Wall clock time and date at job start Tue Mar 31 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00060 * 2 1 4 4 C 1.50695 * 109.47629 * 66.04357 * 3 2 1 5 5 O 1.21284 * 119.99804 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00423 * 180.02562 * 4 3 2 7 7 C 1.47020 * 125.64851 * 359.69073 * 6 4 3 8 8 C 1.54316 * 107.27775 * 180.97049 * 7 6 4 9 9 C 1.55150 * 102.86453 * 22.52449 * 8 7 6 10 10 C 1.47424 * 125.64996 * 179.97438 * 6 4 3 11 11 C 1.38107 * 111.00326 * 236.04157 * 2 1 3 12 12 N 1.32858 * 120.81448 * 123.93172 * 11 2 1 13 13 C 1.32123 * 121.19451 * 180.02562 * 12 11 2 14 14 N 1.31510 * 122.64648 * 0.02562 * 13 12 11 15 15 C 1.33199 * 120.68256 * 0.02562 * 14 13 12 16 16 C 1.40818 * 120.81214 * 303.95689 * 11 2 1 17 17 C 1.41168 * 134.69640 * 0.03213 * 16 11 2 18 18 N 1.30249 * 108.46928 * 180.20253 * 17 16 11 19 19 N 1.36308 * 134.61923 * 179.97438 * 15 14 13 20 20 C 1.46510 * 125.87260 * 0.07553 * 19 15 14 21 21 C 1.50695 * 109.46809 * 90.00139 * 20 19 15 22 22 H 1.07999 * 120.00635 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99588 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99888 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46907 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47364 * 119.99534 * 25 23 21 28 28 H 1.48504 * 109.46836 * 239.99648 * 25 23 21 29 29 H 1.09003 * 109.47441 * 183.95322 * 1 2 3 30 30 H 1.08995 * 109.47434 * 303.95859 * 1 2 3 31 31 H 1.09008 * 109.47046 * 63.95911 * 1 2 3 32 32 H 1.09004 * 109.47275 * 186.04909 * 3 2 1 33 33 H 1.09005 * 109.47118 * 306.03961 * 3 2 1 34 34 H 1.09003 * 109.88206 * 300.51531 * 7 6 4 35 35 H 1.09002 * 109.88570 * 61.67495 * 7 6 4 36 36 H 1.09002 * 110.92275 * 264.11033 * 8 7 6 37 37 H 1.09000 * 110.58843 * 140.78736 * 8 7 6 38 38 H 1.08997 * 111.00587 * 206.23329 * 9 8 7 39 39 H 1.08996 * 111.00441 * 82.37803 * 9 8 7 40 40 H 1.09007 * 110.36818 * 274.66883 * 10 6 4 41 41 H 1.08997 * 110.36608 * 36.88623 * 10 6 4 42 42 H 1.08001 * 118.67993 * 179.97438 * 13 12 11 43 43 H 1.08002 * 125.76328 * 359.93061 * 17 16 11 44 44 H 1.08997 * 109.46820 * 210.00471 * 20 19 15 45 45 H 1.08996 * 109.46904 * 330.00105 * 20 19 15 46 46 H 0.97001 * 119.99480 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 8 1.0055 1.4455 2.1410 6 7 2.0180 3.3202 1.5231 7 6 2.7890 4.1604 0.5952 8 6 3.0091 5.5229 1.2856 9 6 2.8463 5.1784 2.7896 10 6 1.7358 4.0990 2.7427 11 6 1.9640 -0.7202 -1.0694 12 7 2.8025 -0.1623 -1.9359 13 6 3.2802 -0.8442 -2.9618 14 7 2.9618 -2.0997 -3.1894 15 6 2.1271 -2.7470 -2.3778 16 6 1.5919 -2.0637 -1.2684 17 6 0.7521 -2.9724 -0.5889 18 7 0.7779 -4.1105 -1.2218 19 7 1.6144 -4.0094 -2.3407 20 6 1.8971 -5.0794 -3.3007 21 6 3.0929 -5.8692 -2.8347 22 1 3.5922 -5.6013 -1.9153 23 6 3.5497 -6.9340 -3.5823 24 7 2.9414 -7.2605 -4.7017 25 14 5.0316 -7.9135 -3.0044 26 1 5.5303 -7.3481 -1.7250 27 1 4.6390 -9.3310 -2.7999 28 1 6.1039 -7.8397 -4.0291 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8523 31 1 -0.3633 0.4512 -0.9234 32 1 3.0798 1.3444 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 3.7496 3.6916 0.3815 35 1 2.2293 4.3016 -0.3294 36 1 2.2552 6.2447 0.9715 37 1 4.0121 5.8981 1.0822 38 1 2.5200 6.0500 3.3569 39 1 3.7705 4.7710 3.1993 40 1 0.7539 4.5674 2.6750 41 1 1.7899 3.4583 3.6229 42 1 3.9590 -0.3504 -3.6414 43 1 0.1874 -2.7611 0.3072 44 1 1.0324 -5.7389 -3.3747 45 1 2.1071 -4.6447 -4.2779 46 1 3.2626 -8.0098 -5.2273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065533111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:41 Heat of formation + Delta-G solvation = 107.582422 kcal Electronic energy + Delta-G solvation = -29615.678946 eV Core-core repulsion = 25542.987087 eV Total energy + Delta-G solvation = -4072.691859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.66927 -40.43733 -38.89094 -37.89846 -36.75154 -33.80560 -32.50959 -32.21366 -31.47485 -30.17309 -29.53257 -28.38029 -27.11203 -26.07089 -23.94527 -23.61695 -23.01716 -22.13285 -21.56975 -20.06224 -19.54740 -17.82721 -17.59308 -17.08901 -16.96728 -16.71631 -16.08917 -15.87302 -15.48963 -14.99309 -14.62529 -14.51806 -14.29352 -14.07871 -13.86525 -13.82717 -13.67465 -13.32861 -13.06972 -12.92559 -12.74175 -12.19960 -11.97900 -11.92778 -11.81765 -11.69375 -11.64393 -11.24721 -11.16884 -11.10541 -10.92414 -10.81455 -10.30479 -10.21264 -10.02480 -9.78013 -9.29438 -8.99291 -8.86418 -8.62009 -8.36445 -7.89158 -6.23902 -4.30350 1.00902 1.71914 2.37287 2.48227 2.90037 2.98650 3.22903 3.29963 3.36924 3.41456 3.97692 4.09389 4.18692 4.31625 4.36271 4.40753 4.49190 4.64141 4.78409 4.87173 4.89671 4.96093 5.05733 5.11889 5.14448 5.25038 5.25219 5.28040 5.36534 5.38635 5.40625 5.49375 5.51400 5.61507 5.66139 5.83543 5.93180 6.22559 6.33442 6.59487 6.98732 7.00372 7.06529 7.14851 7.25769 7.61870 7.77813 7.88231 7.90686 8.13066 8.59278 8.73824 9.34956 10.84376 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.002243 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.268134 B =12482.871282 C =12821.413589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.455 5.455 3 C 0.052 3.948 4 C 0.529 3.471 5 O -0.522 6.522 6 N -0.623 5.623 7 C 0.096 3.904 8 C -0.132 4.132 9 C -0.135 4.135 10 C 0.106 3.894 11 C 0.432 3.568 12 N -0.604 5.604 13 C 0.350 3.650 14 N -0.532 5.532 15 C 0.352 3.648 16 C -0.294 4.294 17 C 0.072 3.928 18 N -0.234 5.234 19 N -0.331 5.331 20 C 0.263 3.737 21 C -0.534 4.534 22 H 0.062 0.938 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.908 3.092 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.198 0.802 43 H 0.190 0.810 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 27.708 10.202 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.171 5.171 3 C -0.078 4.078 4 C 0.318 3.682 5 O -0.397 6.397 6 N -0.359 5.359 7 C -0.027 4.027 8 C -0.170 4.170 9 C -0.173 4.173 10 C -0.017 4.017 11 C 0.183 3.817 12 N -0.330 5.330 13 C 0.056 3.944 14 N -0.254 5.254 15 C 0.103 3.897 16 C -0.310 4.310 17 C -0.123 4.123 18 N -0.050 5.050 19 N -0.117 5.117 20 C 0.146 3.854 21 C -0.572 4.572 22 H 0.080 0.920 23 C -0.137 4.137 24 N -0.529 5.529 25 Si 0.735 3.265 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.214 0.786 43 H 0.207 0.793 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.282 25.848 10.129 27.855 hybrid contribution 0.604 0.120 0.105 0.625 sum -1.678 25.968 10.234 27.962 Atomic orbital electron populations 1.22798 0.82343 1.04950 1.02357 1.58178 1.10277 1.12947 1.35719 1.21851 1.03835 0.87707 0.94379 1.20284 0.79101 0.79720 0.89115 1.90700 1.39398 1.63011 1.46629 1.48490 1.56013 1.12270 1.19164 1.22111 0.96385 0.91081 0.93098 1.22639 1.03082 0.96068 0.95196 1.22806 0.99192 0.98660 0.96635 1.22220 0.98232 0.92952 0.88260 1.19385 0.88685 0.88424 0.85252 1.68293 1.18650 1.39083 1.06938 1.24491 0.93269 0.85492 0.91161 1.67522 1.16266 1.09915 1.31703 1.19020 0.91833 0.87913 0.90920 1.19614 1.11409 0.96398 1.03597 1.23633 0.99081 0.89445 1.00167 1.76999 1.10304 1.21063 0.96630 1.49543 1.33350 1.07941 1.20890 1.19838 0.98072 0.82523 0.84974 1.21283 1.12932 1.14092 1.08915 0.91952 1.24906 0.97454 0.96746 0.94607 1.69928 1.40534 1.28520 1.13888 0.86278 0.81827 0.79556 0.78873 1.19663 1.20599 1.20576 0.89530 0.88206 0.94395 0.86167 0.90063 0.90827 0.91038 0.90407 0.89784 0.89729 0.90442 0.91456 0.90261 0.78609 0.79290 0.92643 0.92201 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.92 60.06 0.54 0.78 16 2 N -0.45 -6.23 4.52 -182.03 -0.82 -7.05 16 3 C 0.05 0.57 3.92 -4.98 -0.02 0.55 16 4 C 0.53 5.99 7.54 -10.99 -0.08 5.90 16 5 O -0.52 -7.61 14.59 5.55 0.08 -7.53 16 6 N -0.62 -5.22 3.33 -170.51 -0.57 -5.79 16 7 C 0.10 0.52 6.48 -3.07 -0.02 0.50 16 8 C -0.13 -0.47 6.95 -24.90 -0.17 -0.64 16 9 C -0.13 -0.57 7.08 -24.57 -0.17 -0.74 16 10 C 0.11 0.73 6.91 -2.52 -0.02 0.71 16 11 C 0.43 6.96 6.42 -154.85 -0.99 5.96 16 12 N -0.60 -9.23 8.76 -13.62 -0.12 -9.35 16 13 C 0.35 5.63 12.24 -92.11 -1.13 4.50 16 14 N -0.53 -10.99 10.47 -13.97 -0.15 -11.13 16 15 C 0.35 7.75 8.04 -156.24 -1.26 6.49 16 16 C -0.29 -5.51 5.76 -106.82 -0.61 -6.13 16 17 C 0.07 1.29 10.79 -17.11 -0.18 1.10 16 18 N -0.23 -5.10 12.45 30.80 0.38 -4.72 16 19 N -0.33 -7.93 3.63 -61.64 -0.22 -8.16 16 20 C 0.26 6.98 6.19 -5.19 -0.03 6.95 16 21 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 22 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 23 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 24 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 25 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.09 1.00 5.15 -51.93 -0.27 0.74 16 30 H 0.10 1.17 5.83 -51.93 -0.30 0.87 16 31 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.12 1.32 7.55 -51.93 -0.39 0.93 16 33 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 42 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.19 2.60 6.78 -52.49 -0.36 2.25 16 44 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -34.61 381.03 -10.89 -45.50 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.35 Total: -1.45 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: -4.58 Total: 12.13 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -0.76 Total: -71.19 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.08 Total: -7.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.61 -10.89 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065533111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.085 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds