Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38292 * 119.92471 * 2 1 4 4 C 1.38109 * 120.07088 * 179.97438 * 3 2 1 5 5 C 1.38909 * 119.92756 * 0.02562 * 4 3 2 6 6 N 1.39760 * 120.07103 * 179.97438 * 5 4 3 7 7 C 1.46519 * 118.34616 * 93.74991 * 6 5 4 8 8 N 1.47710 * 108.52329 * 230.42389 * 7 6 5 9 9 C 1.36939 * 122.10319 * 121.77027 * 8 7 6 10 10 H 1.07992 * 120.00211 * 207.61558 * 9 8 7 11 11 C 1.38807 * 119.99575 * 27.34158 * 9 8 7 12 12 N 1.31623 * 120.00507 * 17.09620 * 11 9 8 13 13 Si 1.86807 * 119.99968 * 197.08851 * 11 9 8 14 14 H 1.48506 * 109.46790 * 60.00179 * 13 11 9 15 15 H 1.48499 * 109.47166 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46894 * 300.00610 * 13 11 9 17 17 S 1.66879 * 115.79481 * 301.50482 * 8 7 6 18 18 O 1.42100 * 106.78787 * 152.55267 * 17 8 7 19 19 O 1.42097 * 106.78847 * 286.44300 * 17 8 7 20 20 C 1.76635 * 104.69076 * 39.52787 * 17 8 7 21 21 C 1.37968 * 120.10848 * 169.47260 * 20 17 8 22 22 C 1.38958 * 118.34103 * 179.50392 * 21 20 17 23 23 C 1.38089 * 118.92223 * 359.86375 * 22 21 20 24 24 N 1.31695 * 121.19186 * 0.32279 * 23 22 21 25 25 C 1.33087 * 121.99168 * 0.11257 * 24 23 22 26 26 C 1.38918 * 119.85157 * 0.24849 * 5 4 3 27 27 C 1.38104 * 119.92113 * 359.50274 * 26 5 4 28 28 H 1.09000 * 109.46596 * 90.00088 * 1 2 3 29 29 H 1.08998 * 109.47006 * 209.99734 * 1 2 3 30 30 H 1.08999 * 109.47175 * 329.99881 * 1 2 3 31 31 H 1.08000 * 119.96371 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.02959 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.73446 * 110.69491 * 7 6 5 34 34 H 1.09003 * 109.68950 * 350.11589 * 7 6 5 35 35 H 0.96995 * 119.99942 * 179.97438 * 12 11 9 36 36 H 1.08000 * 120.82659 * 359.53399 * 21 20 17 37 37 H 1.08005 * 120.53885 * 179.83064 * 22 21 20 38 38 H 1.08001 * 119.40764 * 180.30727 * 23 22 21 39 39 H 1.08000 * 120.03617 * 179.74808 * 26 5 4 40 40 H 1.07998 * 119.96010 * 180.24894 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2021 0.0005 5 6 4.2741 0.0000 0.0005 6 7 5.6717 0.0000 0.0005 7 6 6.3674 -0.0843 1.2873 8 7 7.3754 0.9937 1.3472 9 6 7.3693 1.9417 2.3354 10 1 7.7817 2.9217 2.1461 11 6 6.8277 1.6449 3.5785 12 7 6.6308 0.3914 3.9283 13 14 6.3785 3.0245 4.7552 14 1 5.3629 3.9039 4.1222 15 1 5.8237 2.4473 6.0059 16 1 7.5922 3.8189 5.0729 17 16 8.5264 0.9796 0.1390 18 8 8.9544 2.3233 -0.0359 19 8 9.4112 -0.0942 0.4275 20 6 7.6380 0.5328 -1.3208 21 6 8.2416 0.6359 -2.5572 22 6 7.5124 0.2647 -3.6803 23 6 6.2200 -0.1932 -3.5161 24 7 5.6723 -0.2760 -2.3213 25 6 6.3291 0.0764 -1.2187 26 6 3.5779 -1.2022 -0.0052 27 6 2.1969 -1.1985 -0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6551 2.1328 0.0004 32 1 4.1161 2.1385 0.0010 33 1 6.8613 -1.0519 1.3759 34 1 5.6519 0.0390 2.1004 35 1 6.2528 0.1840 4.7972 36 1 9.2557 0.9957 -2.6497 37 1 7.9492 0.3337 -4.6657 38 1 5.6479 -0.4885 -4.3832 39 1 4.1161 -2.1385 -0.0094 40 1 1.6551 -2.1327 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065240163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = 27.118671 kcal Electronic energy + Delta-G solvation = -28614.707782 eV Core-core repulsion = 24715.435116 eV Total energy + Delta-G solvation = -3899.272666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.33928 -39.02236 -36.92737 -36.06244 -34.80657 -34.58359 -32.39224 -32.05256 -31.14236 -30.71907 -29.63682 -26.73837 -25.40434 -24.02235 -23.53125 -22.47122 -22.17087 -20.49659 -18.75831 -17.98281 -17.68306 -17.13490 -16.40502 -15.85946 -15.45365 -15.31044 -14.94678 -14.85374 -14.54465 -14.47011 -13.87769 -13.75815 -13.60596 -13.25730 -13.20904 -13.19779 -12.66218 -12.43627 -12.18424 -11.80245 -11.67726 -11.40593 -11.27721 -11.10112 -11.02283 -10.95586 -10.90214 -10.63651 -10.58897 -10.21506 -10.02511 -9.83335 -9.36394 -9.14315 -8.68239 -8.38366 -8.13880 -7.63983 -6.50349 -4.08841 1.08248 1.31982 1.48346 1.57212 1.66477 3.01455 3.18534 3.20403 3.23597 3.76260 3.89151 3.98942 4.19865 4.47937 4.69475 4.81996 4.89819 4.99950 5.02815 5.21277 5.25568 5.32700 5.43729 5.58591 5.61294 5.65358 5.70558 5.79389 5.89461 5.90952 5.98451 6.05486 6.17998 6.26540 6.46895 6.53359 6.66861 6.76954 6.81323 6.90231 7.07434 7.30310 7.40735 7.67974 8.23029 8.28229 8.77002 9.18618 10.58298 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.008207 B = 0.006849 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.820329 B = 4087.070269 C = 6744.600659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.115 4.115 4 C -0.103 4.103 5 C 0.161 3.839 6 N -0.580 5.580 7 C 0.358 3.642 8 N -0.847 5.847 9 C -0.278 4.278 10 H 0.105 0.895 11 C 0.036 3.964 12 N -0.870 5.870 13 Si 0.926 3.074 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.270 1.270 17 S 2.633 3.367 18 O -0.968 6.968 19 O -0.994 6.994 20 C -0.750 4.750 21 C 0.050 3.950 22 C -0.250 4.250 23 C 0.183 3.817 24 N -0.539 5.539 25 C 0.480 3.520 26 C -0.097 4.097 27 C -0.117 4.117 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.274 0.726 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.122 0.878 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -2.159 -9.380 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.123 4.123 5 C 0.070 3.930 6 N -0.292 5.292 7 C 0.150 3.850 8 N -0.680 5.680 9 C -0.414 4.414 10 H 0.123 0.877 11 C -0.171 4.171 12 N -0.510 5.510 13 Si 0.752 3.248 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.195 1.195 17 S 2.731 3.269 18 O -0.959 6.959 19 O -0.981 6.981 20 C -0.841 4.841 21 C 0.023 3.977 22 C -0.273 4.273 23 C 0.021 3.979 24 N -0.256 5.256 25 C 0.246 3.754 26 C -0.117 4.117 27 C -0.135 4.135 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.140 0.860 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.414 -2.414 -8.937 13.203 hybrid contribution 0.239 0.603 -0.029 0.649 sum -9.175 -1.811 -8.966 12.956 Atomic orbital electron populations 1.20749 0.91500 1.02512 1.01949 1.19873 0.95795 0.93218 1.00359 1.20832 0.93470 0.97447 1.01662 1.21436 0.94212 0.97960 0.98671 1.17379 0.82227 0.92819 1.00577 1.45644 1.03990 1.76079 1.03525 1.22034 0.91206 0.89846 0.81881 1.53088 1.35616 1.37589 1.41707 1.19358 1.40481 0.91592 0.89963 0.87737 1.25463 0.97949 0.97080 0.96620 1.69873 1.42198 1.17037 1.21867 0.86006 0.79391 0.80503 0.78938 1.19656 1.20686 1.19455 1.05490 0.73938 0.73751 0.73770 1.93461 1.80659 1.35687 1.86058 1.93485 1.64467 1.57553 1.82628 1.30898 1.09410 1.23505 1.20317 1.20805 0.98362 0.88102 0.90430 1.21856 0.97065 1.09077 0.99323 1.22569 0.91951 0.89525 0.93820 1.67479 1.38652 1.21182 0.98241 1.17649 0.86381 0.85014 0.86372 1.21294 0.94058 0.97523 0.98814 1.20806 0.93507 0.97341 1.01881 0.91498 0.91753 0.91754 0.86147 0.85760 0.90765 0.83918 0.91590 0.84518 0.84556 0.82684 0.86028 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.09 -1.19 5.88 -104.58 -0.62 -1.81 16 3 C -0.12 -1.64 9.69 -39.61 -0.38 -2.02 16 4 C -0.10 -1.76 9.97 -39.38 -0.39 -2.16 16 5 C 0.16 2.90 4.12 -83.74 -0.34 2.55 16 6 N -0.58 -11.64 2.92 -116.41 -0.34 -11.98 16 7 C 0.36 7.99 5.91 -62.40 -0.37 7.62 16 8 N -0.85 -20.77 3.26 -62.22 -0.20 -20.98 16 9 C -0.28 -7.13 9.54 -15.06 -0.14 -7.27 16 10 H 0.11 2.68 7.52 -52.49 -0.39 2.28 16 11 C 0.04 0.89 5.00 -17.43 -0.09 0.80 16 12 N -0.87 -21.88 11.14 55.49 0.62 -21.26 16 13 Si 0.93 19.39 29.59 -169.99 -5.03 14.36 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 17 S 2.63 62.48 5.49 -107.50 -0.59 61.89 16 18 O -0.97 -24.41 17.24 -57.11 -0.98 -25.39 16 19 O -0.99 -25.79 18.05 -57.11 -1.03 -26.82 16 20 C -0.75 -15.33 5.87 -39.40 -0.23 -15.56 16 21 C 0.05 0.85 9.88 -39.41 -0.39 0.46 16 22 C -0.25 -3.48 10.13 -39.37 -0.40 -3.88 16 23 C 0.18 2.63 11.15 -17.66 -0.20 2.43 16 24 N -0.54 -9.62 9.48 -12.44 -0.12 -9.74 16 25 C 0.48 9.60 7.17 -154.75 -1.11 8.49 16 26 C -0.10 -1.54 9.97 -39.38 -0.39 -1.93 16 27 C -0.12 -1.56 9.69 -39.61 -0.38 -1.95 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.14 3.31 5.64 -51.93 -0.29 3.02 16 35 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 37 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 38 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -31.52 352.80 -11.91 -43.43 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.47 Total: 6.07 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -5.08 Total: -14.89 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.04 Total: -63.95 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -2.02 Total: -52.21 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Atomic # 16 Polarization: 62.48 SS G_CDS: -0.59 Total: 61.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.52 -11.91 -43.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065240163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.546 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds