Wall clock time and date at job start Tue Mar 31 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21324 * 119.99225 * 2 1 4 4 C 1.46611 * 120.00274 * 180.02562 * 2 1 3 5 5 C 1.38625 * 126.51500 * 273.26020 * 4 2 1 6 6 C 1.50694 * 125.82384 * 359.97438 * 5 4 2 7 7 N 1.34107 * 108.34343 * 180.26267 * 5 4 2 8 8 H 0.97009 * 125.34458 * 179.69909 * 7 5 4 9 9 C 1.37838 * 109.30574 * 359.56913 * 7 5 4 10 10 C 1.46852 * 125.79971 * 180.14980 * 9 7 5 11 11 O 1.21667 * 119.99954 * 173.01937 * 10 9 7 12 12 N 1.34779 * 120.00108 * 353.02728 * 10 9 7 13 13 C 1.46502 * 119.99586 * 354.85793 * 12 10 9 14 14 C 1.50701 * 109.47356 * 87.48696 * 13 12 10 15 15 H 1.08007 * 119.99620 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00307 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00006 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46991 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47106 * 119.99939 * 18 16 14 21 21 H 1.48499 * 109.47046 * 239.99591 * 18 16 14 22 22 C 1.46491 * 120.00344 * 174.86421 * 12 10 9 23 23 C 1.50706 * 109.47362 * 88.27115 * 22 12 10 24 24 C 1.34505 * 125.78680 * 89.72188 * 23 22 12 25 25 C 1.41389 * 106.84047 * 179.89366 * 24 23 22 26 26 C 1.34515 * 106.83742 * 0.36488 * 25 24 23 27 27 O 1.34299 * 108.42206 * 359.77741 * 26 25 24 28 28 C 1.36231 * 108.40008 * 0.43208 * 9 7 5 29 29 C 1.50700 * 126.51021 * 179.70779 * 28 9 7 30 30 H 1.08996 * 109.46646 * 245.08396 * 1 2 3 31 31 H 1.08988 * 109.47186 * 5.08660 * 1 2 3 32 32 H 1.09000 * 109.46499 * 125.09126 * 1 2 3 33 33 H 1.09007 * 109.46750 * 83.69938 * 6 5 4 34 34 H 1.09000 * 109.47778 * 323.69306 * 6 5 4 35 35 H 1.09004 * 109.46805 * 203.68773 * 6 5 4 36 36 H 1.09006 * 109.46804 * 207.48479 * 13 12 10 37 37 H 1.09003 * 109.47563 * 327.48087 * 13 12 10 38 38 H 0.96992 * 119.99781 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47735 * 208.27456 * 22 12 10 40 40 H 1.09001 * 109.46837 * 328.27450 * 22 12 10 41 41 H 1.08003 * 126.58257 * 0.02562 * 24 23 22 42 42 H 1.07998 * 126.58169 * 180.16404 * 25 24 23 43 43 H 1.07998 * 125.78584 * 179.75696 * 26 25 24 44 44 H 1.09000 * 109.47343 * 270.04192 * 29 28 9 45 45 H 1.08995 * 109.47398 * 30.04569 * 29 28 9 46 46 H 1.09002 * 109.47015 * 150.04217 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0508 0.0000 4 6 2.2402 -1.2696 -0.0006 5 6 2.5978 -2.0162 1.1114 6 6 2.2990 -1.6614 2.5452 7 7 3.2606 -3.1046 0.6937 8 1 3.6269 -3.7940 1.2696 9 6 3.3370 -3.0914 -0.6825 10 6 3.9825 -4.1131 -1.5168 11 8 3.8793 -4.0635 -2.7281 12 7 4.6892 -5.1057 -0.9407 13 6 4.9083 -5.1036 0.5078 14 6 3.7566 -5.7947 1.1912 15 1 2.9425 -6.1951 0.6050 16 6 3.7420 -5.9158 2.5645 17 7 4.7335 -5.4287 3.2782 18 14 2.3146 -6.7731 3.4114 19 1 1.3356 -7.2286 2.3920 20 1 2.8209 -7.9447 4.1705 21 1 1.6525 -5.8270 4.3450 22 6 5.2382 -6.1866 -1.7630 23 6 6.6050 -5.7938 -2.2618 24 6 7.7699 -6.0297 -1.6321 25 6 8.7930 -5.4979 -2.4503 26 6 8.1913 -4.9616 -3.5273 27 8 6.8661 -5.1437 -3.4077 28 6 2.7174 -1.9664 -1.1368 29 6 2.5690 -1.5434 -2.5756 30 1 -0.3632 -0.4329 0.9320 31 1 -0.3633 1.0235 -0.0911 32 1 -0.3632 -0.5908 -0.8409 33 1 1.2914 -1.9915 2.7987 34 1 2.3711 -0.5816 2.6751 35 1 3.0181 -2.1549 3.1990 36 1 5.8350 -5.6302 0.7358 37 1 4.9778 -4.0755 0.8633 38 1 4.7234 -5.5143 4.2442 39 1 5.3169 -7.0944 -1.1647 40 1 4.5796 -6.3673 -2.6125 41 1 7.8992 -6.5313 -0.6843 42 1 9.8536 -5.5156 -2.2479 43 1 8.6894 -4.4679 -4.3486 44 1 3.4220 -0.9289 -2.8635 45 1 2.5269 -2.4275 -3.2117 46 1 1.6507 -0.9679 -2.6922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065613898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:30 Heat of formation + Delta-G solvation = -6.464594 kcal Electronic energy + Delta-G solvation = -31073.585634 eV Core-core repulsion = 26931.362823 eV Total energy + Delta-G solvation = -4142.222811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21569 -41.20485 -38.91028 -38.15364 -35.67354 -33.30130 -32.61343 -32.35642 -31.68942 -30.40090 -29.49263 -27.94906 -27.26476 -26.51056 -24.84893 -23.31389 -22.27427 -21.38895 -20.56920 -19.84154 -18.69555 -18.24035 -17.31383 -16.97450 -16.48946 -16.00393 -15.56835 -15.17302 -15.12648 -14.84775 -14.66285 -14.49759 -14.21009 -14.03420 -13.46284 -13.07073 -12.90475 -12.83133 -12.58884 -12.51733 -12.47210 -12.42633 -12.36094 -12.20575 -11.94659 -11.82341 -11.71496 -11.51463 -11.46007 -11.18625 -11.04315 -10.90895 -10.54130 -10.14473 -9.62139 -9.55552 -9.28204 -9.01890 -8.32741 -8.16787 -8.06038 -7.49133 -6.62340 -4.77171 1.98111 2.13522 2.20645 2.81592 2.86344 2.96431 3.07827 3.12326 3.32984 3.73551 3.93864 3.98114 4.07278 4.59004 4.68230 5.01919 5.17405 5.22057 5.30654 5.31348 5.40697 5.49781 5.54898 5.62817 5.70598 5.77690 5.79027 5.89403 5.92425 6.06770 6.12797 6.19006 6.20647 6.22641 6.27731 6.30776 6.38605 6.48966 6.71342 6.78736 6.80299 7.11629 7.23208 7.34674 7.46535 7.49650 7.53399 7.79824 8.01568 8.23828 8.39890 8.79237 8.95228 10.39934 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007978 B = 0.005177 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.745419 B = 5407.756522 C = 8009.467462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.444 3.556 3 O -0.464 6.464 4 C -0.279 4.279 5 C 0.083 3.917 6 C -0.094 4.094 7 N -0.495 5.495 8 H 0.452 0.548 9 C -0.043 4.043 10 C 0.591 3.409 11 O -0.546 6.546 12 N -0.596 5.596 13 C 0.218 3.782 14 C -0.563 4.563 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.878 5.878 18 Si 0.898 3.102 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.200 3.800 23 C -0.016 4.016 24 C -0.204 4.204 25 C -0.218 4.218 26 C -0.049 4.049 27 O -0.163 6.163 28 C -0.057 4.057 29 C -0.088 4.088 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.039 0.961 38 H 0.274 0.726 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.197 0.803 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 2.206 -4.126 4.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.320 3.680 3 O -0.338 6.338 4 C -0.286 4.286 5 C -0.042 4.042 6 C -0.152 4.152 7 N -0.104 5.104 8 H 0.313 0.687 9 C -0.156 4.156 10 C 0.381 3.619 11 O -0.425 6.425 12 N -0.326 5.326 13 C 0.097 3.903 14 C -0.601 4.601 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.724 3.276 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C 0.077 3.923 23 C -0.068 4.068 24 C -0.224 4.224 25 C -0.237 4.237 26 C -0.118 4.118 27 O -0.058 6.058 28 C -0.065 4.065 29 C -0.145 4.145 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.213 0.787 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.355 2.662 -4.648 5.525 hybrid contribution -0.099 -0.957 1.200 1.538 sum -1.453 1.705 -3.449 4.112 Atomic orbital electron populations 1.22276 0.94447 1.04004 1.04661 1.21661 0.90867 0.86804 0.68702 1.90512 1.72746 1.34694 1.35840 1.19638 1.14976 1.00793 0.93213 1.20652 0.99066 0.89460 0.95066 1.20447 1.02802 1.02288 0.89644 1.43963 1.39398 1.19657 1.07394 0.68724 1.19593 1.12699 1.00367 0.82970 1.17162 0.77822 0.80296 0.86616 1.90714 1.62883 1.75651 1.13242 1.48097 1.51513 1.23328 1.09708 1.19827 0.98456 0.98119 0.73884 1.21704 1.06885 1.39588 0.91965 0.90828 1.25106 0.96736 0.94882 0.97261 1.69946 1.30506 1.43475 1.07485 0.86391 0.81746 0.79792 0.79671 1.19116 1.20205 1.20230 1.19704 0.86839 0.90294 0.95484 1.23181 0.98011 0.99392 0.86249 1.21652 0.91600 1.07043 1.02079 1.21782 1.00358 1.05275 0.96316 1.23981 0.80907 1.05135 1.01775 1.84120 1.25107 1.59179 1.37365 1.19336 0.99544 0.93019 0.94568 1.20328 1.00568 1.02129 0.91444 0.88976 0.90456 0.89052 0.90398 0.90464 0.90474 0.93226 0.94406 0.91615 0.86887 0.89026 0.83474 0.83877 0.78656 0.91964 0.89537 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.25 10.23 36.01 0.37 -1.88 16 2 C 0.44 7.13 6.55 -30.93 -0.20 6.92 16 3 O -0.46 -8.73 17.85 5.52 0.10 -8.63 16 4 C -0.28 -5.07 5.81 -105.11 -0.61 -5.68 16 5 C 0.08 1.53 7.22 -81.46 -0.59 0.95 16 6 C -0.09 -1.40 10.19 36.00 0.37 -1.03 16 7 N -0.50 -10.22 4.72 -5.55 -0.03 -10.24 16 8 H 0.45 9.80 3.18 -40.82 -0.13 9.67 16 9 C -0.04 -0.90 6.57 -82.40 -0.54 -1.44 16 10 C 0.59 12.86 7.61 -12.78 -0.10 12.76 16 11 O -0.55 -12.31 14.33 5.22 0.07 -12.24 16 12 N -0.60 -12.25 2.45 -177.91 -0.44 -12.69 16 13 C 0.22 4.78 4.67 -5.19 -0.02 4.75 16 14 C -0.56 -12.83 7.34 -34.44 -0.25 -13.08 16 15 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 16 C 0.07 1.52 5.07 -17.82 -0.09 1.43 16 17 N -0.88 -20.90 13.29 55.43 0.74 -20.16 16 18 Si 0.90 18.16 29.54 -169.99 -5.02 13.14 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 22 C 0.20 3.58 5.87 -5.20 -0.03 3.55 16 23 C -0.02 -0.29 6.89 -35.62 -0.25 -0.54 16 24 C -0.20 -3.34 10.81 -39.70 -0.43 -3.77 16 25 C -0.22 -3.16 10.91 -39.70 -0.43 -3.60 16 26 C -0.05 -0.71 12.09 29.42 0.36 -0.36 16 27 O -0.16 -2.93 10.65 5.71 0.06 -2.87 16 28 C -0.06 -1.11 6.21 -104.07 -0.65 -1.76 16 29 C -0.09 -1.51 9.72 36.01 0.35 -1.16 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.79 8.12 -51.94 -0.42 0.37 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.12 8.05 -51.93 -0.42 0.71 16 37 H 0.04 0.89 5.20 -51.93 -0.27 0.62 16 38 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 39 H 0.11 1.82 8.06 -51.93 -0.42 1.40 16 40 H 0.09 1.61 7.55 -51.93 -0.39 1.21 16 41 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 42 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 1.57 6.28 -51.93 -0.33 1.24 16 46 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -28.61 391.48 -7.51 -36.11 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -6.14 Total: 15.61 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.75 Total: -3.94 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.27 Total: -43.09 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.23 Total: -23.73 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.61 -7.51 -36.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065613898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.649 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds