Wall clock time and date at job start Tue Mar 31 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33729 * 122.24653 * 2 1 4 4 C 1.46987 * 124.61977 * 0.02562 * 3 2 1 5 5 O 1.21650 * 120.00217 * 359.72767 * 4 3 2 6 6 N 1.34784 * 119.99985 * 179.72101 * 4 3 2 7 7 C 1.46497 * 119.99825 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47600 * 325.00025 * 7 6 4 9 9 C 1.53003 * 109.46816 * 85.00475 * 7 6 4 10 10 C 1.50698 * 109.47039 * 205.00037 * 7 6 4 11 11 H 1.08009 * 119.99871 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00300 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99588 * 359.97438 * 12 10 7 14 14 Si 1.86804 * 120.00108 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47042 * 89.99649 * 14 12 10 16 16 H 1.48504 * 109.46769 * 209.99780 * 14 12 10 17 17 H 1.48497 * 109.46832 * 329.99552 * 14 12 10 18 18 S 1.75524 * 110.75648 * 179.75860 * 3 2 1 19 19 C 1.75815 * 91.64663 * 0.22695 * 18 3 2 20 20 N 1.33599 * 131.37958 * 180.02562 * 19 18 3 21 21 C 1.31284 * 120.86568 * 179.97438 * 20 19 18 22 22 C 1.50696 * 118.95694 * 180.02562 * 21 20 19 23 23 C 1.53003 * 117.49603 * 8.74253 * 22 21 20 24 24 C 1.53004 * 117.49517 * 300.08537 * 22 21 20 25 25 N 1.32205 * 122.09359 * 359.97321 * 21 20 19 26 26 C 1.31633 * 121.43718 * 0.02782 * 25 21 20 27 27 C 1.50701 * 120.44426 * 180.02562 * 26 25 21 28 28 C 1.40182 * 122.25476 * 180.17775 * 2 1 3 29 29 H 1.08996 * 109.47465 * 95.58069 * 1 2 3 30 30 H 1.09005 * 109.46669 * 215.58601 * 1 2 3 31 31 H 1.09003 * 109.47172 * 335.57876 * 1 2 3 32 32 H 0.96996 * 119.99486 * 0.02562 * 6 4 3 33 33 H 1.09005 * 109.47016 * 179.97438 * 9 7 6 34 34 H 1.08995 * 109.47559 * 59.99901 * 9 7 6 35 35 H 1.08997 * 109.46988 * 299.99214 * 9 7 6 36 36 H 0.97006 * 119.99714 * 179.97438 * 13 12 10 37 37 H 1.08998 * 115.55526 * 154.41403 * 22 21 20 38 38 H 1.09000 * 117.50139 * 0.02562 * 23 22 21 39 39 H 1.08996 * 117.49715 * 145.02764 * 23 22 21 40 40 H 1.08995 * 117.49751 * 214.97881 * 24 22 21 41 41 H 1.09001 * 117.49779 * 359.97438 * 24 22 21 42 42 H 1.09004 * 109.47101 * 95.89157 * 27 26 25 43 43 H 1.08992 * 109.47050 * 215.89552 * 27 26 25 44 44 H 1.09001 * 109.46856 * 335.89926 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2205 1.1310 0.0000 4 6 1.6430 2.4827 0.0005 5 8 0.4353 2.6282 -0.0040 6 7 2.4516 3.5610 0.0062 7 6 1.8760 4.9082 0.0073 8 1 0.9614 4.9131 -0.5856 9 6 1.5548 5.3243 1.4442 10 6 2.8650 5.8775 -0.5871 11 1 3.8265 5.5252 -0.9310 12 6 2.5431 7.2141 -0.6911 13 7 1.3727 7.6430 -0.2720 14 14 3.7688 8.4154 -1.4287 15 1 3.5533 8.5046 -2.8952 16 1 3.5774 9.7554 -0.8177 17 1 5.1500 7.9412 -1.1592 18 16 3.9405 0.7814 0.0069 19 6 3.6400 -0.9509 0.0028 20 7 4.4767 -1.9924 0.0052 21 6 4.0200 -3.2232 0.0016 22 6 5.0024 -4.3660 0.0051 23 6 6.4791 -4.0273 0.2189 24 6 5.9845 -4.4567 -1.1647 25 7 2.7256 -3.4922 -0.0040 26 6 1.8250 -2.5322 -0.0068 27 6 0.3550 -2.8642 -0.0126 28 6 2.2551 -1.1855 -0.0037 29 1 -0.3634 -0.0999 -1.0227 30 1 -0.3633 -0.8358 0.5981 31 1 -0.3634 0.9357 0.4249 32 1 3.4146 3.4450 0.0095 33 1 1.1269 6.3268 1.4451 34 1 2.4694 5.3195 2.0370 35 1 0.8394 4.6232 1.8741 36 1 1.1463 8.5834 -0.3448 37 1 4.6344 -5.3012 0.4269 38 1 6.7400 -2.9781 0.3575 39 1 7.0825 -4.7400 0.7810 40 1 6.2628 -5.4517 -1.5121 41 1 5.9197 -3.6902 -1.9369 42 1 -0.0265 -2.8421 1.0083 43 1 -0.1805 -2.1319 -0.6166 44 1 0.2090 -3.8591 -0.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065522755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:19 Heat of formation + Delta-G solvation = 51.718238 kcal Electronic energy + Delta-G solvation = -27008.649038 eV Core-core repulsion = 23246.276184 eV Total energy + Delta-G solvation = -3762.372854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.56921 -39.37205 -37.86108 -36.27604 -34.86518 -34.61407 -32.55549 -31.25759 -29.85293 -29.32913 -27.11491 -25.63586 -25.31606 -23.98594 -22.66585 -22.44231 -21.03866 -20.03661 -19.66658 -18.81204 -17.31026 -17.04724 -16.51072 -15.89004 -15.60615 -15.28344 -15.10289 -14.85590 -14.48497 -14.27008 -13.81794 -13.55696 -13.41694 -13.25549 -13.12722 -12.86537 -12.50851 -12.44685 -11.96942 -11.86347 -11.78411 -11.72626 -11.31640 -11.13051 -11.04288 -10.98765 -10.91993 -10.81997 -10.75437 -10.60640 -10.36260 -10.29245 -9.43541 -9.22561 -9.14590 -9.02121 -8.62522 -8.20304 -8.03641 -6.18687 -4.28359 -0.05886 0.68286 0.92319 1.64757 1.71310 3.14078 3.21779 3.28538 3.30419 3.41455 3.58552 3.69347 3.74240 3.89105 4.27105 4.29635 4.45774 4.56089 4.60587 4.71113 4.82739 5.10516 5.14323 5.21258 5.22411 5.32474 5.34344 5.44083 5.46622 5.59749 5.65553 5.72348 5.76670 5.91549 6.03119 6.07631 6.47406 6.68342 6.74832 6.87417 7.04535 7.28205 7.42548 7.60573 7.80811 7.81109 8.05658 8.45501 8.64794 8.87977 9.38912 10.87313 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.002685 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.948527 B =10426.226964 C =11769.524221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.003 4.003 3 C -0.222 4.222 4 C 0.575 3.425 5 O -0.529 6.529 6 N -0.697 5.697 7 C 0.265 3.735 8 H 0.053 0.947 9 C -0.148 4.148 10 C -0.537 4.537 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.882 5.882 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 S 0.204 5.796 19 C 0.093 3.907 20 N -0.492 5.492 21 C 0.369 3.631 22 C -0.101 4.101 23 C -0.153 4.153 24 C -0.154 4.154 25 N -0.523 5.523 26 C 0.250 3.750 27 C -0.120 4.120 28 C -0.188 4.188 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.387 0.613 33 H 0.093 0.907 34 H 0.028 0.972 35 H 0.016 0.984 36 H 0.265 0.735 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 -23.009 1.096 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.017 4.017 3 C -0.341 4.341 4 C 0.358 3.642 5 O -0.409 6.409 6 N -0.344 5.344 7 C 0.164 3.836 8 H 0.071 0.929 9 C -0.207 4.207 10 C -0.575 4.575 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.519 5.519 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 S 0.467 5.533 19 C -0.159 4.159 20 N -0.208 5.208 21 C 0.098 3.902 22 C -0.121 4.121 23 C -0.191 4.191 24 C -0.193 4.193 25 N -0.238 5.238 26 C 0.094 3.906 27 C -0.177 4.177 28 C -0.203 4.203 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.220 0.780 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.248 -22.355 1.126 22.990 hybrid contribution -0.488 0.433 -0.375 0.753 sum 4.760 -21.922 0.751 22.445 Atomic orbital electron populations 1.21311 0.88144 1.06006 1.03092 1.18664 0.98270 0.88792 0.96005 1.24131 0.96769 0.98906 1.14314 1.16937 0.86844 0.82207 0.78173 1.90686 1.13460 1.85113 1.51666 1.46545 1.08921 1.07723 1.71189 1.18861 0.95313 0.75065 0.94349 0.92876 1.22097 0.98507 1.03000 0.97088 1.21189 1.01825 0.92570 1.41955 0.91985 1.24872 0.95553 0.98108 0.95024 1.69895 1.20549 1.15837 1.45665 0.86427 0.81164 0.80143 0.79281 1.20485 1.20994 1.19757 1.84376 1.02740 0.91873 1.74295 1.24149 0.92014 1.00020 0.99714 1.67641 1.38250 0.98183 1.16774 1.22047 0.88595 0.89677 0.89837 1.20622 0.89001 0.95800 1.06647 1.23061 0.93352 1.03831 0.98854 1.23019 1.01041 1.03330 0.91879 1.67802 1.02295 1.36537 1.17192 1.21842 0.96843 0.86111 0.85837 1.21207 0.87952 1.04304 1.04277 1.19454 0.94155 0.95962 1.10705 0.90254 0.91004 0.86924 0.78028 0.88858 0.95309 0.96465 0.92466 0.85054 0.87152 0.88004 0.87771 0.88499 0.88815 0.88488 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 7.90 36.00 0.28 -1.35 16 2 C 0.00 -0.05 5.85 -105.48 -0.62 -0.66 16 3 C -0.22 -3.65 6.32 -37.62 -0.24 -3.88 16 4 C 0.57 11.44 7.74 -12.71 -0.10 11.34 16 5 O -0.53 -11.74 13.47 5.23 0.07 -11.67 16 6 N -0.70 -14.55 5.06 -56.15 -0.28 -14.83 16 7 C 0.27 6.59 2.56 -69.08 -0.18 6.42 16 8 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 9 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 10 C -0.54 -14.00 8.73 -34.44 -0.30 -14.31 16 11 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 12 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 13 N -0.88 -24.31 11.32 55.43 0.63 -23.68 16 14 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 S 0.20 2.93 22.25 -107.50 -2.39 0.54 16 19 C 0.09 1.37 7.71 -15.94 -0.12 1.25 16 20 N -0.49 -6.98 9.36 -9.32 -0.09 -7.06 16 21 C 0.37 4.76 7.31 -157.28 -1.15 3.61 16 22 C -0.10 -0.96 6.23 -91.77 -0.57 -1.53 16 23 C -0.15 -1.25 10.01 -26.69 -0.27 -1.52 16 24 C -0.15 -1.23 10.24 -26.69 -0.27 -1.50 16 25 N -0.52 -6.73 10.21 -6.48 -0.07 -6.80 16 26 C 0.25 3.08 6.90 -81.49 -0.56 2.52 16 27 C -0.12 -1.00 8.57 36.01 0.31 -0.70 16 28 C -0.19 -2.65 5.85 -107.14 -0.63 -3.28 16 29 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 30 H 0.07 0.70 5.54 -51.93 -0.29 0.41 16 31 H 0.11 1.76 5.38 -51.93 -0.28 1.48 16 32 H 0.39 7.24 7.58 -40.82 -0.31 6.93 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.11 1.07 7.53 -51.93 -0.39 0.68 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.65 7.83 -51.93 -0.41 0.25 16 43 H 0.10 0.74 5.50 -51.93 -0.29 0.45 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -30.34 372.92 -11.27 -41.61 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.58 Total: 6.07 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -4.16 Total: -5.14 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.19 Total: -52.37 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.39 Total: 0.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.34 -11.27 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065522755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.331 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds