Wall clock time and date at job start Tue Mar 31 2020 07:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46754 * 2 1 4 4 C 1.50705 * 109.47243 * 240.00255 * 2 1 3 5 5 H 1.07998 * 120.00043 * 239.99733 * 4 2 1 6 6 C 1.37877 * 119.99728 * 59.99712 * 4 2 1 7 7 N 1.31515 * 120.00438 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99888 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47342 * 90.00127 * 8 6 4 10 10 H 1.48502 * 109.47425 * 210.00497 * 8 6 4 11 11 H 1.48506 * 109.47187 * 330.00071 * 8 6 4 12 12 N 1.46901 * 109.47415 * 120.00084 * 2 1 3 13 13 C 1.46850 * 110.99692 * 64.20885 * 12 2 1 14 14 C 1.53034 * 109.51964 * 174.16117 * 13 12 2 15 15 C 1.53113 * 109.27745 * 59.18276 * 14 13 12 16 16 C 1.53120 * 109.16261 * 302.34054 * 15 14 13 17 17 H 1.08993 * 109.53374 * 297.69479 * 16 15 14 18 18 C 1.50703 * 109.50433 * 177.59292 * 16 15 14 19 19 N 1.30974 * 126.43423 * 120.19464 * 18 16 15 20 20 C 1.35221 * 105.57879 * 179.97438 * 19 18 16 21 21 C 1.48424 * 126.41282 * 180.02562 * 20 19 18 22 22 C 1.39355 * 120.10568 * 180.02562 * 21 20 19 23 23 C 1.38010 * 119.92948 * 180.02562 * 22 21 20 24 24 C 1.38297 * 120.14713 * 0.26092 * 23 22 21 25 25 C 1.38520 * 120.21796 * 359.48017 * 24 23 22 26 26 F 1.35102 * 119.97096 * 180.25720 * 25 24 23 27 27 C 1.38273 * 120.06547 * 0.51848 * 25 24 23 28 28 N 1.30752 * 107.16859 * 0.27190 * 20 19 18 29 29 O 1.21291 * 110.10205 * 359.53522 * 28 20 19 30 30 C 1.46844 * 110.99941 * 300.00181 * 12 2 1 31 31 H 1.09000 * 109.47293 * 60.00112 * 1 2 3 32 32 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47066 * 299.99864 * 1 2 3 34 34 H 0.97001 * 120.00216 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46378 * 294.18176 * 13 12 2 36 36 H 1.08999 * 109.46007 * 54.16176 * 13 12 2 37 37 H 1.09000 * 109.49962 * 179.12200 * 14 13 12 38 38 H 1.08992 * 109.50404 * 299.20050 * 14 13 12 39 39 H 1.09008 * 109.52645 * 182.43688 * 15 14 13 40 40 H 1.09004 * 109.52881 * 62.24851 * 15 14 13 41 41 H 1.08002 * 120.03092 * 0.04635 * 22 21 20 42 42 H 1.08002 * 119.92239 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.89274 * 179.72307 * 24 23 22 44 44 H 1.08000 * 120.07411 * 179.72276 * 27 25 24 45 45 H 1.09010 * 109.46233 * 65.82098 * 30 12 2 46 46 H 1.08999 * 109.45285 * 305.85163 * 30 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.3449 -2.1614 -4.4125 10 1 2.4873 -0.1399 -5.1121 11 1 3.6310 -1.7563 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 1.6328 -2.1090 1.1840 14 6 2.2801 -2.8288 2.3693 15 6 1.8217 -2.1694 3.6728 16 6 2.1937 -0.6843 3.6428 17 1 3.2770 -0.5812 3.5824 18 6 1.6935 -0.0149 4.8969 19 7 2.4225 0.6035 5.7922 20 6 1.5520 1.0408 6.7301 21 6 1.8894 1.8039 7.9577 22 6 0.8819 2.1900 8.8397 23 6 1.1996 2.8999 9.9797 24 6 2.5150 3.2337 10.2461 25 6 3.5219 2.8484 9.3763 26 9 4.8058 3.1727 9.6441 27 6 3.2137 2.1369 8.2315 28 7 0.3583 0.6608 6.3558 29 8 0.4227 0.0598 5.3042 30 6 1.5489 -0.0267 2.4206 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7088 1.1615 -3.4844 35 1 0.5484 -2.1901 1.2580 36 1 1.9686 -2.5671 0.2537 37 1 1.9802 -3.8767 2.3664 38 1 3.3649 -2.7606 2.2881 39 1 2.3140 -2.6511 4.5177 40 1 0.7411 -2.2722 3.7728 41 1 -0.1463 1.9336 8.6314 42 1 0.4187 3.1994 10.6630 43 1 2.7585 3.7933 11.1372 44 1 3.9981 1.8403 7.5509 45 1 0.4647 -0.1175 2.4889 46 1 1.8236 1.0276 2.3882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065476017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:34 Heat of formation + Delta-G solvation = 50.170241 kcal Electronic energy + Delta-G solvation = -29421.318923 eV Core-core repulsion = 25228.498861 eV Total energy + Delta-G solvation = -4192.820062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.24599 -45.65453 -39.43873 -38.88072 -35.99895 -34.97660 -33.14195 -31.96002 -31.42379 -30.96903 -29.91320 -28.27867 -25.43106 -25.18489 -24.50283 -23.66925 -22.93384 -22.77484 -21.43116 -20.36028 -18.90753 -18.16794 -18.12119 -17.20725 -16.62416 -16.53934 -16.13156 -15.95073 -15.62331 -14.98828 -14.97686 -14.41875 -14.19249 -14.05674 -13.73876 -13.63984 -13.55584 -13.21973 -12.88631 -12.78643 -12.44718 -12.25748 -12.01677 -11.84424 -11.74996 -11.68005 -11.32893 -11.13736 -11.03545 -10.89184 -10.75387 -10.55861 -10.46827 -10.38215 -10.21546 -9.89066 -9.64986 -9.33702 -9.04611 -8.88557 -8.43697 -7.26893 -6.05439 -4.09905 0.24332 0.73421 1.17657 2.18162 2.71248 3.15402 3.24561 3.28266 3.35647 3.38785 3.60553 3.97665 4.35255 4.41104 4.45813 4.65642 4.68540 4.84292 4.86420 4.88992 5.04959 5.15808 5.26815 5.31955 5.45357 5.56024 5.57133 5.60064 5.64226 5.76151 5.78215 5.87872 5.93434 6.03560 6.11298 6.12498 6.16367 6.27171 6.36434 6.62219 6.65965 6.79380 6.82611 7.06904 7.44004 7.67122 7.75486 7.99653 8.03442 8.30914 8.50751 8.95445 9.55456 11.01613 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.002078 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.104092 B =13468.468126 C =13655.167315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.213 3.787 3 H 0.041 0.959 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.527 5.527 13 C 0.055 3.945 14 C -0.115 4.115 15 C -0.113 4.113 16 C 0.004 3.996 17 H 0.125 0.875 18 C 0.214 3.786 19 N -0.478 5.478 20 C 0.202 3.798 21 C 0.015 3.985 22 C -0.096 4.096 23 C -0.092 4.092 24 C -0.139 4.139 25 C 0.098 3.902 26 F -0.135 7.135 27 C -0.112 4.112 28 N -0.375 5.375 29 O 0.086 5.914 30 C 0.060 3.940 31 H 0.088 0.912 32 H 0.030 0.970 33 H 0.009 0.991 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.150 0.850 45 H 0.040 0.960 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 0.116 23.165 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.107 3.893 3 H 0.059 0.941 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.251 5.251 13 C -0.073 4.073 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.016 4.016 17 H 0.142 0.858 18 C -0.007 4.007 19 N -0.210 5.210 20 C -0.068 4.068 21 C 0.013 3.987 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.158 4.158 25 C 0.079 3.921 26 F -0.113 7.113 27 C -0.132 4.132 28 N -0.081 5.081 29 O 0.025 5.975 30 C -0.070 4.070 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.058 0.942 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.588 0.592 23.639 23.654 hybrid contribution -0.436 -0.331 -0.946 1.093 sum 0.152 0.261 22.693 22.695 Atomic orbital electron populations 1.22418 1.00752 0.99406 1.00688 1.19306 0.89805 0.94685 0.85498 0.94069 1.21113 1.30881 1.12586 0.89591 0.91699 1.24931 0.95179 0.95070 0.99057 1.69883 1.36884 1.22902 1.23498 0.86524 0.79242 0.79266 0.82531 1.20817 1.21319 1.19804 1.62253 1.59499 1.01795 1.01548 1.22066 0.97056 0.89750 0.98398 1.21633 1.01709 0.98513 0.93472 1.21672 1.01771 0.92305 0.99380 1.20160 1.02582 0.94407 0.84500 0.85750 1.29011 0.79437 0.94415 0.97808 1.72033 1.31056 1.14970 1.02927 1.23729 0.85193 1.00773 0.97114 1.17061 0.93195 0.98032 0.90425 1.21281 0.99528 0.97295 0.93494 1.20943 0.95841 0.97343 0.96858 1.21335 0.92552 1.01708 1.00207 1.17480 0.79088 0.99856 0.95713 1.91534 1.35257 1.90814 1.93705 1.21189 0.96917 0.98363 0.96775 1.74864 1.21963 1.12533 0.98750 1.85288 1.31123 1.53679 1.27369 1.22003 0.97129 0.98409 0.89460 0.89291 0.95121 0.97216 0.92945 0.95404 0.89051 0.91558 0.90969 0.91690 0.91355 0.84367 0.84089 0.84165 0.83220 0.94237 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.28 37.16 0.31 -3.68 16 2 C 0.21 5.03 2.41 -68.86 -0.17 4.87 16 3 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.50 -12.97 7.86 -34.44 -0.27 -13.24 16 5 H 0.06 1.65 6.40 -52.49 -0.34 1.32 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.53 -10.24 4.67 -228.07 -1.07 -11.31 16 13 C 0.06 0.96 4.75 -3.83 -0.02 0.94 16 14 C -0.12 -1.53 6.09 -26.66 -0.16 -1.69 16 15 C -0.11 -1.37 5.27 -26.61 -0.14 -1.51 16 16 C 0.00 0.06 2.82 -91.69 -0.26 -0.20 16 17 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 18 C 0.21 3.01 7.01 -12.99 -0.09 2.92 16 19 N -0.48 -6.97 11.26 -9.89 -0.11 -7.08 16 20 C 0.20 2.81 7.80 -156.12 -1.22 1.60 16 21 C 0.01 0.17 5.88 -104.90 -0.62 -0.45 16 22 C -0.10 -0.89 9.69 -39.25 -0.38 -1.27 16 23 C -0.09 -0.64 10.03 -39.64 -0.40 -1.04 16 24 C -0.14 -1.03 10.02 -39.46 -0.40 -1.42 16 25 C 0.10 0.94 7.29 -39.46 -0.29 0.65 16 26 F -0.13 -1.39 17.27 2.25 0.04 -1.35 16 27 C -0.11 -1.21 9.68 -39.18 -0.38 -1.59 16 28 N -0.38 -5.42 11.86 30.96 0.37 -5.05 16 29 O 0.09 1.25 11.29 18.05 0.20 1.45 16 30 C 0.06 1.00 4.15 -3.84 -0.02 0.98 16 31 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 32 H 0.03 0.68 6.63 -51.93 -0.34 0.33 16 33 H 0.01 0.19 6.54 -51.93 -0.34 -0.15 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.03 0.49 6.71 -51.93 -0.35 0.15 16 36 H 0.09 1.75 6.02 -51.93 -0.31 1.44 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.14 1.20 7.87 -52.49 -0.41 0.79 16 42 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.15 1.66 7.88 -52.49 -0.41 1.24 16 45 H 0.04 0.67 6.63 -51.92 -0.34 0.33 16 46 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -28.14 375.01 -10.00 -38.14 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.11 Total: 0.66 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -4.58 Total: -12.67 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.18 Total: -47.48 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.14 -10.00 -38.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065476017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.306 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds