Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00306 * 2 1 4 4 H 1.48505 * 109.47121 * 269.99716 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99480 * 3 2 1 6 6 H 1.48503 * 109.47373 * 149.99382 * 3 2 1 7 7 C 1.37885 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99332 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00164 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47005 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99936 * 275.00355 * 10 9 7 12 12 C 1.52999 * 109.46773 * 274.99778 * 11 10 9 13 13 C 1.53781 * 113.61684 * 274.13859 * 12 11 10 14 14 C 1.53960 * 87.02195 * 220.05154 * 13 12 11 15 15 C 1.53783 * 87.11117 * 25.36007 * 14 13 12 16 16 S 1.65599 * 119.99727 * 95.00367 * 10 9 7 17 17 O 1.42100 * 106.40241 * 156.45875 * 16 10 9 18 18 O 1.42096 * 106.40379 * 23.53497 * 16 10 9 19 19 C 1.76199 * 107.21658 * 269.99791 * 16 10 9 20 20 C 1.38256 * 119.96505 * 269.72683 * 19 16 10 21 21 C 1.38222 * 120.07158 * 179.76631 * 20 19 16 22 22 C 1.38410 * 119.99824 * 0.51231 * 21 20 19 23 23 F 1.35096 * 120.03544 * 179.72528 * 22 21 20 24 24 C 1.38651 * 119.92846 * 359.73987 * 22 21 20 25 25 F 1.35099 * 120.03707 * 180.02562 * 24 22 21 26 26 C 1.38210 * 119.96745 * 89.99981 * 19 16 10 27 27 H 0.96996 * 119.99811 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46986 * 60.00347 * 9 7 2 29 29 H 1.08998 * 109.47288 * 300.00204 * 9 7 2 30 30 H 1.08997 * 109.47561 * 34.99712 * 11 10 9 31 31 H 1.09003 * 109.47156 * 155.00554 * 11 10 9 32 32 H 1.08997 * 112.85423 * 45.33634 * 12 11 10 33 33 H 1.09000 * 113.61369 * 334.56879 * 13 12 11 34 34 H 1.09000 * 113.61648 * 105.47414 * 13 12 11 35 35 H 1.09004 * 113.53741 * 270.81240 * 14 13 12 36 36 H 1.08999 * 113.66825 * 139.93194 * 14 13 12 37 37 H 1.09001 * 113.61614 * 220.08990 * 15 14 13 38 38 H 1.09006 * 113.68822 * 89.19566 * 15 14 13 39 39 H 1.08000 * 119.96415 * 0.02562 * 20 19 16 40 40 H 1.07998 * 119.99792 * 180.24911 * 21 20 19 41 41 H 1.08002 * 119.99723 * 359.96321 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.1391 -3.3032 1.2648 12 6 5.4958 -2.9786 1.8932 13 6 6.6406 -3.8686 1.3813 14 6 7.1566 -3.9009 2.8316 15 6 5.7081 -3.6288 3.2706 16 16 4.3943 -3.3140 -1.4277 17 8 5.3103 -4.3509 -1.1039 18 8 4.6919 -2.2735 -2.3485 19 6 2.9378 -4.1054 -2.0252 20 6 2.6662 -5.4130 -1.6674 21 6 1.5218 -6.0344 -2.1309 22 6 0.6518 -5.3510 -2.9627 23 9 -0.4641 -5.9595 -3.4206 24 6 0.9268 -4.0415 -3.3257 25 9 0.0789 -3.3722 -4.1370 26 6 2.0709 -3.4203 -2.8555 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6802 0.8912 29 1 3.8752 -0.6805 -0.8888 30 1 3.3424 -3.0043 1.9459 31 1 4.0732 -4.3747 1.0762 32 1 5.7280 -1.9138 1.8727 33 1 6.3082 -4.8397 1.0146 34 1 7.3124 -3.3610 0.6892 35 1 7.8441 -3.0885 3.0672 36 1 7.5307 -4.8767 3.1413 37 1 5.6280 -2.9278 4.1015 38 1 5.1190 -4.5334 3.4218 39 1 3.3467 -5.9481 -1.0218 40 1 1.3088 -7.0545 -1.8475 41 1 2.2862 -2.4002 -3.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065622337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -130.989730 kcal Electronic energy + Delta-G solvation = -29231.729427 eV Core-core repulsion = 24874.911480 eV Total energy + Delta-G solvation = -4356.817947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.73977 -49.80872 -39.99091 -39.83110 -38.32203 -36.92331 -36.88845 -34.46684 -32.30711 -31.75643 -30.53184 -28.03749 -26.26103 -24.84959 -24.35000 -24.29243 -23.16582 -20.36001 -20.15249 -19.39492 -18.99809 -18.69895 -18.48392 -18.24177 -17.54506 -17.30781 -17.08359 -16.27877 -16.21473 -16.13118 -15.74201 -15.61127 -15.38492 -15.21083 -14.59264 -14.52474 -14.29944 -14.05233 -13.71222 -13.59661 -13.45540 -13.21562 -13.19842 -13.10134 -12.92232 -12.76383 -12.62601 -12.42485 -12.18116 -12.05392 -11.82663 -11.71131 -11.38791 -11.06484 -10.89937 -10.76749 -10.46675 -10.14463 -9.65955 -8.27909 -6.32153 -0.80078 -0.49440 -0.20755 1.37091 1.40854 1.47172 1.78125 2.12243 2.35066 2.52067 2.72626 2.98365 3.08075 3.21938 3.47916 3.74653 3.76493 3.91026 3.94186 4.00817 4.11119 4.23280 4.32176 4.49132 4.57415 4.65940 4.70316 4.73402 4.76281 4.93541 4.99750 5.03756 5.12022 5.14254 5.24248 5.30561 5.34975 5.47637 5.47928 5.58007 5.76917 5.84939 6.30211 6.74133 7.32622 8.87165 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.005866 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.274768 B = 4772.268244 C = 6946.259020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.022 3.978 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.236 1.236 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.219 3.781 10 N -0.974 5.974 11 C 0.132 3.868 12 C -0.140 4.140 13 C -0.139 4.139 14 C -0.136 4.136 15 C -0.124 4.124 16 S 2.702 3.298 17 O -0.948 6.948 18 O -0.990 6.990 19 C -0.665 4.665 20 C 0.002 3.998 21 C -0.132 4.132 22 C 0.112 3.888 23 F -0.124 7.124 24 C 0.024 3.976 25 F -0.138 7.138 26 C -0.025 4.025 27 H 0.265 0.735 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 -13.105 2.624 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.177 4.177 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.159 1.159 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.095 3.905 10 N -0.811 5.811 11 C 0.007 3.993 12 C -0.160 4.160 13 C -0.177 4.177 14 C -0.174 4.174 15 C -0.162 4.162 16 S 2.791 3.209 17 O -0.938 6.938 18 O -0.980 6.980 19 C -0.750 4.750 20 C -0.017 4.017 21 C -0.151 4.151 22 C 0.092 3.908 23 F -0.102 7.102 24 C 0.003 3.997 25 F -0.117 7.117 26 C -0.045 4.045 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.209 0.791 40 H 0.217 0.783 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.278 -12.985 2.170 16.701 hybrid contribution -1.721 1.379 -0.741 2.327 sum 8.557 -11.606 1.429 14.490 Atomic orbital electron populations 1.70024 1.07965 1.27941 1.51946 1.25625 0.95297 1.02502 0.94285 0.86145 0.80425 0.79996 0.79225 1.19909 1.20929 1.15928 1.21647 0.91204 0.93714 1.50724 0.92938 1.19391 0.93120 0.79168 0.98860 1.57111 1.80999 1.22661 1.20325 1.21496 0.97543 0.95942 0.84323 1.23083 0.94986 1.00031 0.97933 1.23113 0.97262 1.00723 0.96580 1.22831 0.96455 1.02369 0.95706 1.22862 0.96996 1.01138 0.95181 1.01607 0.73766 0.72897 0.72592 1.93547 1.58806 1.57639 1.83792 1.93512 1.83669 1.57276 1.63578 1.31208 1.23874 1.07612 1.12306 1.21318 0.95535 0.90734 0.94083 1.21621 0.93218 1.03217 0.97023 1.18126 0.85470 0.89616 0.97618 1.91542 1.49325 1.82338 1.86980 1.17935 0.92028 0.91261 0.98450 1.91501 1.69396 1.80322 1.70489 1.20780 0.90777 1.00091 0.92828 0.92578 0.92843 0.94410 0.90263 0.88517 0.90050 0.88605 0.93305 0.90330 0.90224 0.91121 0.88647 0.79087 0.78334 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.65 13.96 21.45 0.30 -55.35 16 2 C 0.02 1.20 5.47 84.66 0.46 1.66 16 3 Si 0.92 41.46 27.47 68.60 1.88 43.35 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 7 C -0.53 -27.34 9.94 25.60 0.25 -27.09 16 8 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 9 C 0.22 9.36 4.50 85.63 0.39 9.74 16 10 N -0.97 -34.17 2.77 -519.85 -1.44 -35.61 16 11 C 0.13 3.69 5.22 86.38 0.45 4.14 16 12 C -0.14 -3.50 3.96 -10.27 -0.04 -3.54 16 13 C -0.14 -3.28 6.32 31.18 0.20 -3.08 16 14 C -0.14 -2.51 8.09 31.18 0.25 -2.25 16 15 C -0.12 -2.36 7.65 31.12 0.24 -2.12 16 16 S 2.70 92.07 5.65 -56.49 -0.32 91.75 16 17 O -0.95 -28.95 13.92 -128.00 -1.78 -30.73 16 18 O -0.99 -40.80 15.83 -128.00 -2.03 -42.83 16 19 C -0.66 -21.40 5.97 22.27 0.13 -21.26 16 20 C 0.00 0.05 9.52 22.27 0.21 0.27 16 21 C -0.13 -2.90 10.02 22.31 0.22 -2.68 16 22 C 0.11 3.31 7.31 22.41 0.16 3.47 16 23 F -0.12 -3.57 17.18 44.97 0.77 -2.80 16 24 C 0.02 0.86 7.31 22.41 0.16 1.03 16 25 F -0.14 -5.38 17.18 44.97 0.77 -4.60 16 26 C -0.02 -0.92 9.50 22.30 0.21 -0.71 16 27 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.05 2.17 7.17 -2.39 -0.02 2.16 16 29 H 0.04 1.69 6.34 -2.39 -0.02 1.67 16 30 H 0.08 2.35 8.11 -2.39 -0.02 2.33 16 31 H 0.10 2.16 7.34 -2.39 -0.02 2.15 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 33 H 0.10 2.23 7.00 -2.39 -0.02 2.21 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.56 8.10 -2.38 -0.02 1.54 16 39 H 0.19 3.06 7.61 -2.91 -0.02 3.04 16 40 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.14 5.77 7.61 -2.91 -0.02 5.74 16 Total: -1.00 -66.74 359.90 2.47 -64.27 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.00 Total: 14.98 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 3.31 Total: -42.43 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -1.14 Total: -90.96 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -3.81 Total: -73.56 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 1.55 Total: -7.40 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.35 kcal Atomic # 16 Polarization: 92.07 SS G_CDS: -0.32 Total: 91.75 kcal Total: -66.74 2.47 -64.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065622337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.724 kcal (2) G-P(sol) polarization free energy of solvation -66.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds