Wall clock time and date at job start Tue Mar 31 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00306 * 2 1 4 4 H 1.48505 * 109.47121 * 269.99716 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99480 * 3 2 1 6 6 H 1.48503 * 109.47373 * 149.99382 * 3 2 1 7 7 C 1.37885 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99332 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00164 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47005 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99936 * 275.00355 * 10 9 7 12 12 C 1.52999 * 109.46773 * 274.99778 * 11 10 9 13 13 C 1.53781 * 113.61684 * 274.13859 * 12 11 10 14 14 C 1.53960 * 87.02195 * 220.05154 * 13 12 11 15 15 C 1.53783 * 87.11117 * 25.36007 * 14 13 12 16 16 S 1.65599 * 119.99727 * 95.00367 * 10 9 7 17 17 O 1.42100 * 106.40241 * 156.45875 * 16 10 9 18 18 O 1.42096 * 106.40379 * 23.53497 * 16 10 9 19 19 C 1.76199 * 107.21658 * 269.99791 * 16 10 9 20 20 C 1.38256 * 119.96505 * 269.72683 * 19 16 10 21 21 C 1.38222 * 120.07158 * 179.76631 * 20 19 16 22 22 C 1.38410 * 119.99824 * 0.51231 * 21 20 19 23 23 F 1.35096 * 120.03544 * 179.72528 * 22 21 20 24 24 C 1.38651 * 119.92846 * 359.73987 * 22 21 20 25 25 F 1.35099 * 120.03707 * 180.02562 * 24 22 21 26 26 C 1.38210 * 119.96745 * 89.99981 * 19 16 10 27 27 H 0.96996 * 119.99811 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46986 * 60.00347 * 9 7 2 29 29 H 1.08998 * 109.47288 * 300.00204 * 9 7 2 30 30 H 1.08997 * 109.47561 * 34.99712 * 11 10 9 31 31 H 1.09003 * 109.47156 * 155.00554 * 11 10 9 32 32 H 1.08997 * 112.85423 * 45.33634 * 12 11 10 33 33 H 1.09000 * 113.61369 * 334.56879 * 13 12 11 34 34 H 1.09000 * 113.61648 * 105.47414 * 13 12 11 35 35 H 1.09004 * 113.53741 * 270.81240 * 14 13 12 36 36 H 1.08999 * 113.66825 * 139.93194 * 14 13 12 37 37 H 1.09001 * 113.61614 * 220.08990 * 15 14 13 38 38 H 1.09006 * 113.68822 * 89.19566 * 15 14 13 39 39 H 1.08000 * 119.96415 * 0.02562 * 20 19 16 40 40 H 1.07998 * 119.99792 * 180.24911 * 21 20 19 41 41 H 1.08002 * 119.99723 * 359.96321 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.1391 -3.3032 1.2648 12 6 5.4958 -2.9786 1.8932 13 6 6.6406 -3.8686 1.3813 14 6 7.1566 -3.9009 2.8316 15 6 5.7081 -3.6288 3.2706 16 16 4.3943 -3.3140 -1.4277 17 8 5.3103 -4.3509 -1.1039 18 8 4.6919 -2.2735 -2.3485 19 6 2.9378 -4.1054 -2.0252 20 6 2.6662 -5.4130 -1.6674 21 6 1.5218 -6.0344 -2.1309 22 6 0.6518 -5.3510 -2.9627 23 9 -0.4641 -5.9595 -3.4206 24 6 0.9268 -4.0415 -3.3257 25 9 0.0789 -3.3722 -4.1370 26 6 2.0709 -3.4203 -2.8555 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6802 0.8912 29 1 3.8752 -0.6805 -0.8888 30 1 3.3424 -3.0043 1.9459 31 1 4.0732 -4.3747 1.0762 32 1 5.7280 -1.9138 1.8727 33 1 6.3082 -4.8397 1.0146 34 1 7.3124 -3.3610 0.6892 35 1 7.8441 -3.0885 3.0672 36 1 7.5307 -4.8767 3.1413 37 1 5.6280 -2.9278 4.1015 38 1 5.1190 -4.5334 3.4218 39 1 3.3467 -5.9481 -1.0218 40 1 1.3088 -7.0545 -1.8475 41 1 2.2862 -2.4002 -3.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065622337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:05 Heat of formation + Delta-G solvation = -113.784429 kcal Electronic energy + Delta-G solvation = -29230.983349 eV Core-core repulsion = 24874.911480 eV Total energy + Delta-G solvation = -4356.071869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.45866 -48.48184 -38.80660 -38.76996 -36.88130 -35.49521 -35.42213 -32.52314 -31.08896 -30.51243 -28.95904 -26.59965 -25.32213 -23.56969 -23.09902 -22.86713 -21.75129 -19.17592 -18.98333 -18.06153 -17.50274 -17.20963 -16.96509 -16.84879 -16.25464 -15.95203 -15.63190 -15.17612 -14.88612 -14.64195 -14.45879 -14.33267 -14.05717 -13.89195 -13.37117 -13.01241 -12.78912 -12.63355 -12.34143 -12.29899 -12.08228 -12.02500 -11.82382 -11.75453 -11.47514 -11.40244 -11.31370 -10.93318 -10.73339 -10.60432 -10.40069 -10.29190 -10.06226 -9.89768 -9.63109 -9.25784 -8.86441 -8.71152 -8.18592 -6.21715 -4.23954 0.47895 0.86596 1.01929 3.04929 3.22176 3.28911 3.31686 3.46377 3.75355 4.10217 4.27459 4.29358 4.39425 4.73328 4.80765 4.87262 4.96669 4.99223 5.07640 5.11700 5.15092 5.37078 5.47106 5.70125 5.72308 5.79243 5.82004 5.87019 5.90166 5.98446 5.99080 6.05769 6.18966 6.21512 6.35626 6.57279 6.69179 6.74184 6.77008 7.00262 7.24671 7.45591 8.32769 8.80645 9.37955 10.90405 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.005866 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.274768 B = 4772.268244 C = 6946.259020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.212 3.788 10 N -0.970 5.970 11 C 0.140 3.860 12 C -0.131 4.131 13 C -0.133 4.133 14 C -0.146 4.146 15 C -0.132 4.132 16 S 2.692 3.308 17 O -0.961 6.961 18 O -0.956 6.956 19 C -0.654 4.654 20 C -0.007 4.007 21 C -0.153 4.153 22 C 0.114 3.886 23 F -0.125 7.125 24 C 0.052 3.948 25 F -0.124 7.124 26 C 0.000 4.000 27 H 0.266 0.734 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.963 -10.877 0.953 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.693 3.307 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.098 0.902 9 C 0.089 3.911 10 N -0.808 5.808 11 C 0.014 3.986 12 C -0.151 4.151 13 C -0.171 4.171 14 C -0.183 4.183 15 C -0.170 4.170 16 S 2.779 3.221 17 O -0.951 6.951 18 O -0.946 6.946 19 C -0.738 4.738 20 C -0.026 4.026 21 C -0.173 4.173 22 C 0.094 3.906 23 F -0.104 7.104 24 C 0.031 3.969 25 F -0.102 7.102 26 C -0.020 4.020 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.479 -10.745 0.478 13.696 hybrid contribution -1.161 0.844 -0.201 1.449 sum 7.318 -9.901 0.277 12.315 Atomic orbital electron populations 1.69888 1.06223 1.27251 1.49340 1.24849 0.94685 0.98956 0.94066 0.86987 0.80516 0.83974 0.79204 1.19622 1.20989 1.18657 1.21424 0.89274 0.95015 1.52982 0.90221 1.19673 0.95705 0.76895 0.98828 1.57152 1.81181 1.23658 1.18820 1.21203 0.96840 0.94840 0.85700 1.23050 0.95754 1.00340 0.95990 1.23078 0.97531 1.01138 0.95346 1.22865 0.96510 1.01234 0.97716 1.22851 0.96705 1.00756 0.96667 1.02035 0.73633 0.73162 0.73224 1.93541 1.59051 1.58476 1.84038 1.93556 1.82813 1.55703 1.62522 1.31325 1.24459 1.06114 1.11891 1.20785 0.94960 0.92094 0.94805 1.21097 0.94971 1.01650 0.99571 1.17916 0.84976 0.90365 0.97365 1.91537 1.49268 1.82630 1.86914 1.17665 0.91848 0.89959 0.97430 1.91553 1.68985 1.79756 1.69904 1.20877 0.89555 1.00394 0.91126 0.92376 0.93951 0.93709 0.89455 0.91112 0.88825 0.88672 0.92056 0.90748 0.91891 0.91665 0.90086 0.82933 0.83131 0.81738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.96 55.43 0.77 -24.74 16 2 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.03 27.47 -169.99 -4.67 15.36 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 7 C -0.55 -13.77 9.94 -34.44 -0.34 -14.12 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.21 4.54 4.50 -5.19 -0.02 4.52 16 10 N -0.97 -17.41 2.77 -115.67 -0.32 -17.73 16 11 C 0.14 2.10 5.22 -4.04 -0.02 2.08 16 12 C -0.13 -1.78 3.96 -89.80 -0.36 -2.13 16 13 C -0.13 -1.74 6.32 -25.82 -0.16 -1.90 16 14 C -0.15 -1.58 8.09 -25.82 -0.21 -1.78 16 15 C -0.13 -1.46 7.65 -25.91 -0.20 -1.66 16 16 S 2.69 46.84 5.65 -107.50 -0.61 46.24 16 17 O -0.96 -15.77 13.92 -57.17 -0.80 -16.57 16 18 O -0.96 -19.36 15.83 -57.17 -0.91 -20.26 16 19 C -0.65 -10.76 5.97 -39.58 -0.24 -11.00 16 20 C -0.01 -0.10 9.52 -39.58 -0.38 -0.47 16 21 C -0.15 -1.96 10.02 -39.52 -0.40 -2.36 16 22 C 0.11 1.76 7.31 -39.37 -0.29 1.47 16 23 F -0.13 -1.90 17.18 2.25 0.04 -1.86 16 24 C 0.05 0.91 7.31 -39.36 -0.29 0.62 16 25 F -0.12 -2.27 17.18 2.25 0.04 -2.23 16 26 C 0.00 0.01 9.50 -39.53 -0.38 -0.37 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.04 0.89 7.17 -51.93 -0.37 0.51 16 29 H 0.05 0.99 6.34 -51.93 -0.33 0.66 16 30 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 31 H 0.07 0.90 7.34 -51.93 -0.38 0.52 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.15 1.62 7.61 -52.49 -0.40 1.22 16 40 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.17 3.02 7.61 -52.49 -0.40 2.62 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -29.76 359.90 -9.61 -39.37 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.21 Total: 2.11 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -3.37 Total: -25.12 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.45 Total: -42.47 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.70 Total: -36.83 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.09 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Atomic # 16 Polarization: 46.84 SS G_CDS: -0.61 Total: 46.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.76 -9.61 -39.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065622337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.418 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds