Wall clock time and date at job start Tue Mar 31 2020 07:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46898 * 110.99914 * 2 1 4 4 C 1.52995 * 109.47400 * 66.04377 * 3 2 1 5 5 C 1.52997 * 109.47372 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47303 * 180.02562 * 5 4 3 7 7 C 1.35896 * 116.99932 * 179.97438 * 6 5 4 8 8 C 1.38740 * 120.05243 * 179.97438 * 7 6 5 9 9 C 1.38145 * 119.94105 * 179.97438 * 8 7 6 10 10 C 1.38270 * 120.05801 * 0.02562 * 9 8 7 11 11 C 1.38261 * 120.10972 * 359.95664 * 10 9 8 12 12 C 1.38152 * 120.05678 * 0.03935 * 11 10 9 13 13 C 1.46901 * 111.00137 * 236.04336 * 2 1 3 14 14 C 1.52993 * 109.47337 * 293.95733 * 13 2 1 15 15 C 1.50696 * 109.47559 * 179.97438 * 14 13 2 16 16 O 1.21300 * 119.99668 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00284 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99953 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99899 * 18.11619 * 18 17 15 20 20 C 1.38950 * 119.99750 * 198.11705 * 18 17 15 21 21 N 1.31412 * 120.00073 * 18.72911 * 20 18 17 22 22 Si 1.86802 * 119.99737 * 198.72804 * 20 18 17 23 23 H 1.48501 * 109.47063 * 85.59134 * 22 20 18 24 24 H 1.48497 * 109.46924 * 205.58877 * 22 20 18 25 25 H 1.48503 * 109.47163 * 325.59040 * 22 20 18 26 26 C 1.46493 * 120.00264 * 359.97438 * 17 15 14 27 27 C 1.47196 * 109.47112 * 84.20708 * 26 17 15 28 28 N 5.83223 * 61.30948 * 198.38535 * 2 1 3 29 29 H 1.08995 * 109.46965 * 60.00541 * 1 2 3 30 30 H 1.09007 * 109.46760 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47107 * 299.99893 * 1 2 3 32 32 H 1.09005 * 109.46879 * 306.04376 * 3 2 1 33 33 H 1.08994 * 109.47143 * 186.04958 * 3 2 1 34 34 H 1.09005 * 109.47105 * 60.00137 * 4 3 2 35 35 H 1.09008 * 109.47538 * 300.00277 * 4 3 2 36 36 H 1.08999 * 109.47413 * 60.00168 * 5 4 3 37 37 H 1.09001 * 109.46793 * 299.99805 * 5 4 3 38 38 H 1.08001 * 120.02644 * 359.70712 * 8 7 6 39 39 H 1.08002 * 119.97000 * 180.02562 * 9 8 7 40 40 H 1.07997 * 119.94518 * 179.97438 * 10 9 8 41 41 H 1.08007 * 119.97357 * 180.02562 * 11 10 9 42 42 H 1.08000 * 120.02662 * 179.97438 * 12 11 10 43 43 H 1.09007 * 109.46619 * 53.95237 * 13 2 1 44 44 H 1.08995 * 109.47052 * 173.95076 * 13 2 1 45 45 H 1.09002 * 109.46982 * 300.00084 * 14 13 2 46 46 H 1.09004 * 109.47819 * 59.99498 * 14 13 2 47 47 H 0.96997 * 119.99496 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.47572 * 204.20799 * 26 17 15 49 49 H 1.09004 * 109.46871 * 324.20817 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1792 3.4860 1.3179 6 8 1.8397 4.1266 2.5494 7 6 2.2551 5.4103 2.7121 8 6 1.9598 6.0930 3.8832 9 6 2.3837 7.3976 4.0464 10 6 3.1011 8.0233 3.0436 11 6 3.3970 7.3450 1.8757 12 6 2.9755 6.0401 1.7077 13 6 1.9956 -0.7660 -1.1375 14 6 1.6315 -2.2426 -0.9703 15 6 2.1711 -3.0284 -2.1376 16 8 2.7859 -2.4628 -3.0170 17 7 1.9705 -4.3594 -2.2043 18 6 2.4618 -5.0743 -3.2660 19 1 3.2402 -4.6544 -3.8859 20 6 1.9583 -6.3391 -3.5445 21 7 0.7954 -6.7059 -3.0545 22 14 2.9344 -7.5180 -4.6154 23 1 3.9078 -8.2601 -3.7746 24 1 2.0077 -8.4792 -5.2653 25 1 3.6637 -6.7517 -5.6576 26 6 1.2284 -5.0425 -1.1419 27 6 -0.2157 -4.9372 -1.4063 28 7 -1.3309 -4.8550 -1.6137 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5611 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1083 34 1 2.0658 1.5016 2.1492 35 1 0.5471 2.0845 1.4265 36 1 1.7445 4.0417 0.4870 37 1 3.2635 3.4594 1.2095 38 1 1.3954 5.6063 4.6648 39 1 2.1544 7.9294 4.9581 40 1 3.4312 9.0434 3.1729 41 1 3.9579 7.8357 1.0940 42 1 3.2065 5.5108 0.7950 43 1 1.5611 -0.3873 -2.0628 44 1 3.0798 -0.6611 -1.1756 45 1 2.0658 -2.6213 -0.0451 46 1 0.5473 -2.3476 -0.9323 47 1 0.4441 -7.5889 -3.2487 48 1 1.5172 -6.0933 -1.1148 49 1 1.4570 -4.5781 -0.1826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065605652.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:52 Heat of formation + Delta-G solvation = -6.667794 kcal Electronic energy + Delta-G solvation = -28522.896442 eV Core-core repulsion = 24451.072003 eV Total energy + Delta-G solvation = -4071.824439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.41876 -39.07861 -38.07289 -37.41225 -35.77970 -34.35728 -33.25807 -31.90746 -31.34858 -30.44397 -29.67359 -27.45335 -27.10676 -25.76396 -24.42954 -23.05198 -22.41119 -21.45519 -20.79094 -18.96533 -18.53329 -17.90694 -16.86105 -16.62533 -16.42866 -16.29319 -16.07351 -15.45980 -15.19520 -14.83778 -14.58824 -14.42642 -14.15859 -13.96397 -13.78841 -13.66328 -13.45393 -12.98285 -12.86640 -12.61177 -12.45775 -12.12623 -12.01743 -11.90463 -11.80339 -11.64284 -11.60929 -11.38228 -11.28274 -11.22119 -11.15328 -11.06086 -10.73576 -10.62508 -10.48751 -10.41485 -10.28491 -9.37001 -9.27851 -8.61660 -8.54442 -8.32522 -8.05942 -6.50784 -4.02425 0.97431 1.09936 2.79423 3.09702 3.21053 3.24609 3.44002 3.54208 3.76323 3.91807 3.97725 4.13072 4.44665 4.52831 4.58446 4.76091 4.76828 4.82533 4.88094 4.93149 4.99873 5.02768 5.12405 5.18119 5.21149 5.24387 5.33165 5.39266 5.46461 5.58439 5.60052 5.64092 5.69982 5.83207 5.91356 5.93006 5.98188 6.04721 6.06181 6.14275 6.17287 6.29977 6.33315 6.42518 6.54539 7.04728 7.07969 7.12323 7.45526 7.89238 8.26952 8.73565 8.98997 9.18617 9.72506 10.55075 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.001530 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.801873 B =18298.022324 C =19018.298642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.542 5.542 3 C 0.060 3.940 4 C -0.115 4.115 5 C 0.061 3.939 6 O -0.314 6.314 7 C 0.133 3.867 8 C -0.155 4.155 9 C -0.082 4.082 10 C -0.163 4.163 11 C -0.081 4.081 12 C -0.210 4.210 13 C 0.076 3.924 14 C -0.132 4.132 15 C 0.457 3.543 16 O -0.577 6.577 17 N -0.444 5.444 18 C -0.312 4.312 19 H 0.108 0.892 20 C 0.031 3.969 21 N -0.881 5.881 22 Si 0.929 3.071 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.270 1.270 26 C 0.221 3.779 27 C 0.248 3.752 28 N -0.476 5.476 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.273 0.727 48 H 0.129 0.871 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 21.414 14.112 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.266 5.266 3 C -0.069 4.069 4 C -0.153 4.153 5 C -0.015 4.015 6 O -0.227 6.227 7 C 0.088 3.912 8 C -0.174 4.174 9 C -0.100 4.100 10 C -0.181 4.181 11 C -0.099 4.099 12 C -0.229 4.229 13 C -0.051 4.051 14 C -0.173 4.173 15 C 0.246 3.754 16 O -0.461 6.461 17 N -0.164 5.164 18 C -0.439 4.439 19 H 0.126 0.874 20 C -0.172 4.172 21 N -0.521 5.521 22 Si 0.756 3.244 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.195 1.195 26 C 0.094 3.906 27 C -0.070 4.070 28 N -0.156 5.156 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.147 0.853 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.501 21.259 13.880 25.512 hybrid contribution 0.432 -0.451 -1.518 1.641 sum 2.933 20.808 12.363 24.380 Atomic orbital electron populations 1.22519 0.87586 1.02690 1.00412 1.61937 1.07957 1.12508 1.44234 1.21927 1.00655 0.88830 0.95443 1.21526 1.02329 0.92155 0.99315 1.22809 1.00195 0.93841 0.84622 1.86065 1.73880 1.23489 1.39314 1.19063 0.93857 0.83955 0.94364 1.20489 1.04954 0.95069 0.96869 1.20983 0.96424 0.93721 0.98857 1.21072 1.01978 1.00507 0.94561 1.20981 0.97796 0.93713 0.97373 1.21324 1.04376 0.97152 1.00053 1.21780 1.00674 0.92238 0.90432 1.21574 1.01832 0.94978 0.98869 1.20119 0.84871 0.82091 0.88351 1.90539 1.44921 1.68740 1.41861 1.43629 1.47447 1.05180 1.20167 1.19740 1.18627 0.97595 1.07958 0.87437 1.25286 0.95139 0.98726 0.98098 1.69823 1.15112 1.21291 1.45841 0.85879 0.79142 0.79616 0.79762 1.20071 1.21104 1.19450 1.18767 0.79755 1.02219 0.89903 1.29390 0.94985 0.91033 0.91630 1.80946 1.14055 1.11053 1.09579 0.95630 0.90811 0.91335 0.94624 0.90313 0.89727 0.90699 0.92048 0.91739 0.85191 0.85419 0.85982 0.85815 0.85381 0.94076 0.89966 0.89130 0.90372 0.91609 0.85313 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.13 60.07 0.55 0.74 16 2 N -0.54 -6.83 4.76 -242.92 -1.16 -7.98 16 3 C 0.06 0.61 4.96 -3.83 -0.02 0.59 16 4 C -0.12 -1.05 5.51 -26.74 -0.15 -1.19 16 5 C 0.06 0.51 4.74 37.16 0.18 0.69 16 6 O -0.31 -3.25 10.14 -19.41 -0.20 -3.45 16 7 C 0.13 1.30 6.69 -39.22 -0.26 1.04 16 8 C -0.16 -1.35 9.99 -39.43 -0.39 -1.74 16 9 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 10 C -0.16 -1.14 10.04 -39.56 -0.40 -1.54 16 11 C -0.08 -0.60 10.04 -39.60 -0.40 -1.00 16 12 C -0.21 -1.80 9.04 -39.43 -0.36 -2.16 16 13 C 0.08 1.17 4.25 -3.83 -0.02 1.15 16 14 C -0.13 -2.20 4.24 -27.89 -0.12 -2.32 16 15 C 0.46 10.07 7.56 -10.99 -0.08 9.99 16 16 O -0.58 -14.69 15.64 5.54 0.09 -14.61 16 17 N -0.44 -10.17 2.60 -117.94 -0.31 -10.48 16 18 C -0.31 -7.95 9.33 -14.93 -0.14 -8.09 16 19 H 0.11 2.89 7.38 -52.49 -0.39 2.51 16 20 C 0.03 0.75 4.93 -17.47 -0.09 0.66 16 21 N -0.88 -22.03 9.34 55.50 0.52 -21.51 16 22 Si 0.93 19.56 29.59 -169.99 -5.03 14.52 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C 0.22 4.31 4.91 -6.83 -0.03 4.27 16 27 C 0.25 5.39 12.96 -20.72 -0.27 5.12 16 28 N -0.48 -11.18 18.55 42.20 0.78 -10.39 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.94 6.30 -51.92 -0.33 0.61 16 31 H 0.07 0.70 6.47 -51.93 -0.34 0.36 16 32 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.70 6.55 -51.92 -0.34 0.35 16 36 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 37 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 42 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 43 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 44 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 45 H 0.09 1.32 7.41 -51.93 -0.38 0.93 16 46 H 0.08 1.31 5.84 -51.93 -0.30 1.00 16 47 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 48 H 0.13 2.59 6.40 -51.93 -0.33 2.25 16 49 H 0.08 1.25 6.68 -51.93 -0.35 0.90 16 LS Contribution 403.78 15.07 6.08 6.08 Total: -1.00 -31.12 403.78 -8.83 -39.95 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.22 Total: 2.63 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.39 Total: 5.23 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.16 Total: -50.37 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.11 Total: -18.05 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.12 -8.83 -39.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065605652.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.279 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds