Wall clock time and date at job start Tue Mar 31 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29024 * 124.91633 * 2 1 4 4 C 1.31781 * 117.12354 * 179.97438 * 3 2 1 5 5 C 1.33640 * 114.50404 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.04048 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.47351 * 89.99596 * 6 5 4 8 8 C 1.46901 * 110.99793 * 293.95574 * 7 6 5 9 9 C 1.38108 * 110.99812 * 169.99883 * 7 6 5 10 10 N 1.32860 * 120.81388 * 0.02562 * 9 7 6 11 11 C 1.32121 * 121.19017 * 179.97438 * 10 9 7 12 12 N 1.31513 * 122.64804 * 359.97438 * 11 10 9 13 13 C 1.33194 * 120.68278 * 0.02562 * 12 11 10 14 14 C 1.40821 * 120.80810 * 179.71863 * 9 7 6 15 15 C 1.41172 * 134.69906 * 0.68483 * 14 9 7 16 16 N 1.30241 * 108.46698 * 179.54523 * 15 14 9 17 17 N 1.36311 * 134.61761 * 179.97438 * 13 12 11 18 18 C 1.46499 * 125.87110 * 359.97438 * 17 13 12 19 19 C 1.50704 * 109.47323 * 89.99920 * 18 17 13 20 20 H 1.07997 * 119.99865 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00056 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99895 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47032 * 90.00264 * 23 21 19 25 25 H 1.48507 * 109.47114 * 210.00171 * 23 21 19 26 26 H 1.48500 * 109.47295 * 329.99915 * 23 21 19 27 27 S 1.70979 * 124.91465 * 180.30782 * 2 1 3 28 28 H 1.09004 * 109.46833 * 89.97951 * 1 2 3 29 29 H 1.08998 * 109.47577 * 209.97684 * 1 2 3 30 30 H 1.09003 * 109.47466 * 329.97981 * 1 2 3 31 31 H 1.07999 * 122.74847 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47055 * 329.99652 * 6 5 4 33 33 H 1.09001 * 109.47156 * 209.99421 * 6 5 4 34 34 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 35 35 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 36 36 H 1.09004 * 109.46970 * 179.97438 * 8 7 6 37 37 H 1.07996 * 118.67947 * 180.02562 * 11 10 9 38 38 H 1.08001 * 125.76304 * 359.31778 * 15 14 9 39 39 H 1.09003 * 109.47112 * 209.99566 * 18 17 13 40 40 H 1.08998 * 109.47512 * 330.00101 * 18 17 13 41 41 H 0.96998 * 120.00116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 3.9354 -0.4007 0.0004 6 6 5.3574 -0.8995 0.0015 7 7 5.8184 -1.0619 1.3869 8 6 5.9029 0.2363 2.0692 9 6 7.0296 -1.7241 1.4310 10 7 7.6272 -2.1248 0.3141 11 6 8.7862 -2.7583 0.3476 12 7 9.4144 -3.0292 1.4708 13 6 8.8962 -2.6684 2.6435 14 6 7.6644 -1.9854 2.6606 15 6 7.3514 -1.7310 4.0134 16 7 8.3097 -2.2080 4.7553 17 7 9.2865 -2.7978 3.9431 18 6 10.5163 -3.4426 4.4100 19 6 11.6208 -2.4204 4.4888 20 1 11.4261 -1.3931 4.2186 21 6 12.8797 -2.7966 4.9069 22 7 13.1167 -4.0475 5.2365 23 14 14.2486 -1.5294 5.0053 24 1 14.2555 -0.9121 6.3558 25 1 15.5546 -2.1912 4.7567 26 1 14.0239 -0.4775 3.9814 27 16 2.4856 -1.4020 -0.0075 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 4.2531 1.7000 0.0002 32 1 5.9953 -0.1798 -0.5116 33 1 5.4061 -1.8594 -0.5125 34 1 4.9190 0.7053 2.0809 35 1 6.6058 0.8797 1.5401 36 1 6.2461 0.0870 3.0930 37 1 9.2361 -3.0655 -0.5849 38 1 6.4684 -1.2231 4.3723 39 1 10.3486 -3.8731 5.3973 40 1 10.8002 -4.2312 3.7132 41 1 14.0024 -4.3122 5.5303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065533133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:53 Heat of formation + Delta-G solvation = 177.814589 kcal Electronic energy + Delta-G solvation = -26449.594374 eV Core-core repulsion = 22686.867787 eV Total energy + Delta-G solvation = -3762.726587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70363 -40.10315 -38.96504 -37.48388 -33.94538 -33.15789 -32.23065 -31.53580 -30.40756 -29.29377 -27.48160 -27.04346 -25.12908 -23.92808 -23.63017 -23.02297 -22.01160 -20.12099 -19.65237 -18.29016 -17.68236 -17.48794 -16.75207 -16.41256 -15.91301 -15.46229 -15.15418 -14.90612 -14.68101 -14.44963 -14.31851 -13.93349 -13.84919 -13.47618 -13.27170 -13.03991 -12.88415 -12.54400 -12.41848 -12.26888 -12.06800 -11.68498 -11.46010 -11.20791 -11.11216 -10.92679 -10.83911 -10.34104 -10.26153 -9.88567 -9.88321 -9.60031 -9.39973 -9.07114 -8.85224 -8.64914 -8.43138 -7.95023 -6.26981 -4.33941 0.37117 0.95574 1.05175 1.50010 1.67740 2.48768 2.84533 2.91643 3.20933 3.26752 3.31949 3.37551 3.85447 4.13276 4.27798 4.31859 4.54437 4.59807 4.70292 4.77975 4.90407 4.94306 5.03634 5.06958 5.08578 5.15695 5.20583 5.36678 5.38402 5.46188 5.50874 5.58804 5.68169 5.88411 6.17460 6.27863 6.54037 6.94800 6.96120 7.02192 7.20770 7.44115 7.57444 7.73879 7.84537 8.07730 8.55243 8.69373 9.31343 10.81272 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.002262 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.789746 B =12377.552671 C =12493.736037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.036 3.964 3 N -0.476 5.476 4 C 0.042 3.958 5 C -0.217 4.217 6 C 0.141 3.859 7 N -0.470 5.470 8 C 0.021 3.979 9 C 0.431 3.569 10 N -0.600 5.600 11 C 0.350 3.650 12 N -0.531 5.531 13 C 0.352 3.648 14 C -0.295 4.295 15 C 0.070 3.930 16 N -0.233 5.233 17 N -0.330 5.330 18 C 0.263 3.737 19 C -0.535 4.535 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.273 1.273 27 S 0.147 5.853 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.198 0.802 38 H 0.189 0.811 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.760 6.789 -11.897 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.241 4.241 3 N -0.191 5.191 4 C -0.110 4.110 5 C -0.339 4.339 6 C 0.013 3.987 7 N -0.186 5.186 8 C -0.125 4.125 9 C 0.182 3.818 10 N -0.325 5.325 11 C 0.056 3.944 12 N -0.253 5.253 13 C 0.103 3.897 14 C -0.311 4.311 15 C -0.126 4.126 16 N -0.049 5.049 17 N -0.117 5.117 18 C 0.146 3.854 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.198 1.198 27 S 0.402 5.598 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.190 0.810 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.214 0.786 38 H 0.206 0.794 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.376 5.265 -11.007 25.487 hybrid contribution 1.367 2.019 -0.290 2.455 sum -21.009 7.283 -11.297 24.941 Atomic orbital electron populations 1.20436 0.85287 1.04241 1.03824 1.27073 1.01868 0.91485 1.03666 1.66297 1.04772 1.31729 1.16267 1.21723 0.91186 0.95729 1.02368 1.25852 0.99778 0.96171 1.12108 1.20333 0.87292 1.03277 0.87818 1.58596 1.21953 1.20960 1.17132 1.22710 1.02873 0.86760 1.00114 1.19348 0.85686 0.89191 0.87613 1.68312 1.13654 1.21730 1.28804 1.24517 0.86080 0.88547 0.95214 1.67532 1.36106 1.25404 0.96238 1.19029 0.89808 0.92908 0.87945 1.19645 1.01054 1.15487 0.94920 1.23576 0.98742 1.00922 0.89312 1.76987 0.97931 1.10831 1.19163 1.49541 1.18609 1.44030 0.99479 1.19843 0.75320 0.93047 0.97190 1.21220 0.94098 0.95324 1.46727 0.92054 1.24902 0.98455 0.95821 0.94500 1.69913 1.22935 1.16059 1.43846 0.86330 0.80626 0.80948 0.78607 1.20292 1.20759 1.19782 1.84102 0.97033 1.11608 1.67043 0.89659 0.90081 0.89315 0.80973 0.90563 0.87646 0.89763 0.93618 0.89407 0.78566 0.79441 0.92633 0.92190 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.46 36.00 0.38 -0.03 16 2 C 0.04 0.31 7.39 -13.46 -0.10 0.21 16 3 N -0.48 -4.93 10.54 -11.86 -0.13 -5.05 16 4 C 0.04 0.40 9.85 -19.18 -0.19 0.21 16 5 C -0.22 -2.05 5.50 -35.92 -0.20 -2.24 16 6 C 0.14 1.44 4.78 -4.97 -0.02 1.42 16 7 N -0.47 -5.58 4.77 -182.03 -0.87 -6.45 16 8 C 0.02 0.21 9.02 60.07 0.54 0.75 16 9 C 0.43 6.53 6.43 -154.85 -0.99 5.53 16 10 N -0.60 -9.02 8.76 -13.62 -0.12 -9.14 16 11 C 0.35 5.59 12.24 -92.11 -1.13 4.46 16 12 N -0.53 -10.80 10.47 -13.97 -0.15 -10.95 16 13 C 0.35 7.55 8.04 -156.24 -1.26 6.29 16 14 C -0.29 -5.25 5.73 -106.81 -0.61 -5.86 16 15 C 0.07 1.17 10.73 -17.11 -0.18 0.99 16 16 N -0.23 -4.90 12.45 30.80 0.38 -4.51 16 17 N -0.33 -7.73 3.63 -61.64 -0.22 -7.95 16 18 C 0.26 6.88 6.19 -5.19 -0.03 6.85 16 19 C -0.54 -15.01 9.39 -34.44 -0.32 -15.34 16 20 H 0.06 1.77 7.81 -52.49 -0.41 1.35 16 21 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 23 Si 0.91 21.43 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 S 0.15 1.26 23.18 -107.50 -2.49 -1.23 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.11 1.15 7.54 -51.93 -0.39 0.76 16 34 H 0.08 0.72 6.32 -51.93 -0.33 0.39 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.89 5.04 -51.93 -0.26 0.63 16 37 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.19 2.31 6.86 -52.49 -0.36 1.95 16 39 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -32.73 364.13 -11.30 -44.03 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.69 Total: -0.96 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -4.22 Total: 5.00 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -0.36 Total: -68.74 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.49 Total: -1.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.73 -11.30 -44.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065533133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.845 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds