Wall clock time and date at job start Tue Mar 31 2020 07:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46994 * 2 1 4 4 C 1.50700 * 109.47347 * 120.00023 * 2 1 3 5 5 H 1.07996 * 119.99998 * 114.59224 * 4 2 1 6 6 C 1.37884 * 119.99885 * 294.59761 * 4 2 1 7 7 N 1.31516 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47425 * 89.99893 * 8 6 4 10 10 H 1.48493 * 109.47301 * 210.00019 * 8 6 4 11 11 H 1.48500 * 109.47180 * 330.00096 * 8 6 4 12 12 N 1.46902 * 109.46931 * 240.00467 * 2 1 3 13 13 C 1.46844 * 110.99568 * 294.91729 * 12 2 1 14 14 C 1.53035 * 109.52126 * 174.16125 * 13 12 2 15 15 C 1.53123 * 109.27574 * 59.18255 * 14 13 12 16 16 C 1.53117 * 109.16338 * 302.34642 * 15 14 13 17 17 H 1.09001 * 109.53280 * 297.69224 * 16 15 14 18 18 C 1.50696 * 109.50538 * 177.59628 * 16 15 14 19 19 N 1.30977 * 126.44106 * 120.19780 * 18 16 15 20 20 C 1.35215 * 105.57811 * 180.02562 * 19 18 16 21 21 C 1.48433 * 126.40999 * 180.02562 * 20 19 18 22 22 C 1.39348 * 120.10334 * 179.97438 * 21 20 19 23 23 C 1.38013 * 119.92755 * 180.02562 * 22 21 20 24 24 C 1.38302 * 120.15033 * 0.24604 * 23 22 21 25 25 C 1.38522 * 120.20879 * 359.49632 * 24 23 22 26 26 F 1.35104 * 119.96145 * 180.25489 * 25 24 23 27 27 C 1.38265 * 120.07111 * 0.50298 * 25 24 23 28 28 N 1.30758 * 107.17409 * 0.25524 * 20 19 18 29 29 O 1.21283 * 110.09781 * 359.55133 * 28 20 19 30 30 C 1.46851 * 110.99602 * 170.71297 * 12 2 1 31 31 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47013 * 299.99597 * 1 2 3 33 33 H 1.08994 * 109.47189 * 59.99570 * 1 2 3 34 34 H 0.97001 * 119.99676 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46596 * 294.18297 * 13 12 2 36 36 H 1.08997 * 109.46269 * 54.15170 * 13 12 2 37 37 H 1.09002 * 109.50865 * 179.11899 * 14 13 12 38 38 H 1.09000 * 109.50533 * 299.20415 * 14 13 12 39 39 H 1.09002 * 109.52344 * 182.44138 * 15 14 13 40 40 H 1.09002 * 109.52426 * 62.25467 * 15 14 13 41 41 H 1.08004 * 120.03684 * 0.03414 * 22 21 20 42 42 H 1.07997 * 119.92242 * 179.97438 * 23 22 21 43 43 H 1.07990 * 119.89717 * 179.72690 * 24 23 22 44 44 H 1.07999 * 120.07286 * 179.72193 * 27 25 24 45 45 H 1.09002 * 109.46369 * 65.82181 * 30 12 2 46 46 H 1.08994 * 109.45447 * 305.84663 * 30 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5794 -1.6366 1.1337 6 6 1.7936 -0.1779 2.4797 7 7 1.1279 0.9501 2.5974 8 14 2.4157 -1.0589 4.0049 9 1 3.7811 -0.5760 4.3332 10 1 1.5048 -0.7798 5.1439 11 1 2.4559 -2.5213 3.7500 12 7 2.0196 -0.6924 -1.1995 13 6 1.6504 -2.1135 -1.1743 14 6 2.0471 -2.7685 -2.4993 15 6 3.5569 -2.6178 -2.7056 16 6 3.9218 -1.1309 -2.6794 17 1 3.4222 -0.6185 -3.5015 18 6 5.4139 -0.9765 -2.8227 19 7 6.0414 -0.3317 -3.7746 20 6 7.3578 -0.4609 -3.4940 21 6 8.4854 0.0977 -4.2812 22 6 9.7992 -0.1165 -3.8691 23 6 10.8449 0.4050 -4.6035 24 6 10.5917 1.1440 -5.7447 25 6 9.2882 1.3562 -6.1627 26 9 9.0467 2.0746 -7.2811 27 6 8.2338 0.8379 -5.4337 28 7 7.4516 -1.1742 -2.4021 29 8 6.3459 -1.4722 -2.0027 30 6 3.4707 -0.5233 -1.3492 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 0.9596 1.3245 3.4763 35 1 2.1698 -2.6092 -0.3542 36 1 0.5739 -2.2065 -1.0312 37 1 1.7872 -3.8268 -2.4743 38 1 1.5170 -2.2827 -3.3185 39 1 3.8374 -3.0447 -3.6685 40 1 4.0873 -3.1372 -1.9075 41 1 9.9990 -0.6902 -2.9761 42 1 11.8631 0.2392 -4.2839 43 1 11.4128 1.5539 -6.3138 44 1 7.2174 1.0071 -5.7571 45 1 3.9816 -1.0266 -0.5283 46 1 3.7160 0.5385 -1.3332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065476015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:29 Heat of formation + Delta-G solvation = 46.657401 kcal Electronic energy + Delta-G solvation = -29582.200922 eV Core-core repulsion = 25389.228532 eV Total energy + Delta-G solvation = -4192.972390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.21920 -45.57944 -39.39888 -38.75666 -35.92808 -34.91488 -33.09644 -31.85387 -31.36699 -30.91140 -29.91487 -28.54278 -25.20379 -25.12345 -24.51510 -23.53125 -22.86204 -22.71440 -21.40326 -20.04174 -19.21472 -18.07717 -18.04817 -17.13220 -16.58607 -16.50266 -16.24873 -15.92336 -15.53548 -14.94261 -14.91729 -14.49347 -14.26249 -14.03909 -13.59299 -13.49740 -13.35962 -13.17374 -13.03438 -12.68801 -12.53088 -12.20732 -11.90727 -11.83081 -11.66186 -11.43046 -11.22646 -11.08507 -11.01412 -10.93279 -10.63204 -10.59467 -10.50627 -10.32909 -10.03260 -9.84785 -9.61375 -9.30078 -9.22513 -8.99944 -8.44705 -7.27052 -6.05547 -4.17096 0.29132 0.76957 1.24818 2.23874 2.79346 3.20970 3.24534 3.28788 3.32219 3.34414 3.66067 4.01866 4.36376 4.43089 4.49562 4.69976 4.72878 4.90527 4.91375 4.93234 5.12779 5.20308 5.22667 5.36731 5.50830 5.60197 5.62044 5.67855 5.68769 5.80648 5.84700 5.93261 5.97953 6.09780 6.13549 6.23870 6.26483 6.39980 6.49208 6.57527 6.77968 6.88621 7.00165 7.12472 7.45928 7.65606 7.85236 8.05033 8.07164 8.19127 8.35816 8.92158 9.51151 10.96856 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.002413 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.546933 B =11601.505619 C =12228.762068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.208 3.792 3 H 0.043 0.957 4 C -0.546 4.546 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.533 5.533 13 C 0.054 3.946 14 C -0.114 4.114 15 C -0.113 4.113 16 C 0.003 3.997 17 H 0.122 0.878 18 C 0.216 3.784 19 N -0.479 5.479 20 C 0.200 3.800 21 C 0.016 3.984 22 C -0.096 4.096 23 C -0.092 4.092 24 C -0.139 4.139 25 C 0.097 3.903 26 F -0.135 7.135 27 C -0.112 4.112 28 N -0.374 5.374 29 O 0.089 5.911 30 C 0.071 3.929 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.150 0.850 45 H 0.049 0.951 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 -3.536 -15.433 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.102 3.898 3 H 0.061 0.939 4 C -0.585 4.585 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.524 5.524 8 Si 0.714 3.286 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.257 5.257 13 C -0.074 4.074 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.018 4.018 17 H 0.140 0.860 18 C -0.005 4.005 19 N -0.212 5.212 20 C -0.070 4.070 21 C 0.014 3.986 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.159 4.159 25 C 0.078 3.922 26 F -0.114 7.114 27 C -0.133 4.133 28 N -0.080 5.080 29 O 0.028 5.972 30 C -0.059 4.059 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.067 0.933 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.386 -3.132 -15.725 21.542 hybrid contribution 0.586 -0.631 1.585 1.804 sum 14.972 -3.763 -14.140 20.934 Atomic orbital electron populations 1.21737 0.97656 0.99071 0.99922 1.19283 0.92270 0.94265 0.83972 0.93939 1.21702 1.36122 1.08860 0.91816 0.92348 1.24907 0.94787 0.94743 0.98908 1.69909 1.39887 1.18822 1.23777 0.86694 0.78774 0.80147 0.83011 1.20704 1.21173 1.19933 1.62405 1.09566 1.11368 1.42368 1.22011 1.01226 0.89420 0.94733 1.21624 0.93814 1.00246 0.99559 1.21655 0.98380 0.93006 1.02062 1.20191 0.79009 0.99396 1.03213 0.86046 1.28988 0.97141 0.90018 0.84357 1.72017 1.02334 1.21843 1.24987 1.23716 0.91384 0.98727 0.93153 1.17065 0.89299 0.98526 0.93694 1.21289 0.90752 0.99266 1.00302 1.20943 0.99624 0.96484 0.93933 1.21326 0.95394 1.00722 0.98421 1.17477 0.93657 0.95819 0.85230 1.91531 1.95234 1.75471 1.49118 1.21178 1.00148 0.97625 0.94324 1.74869 1.02186 1.17179 1.13790 1.85302 1.10521 1.56740 1.44671 1.21838 0.91519 1.00336 0.92229 0.95231 0.90689 0.96339 0.92838 0.93924 0.90671 0.91658 0.91288 0.91820 0.91200 0.84347 0.84111 0.84194 0.83242 0.93291 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.93 37.16 0.33 -2.52 16 2 C 0.21 4.87 2.22 -68.86 -0.15 4.72 16 3 H 0.04 1.12 8.00 -51.92 -0.42 0.70 16 4 C -0.55 -13.90 7.17 -34.44 -0.25 -14.15 16 5 H 0.06 1.48 5.85 -52.49 -0.31 1.18 16 6 C 0.07 1.84 5.32 -17.82 -0.09 1.74 16 7 N -0.89 -24.44 11.73 55.43 0.65 -23.79 16 8 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.53 -10.27 4.61 -228.08 -1.05 -11.32 16 13 C 0.05 0.94 4.79 -3.84 -0.02 0.92 16 14 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 15 C -0.11 -1.42 5.27 -26.61 -0.14 -1.56 16 16 C 0.00 0.04 2.82 -91.70 -0.26 -0.22 16 17 H 0.12 1.66 8.14 -51.93 -0.42 1.23 16 18 C 0.22 3.20 7.01 -12.99 -0.09 3.11 16 19 N -0.48 -7.26 11.26 -9.89 -0.11 -7.37 16 20 C 0.20 2.92 7.80 -156.12 -1.22 1.71 16 21 C 0.02 0.19 5.88 -104.90 -0.62 -0.42 16 22 C -0.10 -0.95 9.69 -39.25 -0.38 -1.33 16 23 C -0.09 -0.68 10.03 -39.64 -0.40 -1.08 16 24 C -0.14 -1.09 10.02 -39.45 -0.40 -1.48 16 25 C 0.10 0.97 7.29 -39.47 -0.29 0.68 16 26 F -0.14 -1.42 17.27 2.25 0.04 -1.39 16 27 C -0.11 -1.26 9.68 -39.19 -0.38 -1.64 16 28 N -0.37 -5.76 11.86 30.96 0.37 -5.39 16 29 O 0.09 1.38 11.29 18.03 0.20 1.59 16 30 C 0.07 1.25 4.45 -3.83 -0.02 1.23 16 31 H 0.03 0.63 6.41 -51.93 -0.33 0.30 16 32 H 0.07 1.89 6.51 -51.93 -0.34 1.55 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.04 0.81 6.32 -51.93 -0.33 0.48 16 36 H 0.07 1.34 6.18 -51.93 -0.32 1.02 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.14 1.30 7.87 -52.48 -0.41 0.88 16 42 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.15 1.70 7.88 -52.49 -0.41 1.29 16 45 H 0.05 0.94 7.36 -51.93 -0.38 0.56 16 46 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -28.00 377.02 -9.95 -37.96 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.19 Total: 0.35 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -4.53 Total: -11.96 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.15 Total: -47.87 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.20 Total: 1.59 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.00 -9.95 -37.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065476015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.614 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds