job start Tue Mar 31 2020 07:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99811 * 2 1 4 4 H 1.48491 * 109.46767 * 240.00042 * 3 2 1 5 5 H 1.48497 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46862 * 119.99773 * 3 2 1 7 7 C 1.38810 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99520 * 196.91071 * 7 2 1 9 9 N 1.36931 * 120.00244 * 16.91257 * 7 2 1 10 10 C 1.47180 * 120.82654 * 27.74604 * 9 7 2 11 11 C 1.53168 * 108.78492 * 126.20169 * 10 9 7 12 12 C 1.53100 * 109.37540 * 54.77141 * 11 10 9 13 13 O 1.42899 * 109.59080 * 58.82404 * 12 11 10 14 14 C 1.53033 * 109.19040 * 178.75694 * 12 11 10 15 15 C 1.52970 * 109.58028 * 179.73964 * 14 12 11 16 16 C 1.53021 * 109.39443 * 299.89718 * 15 14 12 17 17 C 1.52971 * 109.38064 * 60.18476 * 16 15 14 18 18 C 1.53033 * 109.56674 * 299.89224 * 17 16 15 19 19 H 1.09001 * 109.53986 * 299.40255 * 18 17 16 20 20 C 1.46894 * 120.66348 * 207.62240 * 9 7 2 21 21 H 1.09004 * 109.57386 * 353.61357 * 20 9 7 22 22 C 1.50696 * 109.57723 * 113.86794 * 20 9 7 23 23 C 1.38250 * 119.92800 * 3.47221 * 22 20 9 24 24 C 1.38234 * 120.14400 * 180.02562 * 23 22 20 25 25 C 1.38546 * 120.02922 * 359.97438 * 24 23 22 26 26 C 1.39258 * 119.82890 * 359.97438 * 25 24 23 27 27 C 1.38244 * 119.93024 * 183.48869 * 22 20 9 28 28 O 1.36706 * 108.70513 * 180.13297 * 26 25 24 29 29 C 1.43989 * 105.37827 * 17.06926 * 28 26 25 30 30 O 1.36503 * 131.53253 * 179.97438 * 25 24 23 31 31 H 0.96994 * 120.00171 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.55229 * 6.41646 * 10 9 7 33 33 H 1.09002 * 109.70616 * 246.07436 * 10 9 7 34 34 H 1.08994 * 109.48869 * 294.79513 * 11 10 9 35 35 H 1.09004 * 109.48274 * 174.73935 * 11 10 9 36 36 H 0.96695 * 114.00168 * 59.83140 * 13 12 11 37 37 H 1.08994 * 109.45450 * 59.70744 * 14 12 11 38 38 H 1.09003 * 109.45452 * 299.76824 * 14 12 11 39 39 H 1.09005 * 109.48700 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.48523 * 59.87796 * 15 14 12 41 41 H 1.08997 * 109.48862 * 300.21103 * 16 15 14 42 42 H 1.09000 * 109.48411 * 180.15329 * 16 15 14 43 43 H 1.08993 * 109.45945 * 179.86065 * 17 16 15 44 44 H 1.08996 * 109.45600 * 59.91453 * 17 16 15 45 45 H 1.08000 * 119.93043 * 0.02562 * 23 22 20 46 46 H 1.08002 * 119.98647 * 180.02562 * 24 23 22 47 47 H 1.08001 * 119.98053 * 0.02562 * 27 22 20 48 48 H 1.08995 * 110.57831 * 214.44042 * 29 28 26 49 49 H 1.08999 * 110.57190 * 91.70887 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2221 0.2726 9 7 1.3701 -2.3625 -0.3439 10 6 0.2180 -2.3451 -1.2596 11 6 0.4881 -3.3185 -2.4109 12 6 0.8128 -4.7019 -1.8408 13 8 -0.2822 -5.1615 -1.0459 14 6 1.0514 -5.6782 -2.9948 15 6 1.3831 -7.0625 -2.4349 16 6 2.6462 -6.9738 -1.5756 17 6 2.4061 -6.0020 -0.4190 18 6 2.0719 -4.6160 -0.9751 19 1 2.9068 -4.2525 -1.5742 20 6 1.8209 -3.6541 0.1913 21 1 2.7438 -3.5141 0.7542 22 6 0.7591 -4.2240 1.0962 23 6 -0.4461 -3.5636 1.2466 24 6 -1.4230 -4.0820 2.0760 25 6 -1.1962 -5.2662 2.7584 26 6 0.0174 -5.9320 2.6061 27 6 0.9924 -5.4058 1.7743 28 8 -0.0044 -7.0640 3.3723 29 6 -1.3930 -7.2917 3.6778 30 8 -1.9786 -5.9774 3.6218 31 1 -0.4850 0.8400 0.0004 32 1 0.0822 -1.3388 -1.6559 33 1 -0.6811 -2.6517 -0.7250 34 1 1.3328 -2.9603 -2.9993 35 1 -0.3955 -3.3850 -3.0457 36 1 -1.1148 -5.2400 -1.5312 37 1 1.8832 -5.3241 -3.6037 38 1 0.1531 -5.7408 -3.6090 39 1 1.5523 -7.7567 -3.2580 40 1 0.5522 -7.4165 -1.8245 41 1 3.4761 -6.6160 -2.1849 42 1 2.8854 -7.9601 -1.1780 43 1 3.3042 -5.9397 0.1954 44 1 1.5748 -6.3592 0.1888 45 1 -0.6248 -2.6406 0.7151 46 1 -2.3637 -3.5642 2.1913 47 1 1.9351 -5.9192 1.6554 48 1 -1.5010 -7.7168 4.6755 49 1 -1.8468 -7.9453 2.9328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061887007.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:49 Heat of formation + Delta-G solvation = -40.059556 kcal Electronic energy + Delta-G solvation = -33627.675298 eV Core-core repulsion = 29522.110132 eV Total energy + Delta-G solvation = -4105.565165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.62503 -40.22045 -37.22758 -35.79464 -35.51531 -34.75312 -32.49672 -31.66898 -29.99310 -29.28491 -29.04934 -28.22138 -25.75663 -24.80109 -23.25845 -22.60656 -22.03517 -21.81881 -20.98567 -19.45876 -19.02963 -17.36584 -16.96838 -16.91795 -16.54446 -15.80283 -15.53350 -15.05690 -14.86501 -14.52847 -14.37324 -13.96514 -13.72496 -13.55469 -13.35938 -13.23739 -13.08373 -12.65951 -12.51981 -12.35043 -12.32865 -12.21592 -11.65615 -11.54364 -11.25515 -11.20490 -11.04376 -10.98964 -10.77999 -10.67888 -10.46026 -10.39156 -10.22119 -10.13940 -9.97298 -9.76015 -9.52258 -9.29650 -8.92571 -8.48597 -7.97833 -7.20714 -6.75906 -5.85841 -3.27630 1.95449 2.00869 3.26780 3.36784 3.42671 3.43834 3.88432 4.41127 4.43696 4.71971 4.92396 4.98435 5.02678 5.11143 5.15122 5.16557 5.26243 5.33003 5.47628 5.55753 5.64598 5.70721 5.74057 5.80703 5.84194 5.87818 5.90750 6.03236 6.11261 6.15530 6.21672 6.27440 6.34741 6.38137 6.42150 6.47880 6.49455 6.52443 6.70618 6.73374 6.81804 6.85286 6.87669 7.07260 7.28409 7.37056 7.55294 7.63854 7.76277 7.85487 8.22259 8.38935 9.15166 9.76853 10.34204 11.22833 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009945 B = 0.005528 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.829474 B = 5063.652344 C = 6815.125011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.008 3.992 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.579 5.579 10 C 0.159 3.841 11 C -0.167 4.167 12 C 0.148 3.852 13 O -0.537 6.537 14 C -0.144 4.144 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.136 4.136 18 C -0.071 4.071 19 H 0.078 0.922 20 C 0.213 3.787 21 H 0.073 0.927 22 C -0.037 4.037 23 C -0.071 4.071 24 C -0.110 4.110 25 C 0.007 3.993 26 C 0.008 3.992 27 C -0.107 4.107 28 O -0.320 6.320 29 C 0.216 3.784 30 O -0.320 6.320 31 H 0.256 0.744 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.359 0.641 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.176 0.824 46 H 0.119 0.881 47 H 0.131 0.869 48 H 0.118 0.882 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 -13.785 -2.534 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.299 5.299 10 C 0.034 3.966 11 C -0.207 4.207 12 C 0.108 3.892 13 O -0.341 6.341 14 C -0.181 4.181 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.173 4.173 18 C -0.091 4.091 19 H 0.096 0.904 20 C 0.104 3.896 21 H 0.091 0.909 22 C -0.040 4.040 23 C -0.088 4.088 24 C -0.128 4.128 25 C -0.036 4.036 26 C -0.035 4.035 27 C -0.126 4.126 28 O -0.237 6.237 29 C 0.103 3.897 30 O -0.237 6.237 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.204 0.796 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.193 0.807 46 H 0.137 0.863 47 H 0.149 0.851 48 H 0.136 0.864 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.617 -13.667 -1.863 13.808 hybrid contribution -0.164 0.569 -0.416 0.724 sum -0.781 -13.098 -2.280 13.318 Atomic orbital electron populations 1.69937 1.05165 1.25834 1.53603 1.24973 0.95268 0.98258 1.00549 0.86375 0.78942 0.83376 0.78091 1.21119 1.21698 1.20918 1.19120 0.92607 0.84471 1.42097 0.91612 1.44102 1.35378 1.00736 1.49639 1.21152 0.89465 0.98000 0.88002 1.22851 1.00514 0.96925 1.00373 1.20979 0.87465 0.91446 0.89336 1.86740 1.19260 1.88920 1.39198 1.22256 1.01320 0.96183 0.98385 1.21407 0.98386 0.96413 0.98673 1.21509 0.97405 0.99015 0.97407 1.22253 1.01955 0.95142 0.97943 1.21482 0.95389 0.94915 0.97275 0.90419 1.19454 0.93744 0.86045 0.90310 0.90906 1.20399 0.96716 0.91757 0.95142 1.21737 0.91031 1.00745 0.95293 1.20130 1.01121 0.93751 0.97844 1.19731 0.90352 0.97379 0.96180 1.19663 0.96764 0.89282 0.97821 1.20182 0.98732 0.97286 0.96371 1.87318 1.26535 1.42830 1.66970 1.25343 0.76640 0.85555 1.02167 1.87276 1.51573 1.23325 1.61506 0.93440 0.89542 0.94006 0.92114 0.93250 0.79577 0.91812 0.92535 0.93208 0.91581 0.92753 0.92758 0.92571 0.88667 0.80736 0.86290 0.85139 0.86433 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.94 11.17 55.49 0.62 -23.32 16 2 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 3 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.40 9.59 -15.06 -0.14 -6.54 16 8 H 0.07 1.66 7.88 -52.49 -0.41 1.24 16 9 N -0.58 -12.85 2.07 -165.89 -0.34 -13.19 16 10 C 0.16 3.34 4.17 -3.58 -0.01 3.32 16 11 C -0.17 -2.84 5.07 -26.59 -0.13 -2.97 16 12 C 0.15 2.22 0.55 -90.53 -0.05 2.17 16 13 O -0.54 -8.13 7.69 -35.23 -0.27 -8.40 16 14 C -0.14 -1.82 4.89 -26.73 -0.13 -1.95 16 15 C -0.11 -1.33 5.78 -26.74 -0.15 -1.49 16 16 C -0.12 -1.42 5.93 -26.74 -0.16 -1.58 16 17 C -0.14 -1.92 3.49 -26.73 -0.09 -2.02 16 18 C -0.07 -1.14 1.93 -90.45 -0.17 -1.32 16 19 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.21 4.12 2.69 -68.74 -0.18 3.93 16 21 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 22 C -0.04 -0.71 3.19 -104.62 -0.33 -1.05 16 23 C -0.07 -1.43 7.20 -39.58 -0.29 -1.72 16 24 C -0.11 -2.10 10.06 -39.47 -0.40 -2.49 16 25 C 0.01 0.13 7.15 -39.09 -0.28 -0.15 16 26 C 0.01 0.15 7.15 -39.09 -0.28 -0.13 16 27 C -0.11 -1.91 7.25 -39.47 -0.29 -2.20 16 28 O -0.32 -5.34 11.42 -46.36 -0.53 -5.87 16 29 C 0.22 2.89 8.88 101.05 0.90 3.79 16 30 O -0.32 -5.48 11.40 -45.69 -0.52 -6.00 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.09 2.10 6.04 -51.93 -0.31 1.79 16 33 H 0.04 0.91 4.64 -51.93 -0.24 0.67 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.36 4.51 9.05 45.56 0.41 4.92 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.84 7.70 -51.93 -0.40 0.44 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 44 H 0.10 1.47 4.12 -51.93 -0.21 1.26 16 45 H 0.18 4.01 4.50 -52.49 -0.24 3.77 16 46 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 47 H 0.13 2.12 5.41 -52.49 -0.28 1.84 16 48 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -27.77 357.42 -9.27 -37.04 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.29 Total: 10.88 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.29 Total: -12.25 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.28 Total: -36.51 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.32 Total: -20.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.77 -9.27 -37.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061887007.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.021 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds