Wall clock time and date at job start Tue Mar 31 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 120.00127 * 2 1 4 4 N 1.34781 * 119.99691 * 179.97438 * 2 1 3 5 5 C 1.47620 * 118.74368 * 174.80345 * 4 2 1 6 6 C 1.53794 * 111.29826 * 138.34275 * 5 4 2 7 7 C 1.51276 * 109.60295 * 319.96711 * 6 5 4 8 8 N 1.46165 * 109.11097 * 92.45031 * 7 6 5 9 9 C 1.38111 * 111.02082 * 144.73641 * 8 7 6 10 10 N 1.32858 * 120.81583 * 254.97063 * 9 8 7 11 11 C 1.32118 * 121.19597 * 179.97438 * 10 9 8 12 12 N 1.31503 * 122.65058 * 359.97438 * 11 10 9 13 13 C 1.33196 * 120.67760 * 0.02562 * 12 11 10 14 14 C 1.40817 * 120.81043 * 74.68538 * 9 8 7 15 15 C 1.41172 * 134.69888 * 0.68529 * 14 9 8 16 16 N 1.30253 * 108.46749 * 179.54845 * 15 14 9 17 17 N 1.36327 * 134.61466 * 179.97438 * 13 12 11 18 18 C 1.46488 * 125.87190 * 359.97438 * 17 13 12 19 19 C 1.50700 * 109.47426 * 89.99880 * 18 17 13 20 20 H 1.08001 * 119.99743 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00385 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00088 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99957 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47506 * 60.00079 * 23 21 19 25 25 H 1.48504 * 109.47159 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47405 * 299.99984 * 23 21 19 27 27 C 1.41442 * 116.32031 * 272.93227 * 8 7 6 28 28 C 1.44877 * 118.74767 * 354.82476 * 4 2 1 29 29 H 1.08999 * 109.46818 * 264.58458 * 1 2 3 30 30 H 1.09004 * 109.46806 * 24.58300 * 1 2 3 31 31 H 1.09000 * 109.47014 * 144.58460 * 1 2 3 32 32 H 1.08996 * 109.11388 * 17.87243 * 5 4 2 33 33 H 1.08998 * 109.11130 * 258.80492 * 5 4 2 34 34 H 1.09002 * 109.45142 * 80.00261 * 6 5 4 35 35 H 1.09008 * 109.44266 * 199.94237 * 6 5 4 36 36 H 1.09000 * 109.53979 * 212.28349 * 7 6 5 37 37 H 1.08993 * 109.53761 * 332.51983 * 7 6 5 38 38 H 1.08008 * 118.67943 * 180.02562 * 11 10 9 39 39 H 1.07991 * 125.76733 * 359.31716 * 15 14 9 40 40 H 1.09005 * 109.47376 * 209.99975 * 18 17 13 41 41 H 1.08997 * 109.47608 * 330.00026 * 18 17 13 42 42 H 0.97000 * 120.00616 * 180.02562 * 22 21 19 43 43 H 1.09001 * 109.38446 * 303.32383 * 27 8 7 44 44 H 1.08995 * 109.30458 * 183.58493 * 27 8 7 45 45 H 1.08991 * 109.43830 * 29.77081 * 28 4 2 46 46 H 1.09007 * 109.43413 * 149.68115 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6521 -1.1377 -0.1167 6 6 4.3088 -2.1522 0.8345 7 6 3.5793 -2.1512 2.1597 8 7 2.5384 -3.1770 2.1338 9 6 2.3924 -3.7662 3.3744 10 7 2.8600 -4.9879 3.6069 11 6 2.7249 -5.5584 4.7909 12 7 2.1288 -4.9639 5.8011 13 6 1.6266 -3.7375 5.6676 14 6 1.7497 -3.0844 4.4255 15 6 1.1362 -1.8201 4.5606 16 7 0.6863 -1.7077 5.7777 17 7 0.9708 -2.8760 6.4960 18 6 0.6227 -3.1291 7.8962 19 6 1.7465 -2.6629 8.7855 20 1 2.6314 -2.2217 8.3510 21 6 1.6446 -2.7985 10.1538 22 7 0.5669 -3.3353 10.6829 23 14 3.0373 -2.2200 11.2560 24 1 3.2559 -0.7649 11.0551 25 1 2.6840 -2.4755 12.6755 26 1 4.2792 -2.9589 10.9137 27 6 1.2851 -2.7856 1.6080 28 6 1.4337 -2.4031 0.1157 29 1 -0.3633 -0.0970 1.0231 30 1 -0.3633 0.9346 -0.4275 31 1 -0.3633 -0.8375 -0.5955 32 1 4.0095 -0.1372 0.1266 33 1 3.9332 -1.3765 -1.1424 34 1 4.2592 -3.1479 0.3937 35 1 5.3516 -1.8776 0.9942 36 1 4.2831 -2.3677 2.9634 37 1 3.1249 -1.1744 2.3250 38 1 3.1208 -6.5529 4.9352 39 1 1.0570 -1.0711 3.7867 40 1 -0.2887 -2.5867 8.1479 41 1 0.4622 -4.1971 8.0435 42 1 0.4950 -3.4304 11.6455 43 1 0.9109 -1.9271 2.1659 44 1 0.5811 -3.6124 1.7013 45 1 0.4456 -2.2720 -0.3253 46 1 1.9631 -3.1975 -0.4106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065534719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:24 Heat of formation + Delta-G solvation = 111.871929 kcal Electronic energy + Delta-G solvation = -30783.982253 eV Core-core repulsion = 26711.476402 eV Total energy + Delta-G solvation = -4072.505852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.93341 -40.61211 -39.00922 -38.11118 -35.70973 -33.91305 -33.58001 -32.62179 -31.53938 -30.16967 -30.01234 -28.09791 -27.34848 -26.29904 -24.44203 -23.65296 -22.84570 -22.36767 -21.21442 -20.21310 -19.27608 -17.89091 -17.81722 -17.15459 -16.81789 -16.60241 -16.36198 -15.90804 -15.84787 -15.01879 -14.91706 -14.55117 -14.35792 -14.20206 -14.04534 -13.83142 -13.51450 -13.11913 -12.95327 -12.75106 -12.61408 -12.39610 -12.28572 -11.98499 -11.91283 -11.81391 -11.26904 -11.20504 -11.18631 -11.12592 -10.87557 -10.68995 -10.39818 -10.35656 -10.04334 -9.85451 -9.23242 -9.02049 -8.81930 -8.68402 -8.46302 -8.12583 -6.30704 -4.38240 0.78086 1.61069 2.34568 2.70477 2.72644 2.80344 3.17039 3.20970 3.24432 3.28772 4.04120 4.23709 4.24938 4.43905 4.49490 4.50139 4.59064 4.63856 4.69131 4.82075 4.85680 4.95979 5.01583 5.04495 5.11961 5.16331 5.21924 5.25727 5.38235 5.41347 5.43134 5.55353 5.59364 5.69345 5.74613 5.94707 6.18322 6.22405 6.40350 6.86744 6.88394 6.90762 6.96212 7.07769 7.19728 7.54059 7.69197 7.79581 7.88863 7.97858 8.49045 8.64307 9.27533 10.77529 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.002967 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.977653 B = 9434.049180 C = 9980.000835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.507 3.493 3 O -0.546 6.546 4 N -0.610 5.610 5 C 0.110 3.890 6 C -0.129 4.129 7 C 0.086 3.914 8 N -0.513 5.513 9 C 0.437 3.563 10 N -0.542 5.542 11 C 0.336 3.664 12 N -0.518 5.518 13 C 0.346 3.654 14 C -0.312 4.312 15 C 0.058 3.942 16 N -0.222 5.222 17 N -0.330 5.330 18 C 0.263 3.737 19 C -0.538 4.538 20 H 0.061 0.939 21 C 0.069 3.931 22 N -0.890 5.890 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C 0.059 3.941 28 C 0.110 3.890 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.201 0.799 39 H 0.182 0.818 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.270 0.730 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -0.347 -23.494 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.296 3.704 3 O -0.424 6.424 4 N -0.344 5.344 5 C -0.012 4.012 6 C -0.168 4.168 7 C -0.040 4.040 8 N -0.235 5.235 9 C 0.187 3.813 10 N -0.260 5.260 11 C 0.042 3.958 12 N -0.237 5.237 13 C 0.096 3.904 14 C -0.330 4.330 15 C -0.137 4.137 16 N -0.038 5.038 17 N -0.117 5.117 18 C 0.146 3.854 19 C -0.577 4.577 20 H 0.079 0.921 21 C -0.135 4.135 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.071 4.071 28 C -0.014 4.014 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.218 0.782 39 H 0.199 0.801 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.429 -0.306 -22.300 22.347 hybrid contribution 0.487 0.918 0.724 1.266 sum 1.916 0.612 -21.576 21.669 Atomic orbital electron populations 1.22032 0.91831 1.05006 1.04922 1.20949 0.90787 0.83323 0.75339 1.90716 1.70723 1.31268 1.49674 1.47919 1.07232 1.06335 1.72897 1.21886 0.78581 1.01410 0.99286 1.21884 0.99250 1.00665 0.94999 1.21514 0.92260 0.91926 0.98320 1.54755 1.10927 1.35814 1.21982 1.19063 0.87186 0.88412 0.86601 1.68087 1.23635 1.10066 1.24249 1.24743 0.90392 0.98825 0.81812 1.67515 1.13791 1.08318 1.34119 1.19130 0.92933 0.89837 0.88464 1.20866 1.14351 0.99491 0.98251 1.23528 0.99258 0.95615 0.95304 1.76979 1.18042 1.04474 1.04328 1.49617 1.42540 1.07506 1.12011 1.19861 0.97954 0.98809 0.68764 1.21176 1.02982 1.42409 0.91130 0.92106 1.24891 0.96434 0.94581 0.97625 1.69896 1.27167 1.43007 1.12646 0.86386 0.81750 0.79359 0.79033 1.19949 1.20769 1.19908 1.21914 0.89135 1.00638 0.95397 1.21813 0.97445 0.86654 0.95503 0.88682 0.88992 0.89650 0.89223 0.91663 0.89529 0.89842 0.90654 0.92811 0.78218 0.80088 0.92613 0.92136 0.92068 0.93975 0.89233 0.88845 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.46 36.01 0.34 -0.77 16 2 C 0.51 4.95 7.73 -10.98 -0.08 4.87 16 3 O -0.55 -7.71 16.39 5.56 0.09 -7.62 16 4 N -0.61 -4.92 2.18 -172.45 -0.38 -5.30 16 5 C 0.11 0.88 6.17 -3.02 -0.02 0.86 16 6 C -0.13 -1.02 5.78 -27.19 -0.16 -1.18 16 7 C 0.09 0.91 5.12 -5.09 -0.03 0.88 16 8 N -0.51 -5.70 3.87 -177.44 -0.69 -6.39 16 9 C 0.44 6.43 5.26 -154.85 -0.81 5.62 16 10 N -0.54 -8.32 10.45 -13.62 -0.14 -8.46 16 11 C 0.34 5.31 12.24 -92.12 -1.13 4.18 16 12 N -0.52 -10.34 10.47 -13.96 -0.15 -10.48 16 13 C 0.35 7.25 8.04 -156.22 -1.26 6.00 16 14 C -0.31 -5.37 5.58 -106.81 -0.60 -5.97 16 15 C 0.06 0.96 10.98 -17.11 -0.19 0.77 16 16 N -0.22 -4.60 12.45 30.80 0.38 -4.22 16 17 N -0.33 -7.59 3.63 -61.65 -0.22 -7.81 16 18 C 0.26 6.80 6.19 -5.20 -0.03 6.77 16 19 C -0.54 -15.06 9.39 -34.44 -0.32 -15.38 16 20 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 21 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 22 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 23 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.06 0.51 4.89 -5.74 -0.03 0.49 16 28 C 0.11 0.68 5.40 -3.98 -0.02 0.66 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.32 6.13 -51.93 -0.32 0.00 16 32 H 0.09 0.87 6.95 -51.93 -0.36 0.51 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.69 7.98 -51.93 -0.41 0.28 16 35 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 37 H 0.05 0.61 7.32 -51.93 -0.38 0.23 16 38 H 0.20 2.33 8.06 -52.48 -0.42 1.91 16 39 H 0.18 2.30 6.63 -52.49 -0.35 1.95 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.06 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.04 0.39 5.46 -51.93 -0.28 0.11 16 44 H 0.09 0.79 7.96 -51.93 -0.41 0.38 16 45 H 0.09 0.36 5.62 -51.93 -0.29 0.07 16 46 H 0.09 0.55 8.11 -51.93 -0.42 0.12 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -33.95 374.16 -10.31 -44.27 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.13 Total: -1.07 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -4.43 Total: 9.60 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -0.46 Total: -67.18 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.95 -10.31 -44.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.139 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds