Wall clock time and date at job start Tue Mar 31 2020 07:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38082 * 126.31084 * 2 1 4 4 C 1.47408 * 126.40942 * 359.97438 * 3 2 1 5 5 O 1.21609 * 119.99663 * 43.25200 * 4 3 2 6 6 N 1.34778 * 120.00437 * 223.24971 * 4 3 2 7 7 C 1.46504 * 119.99586 * 5.89624 * 6 4 3 8 8 C 1.50701 * 109.47155 * 264.20895 * 7 6 4 9 9 H 1.07993 * 119.99993 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99825 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99960 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99950 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46997 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47319 * 119.99737 * 12 10 8 15 15 H 1.48502 * 109.47022 * 240.00079 * 12 10 8 16 16 C 1.46497 * 120.00231 * 185.89793 * 6 4 3 17 17 C 1.52995 * 109.47058 * 116.71616 * 16 6 4 18 18 C 1.53001 * 109.46998 * 236.71857 * 16 6 4 19 19 C 1.41321 * 107.17900 * 179.73864 * 3 2 1 20 20 N 1.30478 * 108.06774 * 0.25421 * 19 3 2 21 21 N 1.34531 * 126.31078 * 180.18774 * 2 1 3 22 22 C 1.40211 * 125.76819 * 359.97438 * 21 2 1 23 23 C 1.38842 * 120.03726 * 221.31346 * 22 21 2 24 24 C 1.38101 * 119.95005 * 179.70085 * 23 22 21 25 25 C 1.38484 * 120.04676 * 0.59421 * 24 23 22 26 26 F 1.35101 * 119.96055 * 179.69956 * 25 24 23 27 27 C 1.38488 * 120.08043 * 359.68345 * 25 24 23 28 28 C 1.38095 * 120.04405 * 0.02562 * 27 25 24 29 29 H 1.08998 * 109.46708 * 94.07653 * 1 2 3 30 30 H 1.09000 * 109.47064 * 214.06860 * 1 2 3 31 31 H 1.08998 * 109.47044 * 334.07397 * 1 2 3 32 32 H 1.09000 * 109.47155 * 24.21351 * 7 6 4 33 33 H 1.08996 * 109.46453 * 144.20875 * 7 6 4 34 34 H 0.97001 * 119.99904 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.47036 * 356.71728 * 16 6 4 36 36 H 1.09008 * 109.47116 * 179.97438 * 17 16 6 37 37 H 1.08996 * 109.47541 * 299.99789 * 17 16 6 38 38 H 1.09001 * 109.46875 * 60.00544 * 17 16 6 39 39 H 1.08996 * 109.47122 * 299.99819 * 18 16 6 40 40 H 1.08998 * 109.47011 * 59.99768 * 18 16 6 41 41 H 1.08994 * 109.47217 * 179.97438 * 18 16 6 42 42 H 1.08003 * 125.96638 * 180.24587 * 19 3 2 43 43 H 1.08000 * 120.02237 * 0.02562 * 23 22 21 44 44 H 1.08004 * 119.97534 * 180.27334 * 24 23 22 45 45 H 1.08009 * 119.97941 * 179.97438 * 27 25 24 46 46 H 1.08006 * 120.02016 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1127 0.0000 4 6 1.8868 2.5202 -0.0005 5 8 0.9735 2.8731 0.7207 6 7 2.4987 3.4161 -0.8003 7 6 3.5097 2.9692 -1.7618 8 6 4.8818 3.1333 -1.1606 9 1 4.9900 3.5303 -0.1622 10 6 5.9991 2.7765 -1.8854 11 7 5.8674 2.2926 -3.1012 12 14 7.6999 2.9793 -1.1401 13 1 7.5765 3.5396 0.2296 14 1 8.3730 1.6572 -1.0757 15 1 8.5023 3.9028 -1.9818 16 6 2.1528 4.8367 -0.7081 17 6 3.3790 5.6318 -0.2554 18 6 1.6958 5.3403 -2.0787 19 6 3.6598 0.6495 0.0062 20 7 3.6356 -0.6550 0.0041 21 7 2.3036 -1.0841 -0.0036 22 6 1.8722 -2.4181 -0.0074 23 6 2.5176 -3.3596 0.7830 24 6 2.0873 -4.6718 0.7825 25 6 1.0206 -5.0515 -0.0149 26 9 0.6049 -6.3369 -0.0186 27 6 0.3793 -4.1149 -0.8083 28 6 0.8029 -2.8006 -0.8060 29 1 -0.3633 -0.0731 -1.0251 30 1 -0.3633 -0.8513 0.5757 31 1 -0.3633 0.9242 0.4493 32 1 3.3421 1.9197 -2.0038 33 1 3.4369 3.5676 -2.6699 34 1 6.6534 2.0412 -3.6110 35 1 1.3474 4.9684 0.0144 36 1 3.1218 6.6889 -0.1873 37 1 3.7046 5.2731 0.7210 38 1 4.1844 5.5001 -0.9781 39 1 2.5012 5.2086 -2.8012 40 1 0.8222 4.7737 -2.4011 41 1 1.4380 6.3971 -2.0100 42 1 4.5455 1.2675 0.0115 43 1 3.3523 -3.0648 1.4018 44 1 2.5862 -5.4036 1.4006 45 1 -0.4522 -4.4129 -1.4300 46 1 0.3022 -2.0704 -1.4247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065625682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:07 Heat of formation + Delta-G solvation = 21.812513 kcal Electronic energy + Delta-G solvation = -30507.799367 eV Core-core repulsion = 26313.749622 eV Total energy + Delta-G solvation = -4194.049745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.13619 -41.41060 -39.26066 -38.52422 -35.74296 -33.56981 -32.88973 -32.12945 -31.35711 -31.10950 -28.56877 -27.39996 -26.94253 -26.60001 -23.60132 -23.41230 -22.96691 -22.15577 -20.58864 -19.68206 -18.06115 -17.93521 -17.36280 -16.68601 -16.54170 -16.07198 -15.82152 -15.39917 -14.97351 -14.67439 -14.42697 -14.14854 -14.03986 -13.87465 -13.54582 -13.30913 -13.19192 -13.08562 -12.78179 -12.66026 -12.47608 -12.36544 -12.12733 -11.87331 -11.71861 -11.45893 -11.40391 -11.31361 -10.98137 -10.84370 -10.67401 -10.46838 -10.31790 -9.92406 -9.67631 -9.57426 -9.47044 -9.10285 -8.61533 -8.58592 -7.96542 -7.65908 -6.21001 -4.27558 0.60821 0.88608 1.99918 2.52486 2.87210 3.20367 3.27176 3.30606 3.32754 3.80188 3.96207 4.03084 4.31558 4.40463 4.51347 4.71840 4.88702 4.90069 5.09260 5.16451 5.33653 5.37371 5.49270 5.56230 5.60763 5.72910 5.76991 5.81476 5.83393 5.89468 5.97825 6.03204 6.14519 6.16866 6.24142 6.32021 6.42843 6.47112 6.49249 6.76589 6.85775 7.08748 7.12194 7.27782 7.30598 7.61843 7.73503 8.01520 8.05546 8.39081 8.79067 9.05277 9.38418 10.84751 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.003408 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.361191 B = 8213.637897 C = 9781.738380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.127 3.873 3 C -0.258 4.258 4 C 0.594 3.406 5 O -0.578 6.578 6 N -0.584 5.584 7 C 0.235 3.765 8 C -0.538 4.538 9 H 0.068 0.932 10 C 0.069 3.931 11 N -0.882 5.882 12 Si 0.887 3.113 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.283 1.283 16 C 0.140 3.860 17 C -0.157 4.157 18 C -0.158 4.158 19 C 0.123 3.877 20 N -0.305 5.305 21 N -0.333 5.333 22 C 0.156 3.844 23 C -0.081 4.081 24 C -0.135 4.135 25 C 0.090 3.910 26 F -0.138 7.138 27 C -0.133 4.133 28 C -0.101 4.101 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.219 0.781 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 -8.140 3.766 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.000 4.000 3 C -0.272 4.272 4 C 0.382 3.618 5 O -0.460 6.460 6 N -0.313 5.313 7 C 0.115 3.885 8 C -0.577 4.577 9 H 0.086 0.914 10 C -0.135 4.135 11 N -0.519 5.519 12 Si 0.714 3.286 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.209 1.209 16 C 0.036 3.964 17 C -0.215 4.215 18 C -0.216 4.216 19 C -0.065 4.065 20 N -0.121 5.121 21 N -0.108 5.108 22 C 0.064 3.936 23 C -0.100 4.100 24 C -0.155 4.155 25 C 0.071 3.929 26 F -0.117 7.117 27 C -0.152 4.152 28 C -0.121 4.121 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.235 0.765 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.482 -9.179 3.941 13.773 hybrid contribution 0.811 0.548 0.045 0.980 sum -8.671 -8.631 3.987 12.868 Atomic orbital electron populations 1.20679 0.86867 1.05140 1.03069 1.21359 0.94309 0.85980 0.98307 1.20060 0.93227 0.93513 1.20389 1.17217 0.81162 0.84066 0.79333 1.90638 1.31277 1.80561 1.43561 1.48134 1.39857 1.05884 1.37462 1.19462 0.85193 0.96241 0.87622 1.21575 0.90576 1.43604 1.01927 0.91421 1.24948 0.99143 0.94720 0.94731 1.69930 1.30243 1.41726 1.10013 0.86601 0.84276 0.78101 0.79594 1.19412 1.20716 1.20861 1.20820 0.97526 0.80862 0.97199 1.22185 0.99142 0.97617 1.02522 1.22105 1.01507 1.00089 0.97875 1.25247 0.98819 0.90784 0.91663 1.77408 0.93518 1.14123 1.27014 1.45565 1.05298 1.02651 1.57292 1.17448 0.96422 0.81827 0.97866 1.20937 1.00044 0.91483 0.97580 1.21032 0.96999 0.96810 1.00610 1.17713 0.96503 0.78990 0.99718 1.91507 1.89540 1.35189 1.95466 1.20949 1.01681 0.92012 1.00592 1.20995 0.97099 0.96202 0.97818 0.90236 0.90943 0.87889 0.94233 0.94497 0.92527 0.89713 0.93489 0.92998 0.89911 0.91479 0.93111 0.92432 0.76477 0.83791 0.83887 0.83801 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 8.59 36.00 0.31 -1.01 16 2 C 0.13 2.20 6.82 -81.47 -0.56 1.64 16 3 C -0.26 -5.19 4.93 -105.05 -0.52 -5.70 16 4 C 0.59 12.50 7.37 -12.53 -0.09 12.41 16 5 O -0.58 -12.76 15.10 5.27 0.08 -12.68 16 6 N -0.58 -12.02 2.42 -168.74 -0.41 -12.43 16 7 C 0.23 5.33 4.36 -5.19 -0.02 5.31 16 8 C -0.54 -12.79 4.83 -34.44 -0.17 -12.95 16 9 H 0.07 1.62 7.05 -52.49 -0.37 1.25 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.88 -23.34 13.29 55.43 0.74 -22.60 16 12 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 C 0.14 2.53 3.25 -67.93 -0.22 2.31 16 17 C -0.16 -2.73 8.22 37.16 0.31 -2.42 16 18 C -0.16 -2.52 9.08 37.16 0.34 -2.18 16 19 C 0.12 2.56 9.96 -16.96 -0.17 2.39 16 20 N -0.30 -6.07 12.32 30.87 0.38 -5.69 16 21 N -0.33 -5.71 3.68 -6.50 -0.02 -5.74 16 22 C 0.16 2.18 6.11 -83.58 -0.51 1.67 16 23 C -0.08 -0.99 9.82 -39.41 -0.39 -1.38 16 24 C -0.14 -1.38 10.02 -39.54 -0.40 -1.77 16 25 C 0.09 0.94 7.30 -39.40 -0.29 0.65 16 26 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 27 C -0.13 -1.28 10.02 -39.54 -0.40 -1.68 16 28 C -0.10 -1.14 8.50 -39.41 -0.33 -1.47 16 29 H 0.08 0.90 7.62 -51.93 -0.40 0.50 16 30 H 0.07 0.80 7.43 -51.93 -0.39 0.42 16 31 H 0.10 1.51 6.74 -51.93 -0.35 1.16 16 32 H 0.04 0.98 6.06 -51.93 -0.31 0.66 16 33 H 0.04 0.89 6.31 -51.93 -0.33 0.56 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 35 H 0.08 1.57 6.91 -51.93 -0.36 1.21 16 36 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.05 0.94 8.05 -51.93 -0.42 0.52 16 38 H 0.08 1.59 6.58 -51.93 -0.34 1.25 16 39 H 0.07 1.15 6.62 -51.93 -0.34 0.81 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.22 4.81 5.42 -52.48 -0.28 4.53 16 43 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 45 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.14 1.44 6.57 -52.48 -0.34 1.10 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -28.47 377.81 -7.63 -36.11 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.91 Total: 6.75 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.20 Total: -2.58 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.68 Total: -46.45 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.47 -7.63 -36.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065625682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.919 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds