Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31321 * 1 3 3 Si 1.86791 * 120.00432 * 2 1 4 4 H 1.48504 * 109.47536 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47022 * 120.00160 * 3 2 1 7 7 C 1.39133 * 119.99268 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99411 * 188.98589 * 7 2 1 9 9 N 1.36655 * 120.00423 * 8.98786 * 7 2 1 10 10 C 1.34775 * 120.00173 * 198.51786 * 9 7 2 11 11 O 1.21855 * 119.99791 * 4.37545 * 10 9 7 12 12 C 1.41302 * 120.00276 * 184.37735 * 10 9 7 13 13 C 1.35979 * 120.00391 * 174.36495 * 12 10 9 14 14 C 1.40913 * 120.00298 * 179.97438 * 13 12 10 15 15 C 1.36122 * 120.17101 * 180.02562 * 14 13 12 16 16 C 1.46980 * 117.83133 * 181.11759 * 15 14 13 17 17 C 1.39654 * 121.37502 * 196.39502 * 16 15 14 18 18 C 1.38050 * 119.45789 * 179.65904 * 17 16 15 19 19 Cl 1.73605 * 119.83823 * 179.76153 * 18 17 16 20 20 C 1.38672 * 120.32490 * 359.74332 * 18 17 16 21 21 C 1.38295 * 120.63716 * 0.03946 * 20 18 17 22 22 C 1.38295 * 119.88376 * 359.97438 * 21 20 18 23 23 O 1.35617 * 121.27330 * 179.97438 * 22 21 20 24 24 C 1.42793 * 117.31840 * 145.95256 * 23 22 21 25 25 C 1.46502 * 120.00183 * 18.51670 * 9 7 2 26 26 C 1.53003 * 117.50134 * 128.42638 * 25 9 7 27 27 C 1.53008 * 117.49763 * 59.76528 * 25 9 7 28 28 H 0.97004 * 119.99825 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00116 * 354.37052 * 12 10 9 30 30 H 1.08008 * 119.99518 * 0.02562 * 13 12 10 31 31 H 1.07997 * 121.08612 * 0.84819 * 15 14 13 32 32 H 1.08002 * 120.28447 * 359.40801 * 17 16 15 33 33 H 1.07995 * 119.68444 * 180.02562 * 20 18 17 34 34 H 1.08002 * 120.05765 * 179.97438 * 21 20 18 35 35 H 1.08997 * 109.30639 * 288.07688 * 24 23 22 36 36 H 1.08999 * 109.30315 * 168.68439 * 24 23 22 37 37 H 1.09002 * 115.54875 * 274.10102 * 25 9 7 38 38 H 1.08997 * 117.49510 * 0.02562 * 26 25 9 39 39 H 1.08993 * 117.49718 * 145.01843 * 26 25 9 40 40 H 1.08991 * 117.49957 * 214.97775 * 27 25 9 41 41 H 1.08996 * 117.49360 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6176 0.0000 4 1 3.1010 1.6963 -1.2125 5 1 1.2823 2.7464 0.0006 6 1 3.1010 1.6961 1.2124 7 6 2.0087 -1.2050 -0.0005 8 1 3.0788 -1.2108 0.1456 9 7 1.3380 -2.3811 -0.1859 10 6 1.9096 -3.5471 0.1750 11 8 2.9897 -3.5472 0.7391 12 6 1.2564 -4.7694 -0.1008 13 6 1.8823 -5.9484 0.1586 14 6 1.2307 -7.1673 -0.1159 15 6 1.8539 -8.3495 0.1428 16 6 1.1369 -9.5896 -0.1865 17 6 1.5338 -10.8207 0.3400 18 6 0.8273 -11.9598 0.0097 19 17 1.3158 -13.4963 0.6536 20 6 -0.2708 -11.8828 -0.8336 21 6 -0.6742 -10.6676 -1.3563 22 6 0.0210 -9.5155 -1.0372 23 8 -0.3496 -8.3093 -1.5341 24 6 -0.1601 -7.1689 -0.6958 25 6 -0.0025 -2.3746 -0.7770 26 6 -0.2544 -3.3026 -1.9671 27 6 -0.1517 -1.7906 -2.1834 28 1 -0.4850 0.8401 0.0004 29 1 0.2602 -4.7672 -0.5176 30 1 2.8785 -5.9505 0.5757 31 1 2.8445 -8.3755 0.5720 32 1 2.3888 -10.8819 0.9969 33 1 -0.8162 -12.7804 -1.0848 34 1 -1.5306 -10.6185 -2.0125 35 1 -0.8891 -7.1921 0.1142 36 1 -0.3066 -6.2621 -1.2825 37 1 -0.8239 -2.2187 -0.0776 38 1 0.5771 -3.9182 -2.3100 39 1 -1.2416 -3.7569 -2.0509 40 1 -1.0713 -1.2510 -2.4093 41 1 0.7475 -1.4109 -2.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = 26.428443 kcal Electronic energy + Delta-G solvation = -26519.264860 eV Core-core repulsion = 22585.625806 eV Total energy + Delta-G solvation = -3933.639054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.87730 -39.20557 -38.04764 -36.48071 -36.32479 -35.48027 -33.40144 -32.29854 -31.30054 -30.45210 -29.55373 -26.35295 -25.83370 -24.06457 -22.91690 -22.26496 -21.61461 -21.03894 -18.88299 -18.57968 -17.51777 -17.30597 -16.95880 -16.52152 -15.72348 -15.32289 -15.24795 -14.99782 -14.43603 -14.38129 -14.05281 -13.74818 -13.63358 -13.50884 -13.14661 -13.03243 -12.72439 -12.43906 -12.16499 -11.93251 -11.63818 -11.56955 -11.32588 -11.22814 -11.09228 -10.89915 -10.63031 -10.55881 -10.50666 -10.36007 -9.99338 -9.53349 -9.43678 -9.03246 -8.60349 -8.46916 -7.96843 -7.49970 -6.54174 -3.95453 0.19811 0.93337 1.43056 1.89527 2.68870 3.10053 3.12919 3.16587 3.24983 3.48750 3.95070 4.33322 4.39752 4.44512 4.51961 4.53705 4.70137 4.80079 4.96532 5.02847 5.08643 5.13388 5.31291 5.49172 5.54905 5.62088 5.67336 5.73674 5.76834 5.88769 5.92055 5.94970 6.11181 6.16507 6.22757 6.32402 6.52121 6.61436 6.79404 6.85568 6.90086 7.09453 7.14923 7.32448 7.91610 8.30676 9.01033 9.20736 9.86553 10.45829 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.002105 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.413123 B =13296.023055 C =14097.443962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.034 3.966 3 Si 0.930 3.070 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.291 4.291 8 H 0.106 0.894 9 N -0.398 5.398 10 C 0.450 3.550 11 O -0.602 6.602 12 C -0.144 4.144 13 C -0.104 4.104 14 C -0.099 4.099 15 C -0.118 4.118 16 C -0.100 4.100 17 C -0.071 4.071 18 C -0.061 4.061 19 Cl -0.074 7.074 20 C -0.084 4.084 21 C -0.130 4.130 22 C 0.129 3.871 23 O -0.306 6.306 24 C 0.095 3.905 25 C 0.130 3.870 26 C -0.230 4.230 27 C -0.144 4.144 28 H 0.273 0.727 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -18.271 -3.190 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.173 4.173 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.419 4.419 8 H 0.124 0.876 9 N -0.113 5.113 10 C 0.245 3.755 11 O -0.491 6.491 12 C -0.165 4.165 13 C -0.126 4.126 14 C -0.100 4.100 15 C -0.137 4.137 16 C -0.101 4.101 17 C -0.089 4.089 18 C -0.088 4.088 19 Cl -0.046 7.046 20 C -0.103 4.103 21 C -0.149 4.149 22 C 0.083 3.917 23 O -0.220 6.220 24 C 0.021 3.979 25 C 0.025 3.975 26 C -0.268 4.268 27 C -0.182 4.182 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.093 0.907 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.806 -18.070 -3.051 18.945 hybrid contribution 0.413 0.906 0.175 1.010 sum -4.394 -17.164 -2.875 17.949 Atomic orbital electron populations 1.69859 1.06069 1.28152 1.45013 1.25426 0.95611 1.00021 0.96201 0.85912 0.79052 0.79981 0.79418 1.19653 1.20673 1.19515 1.19801 0.93752 0.82335 1.46029 0.87636 1.43330 1.13225 1.05977 1.48741 1.16577 0.88345 0.83994 0.86567 1.90685 1.23474 1.87164 1.47740 1.22818 1.00418 0.93932 0.99320 1.20850 1.00473 0.90081 1.01224 1.20491 0.96416 0.94291 0.98759 1.22074 0.99956 0.89396 1.02279 1.19113 0.95994 0.94190 1.00849 1.20965 0.99484 0.89523 0.98972 1.20719 0.99164 0.86912 1.02016 1.98363 1.91284 1.29233 1.85684 1.20904 0.95387 0.97938 0.96078 1.20465 1.00885 0.89931 1.03614 1.19160 0.91967 0.86393 0.94165 1.85986 1.80450 1.12965 1.42574 1.21972 0.93881 0.86958 0.95064 1.21286 0.87117 1.00102 0.88981 1.23734 1.02007 0.94867 1.06235 1.22784 1.02293 0.92731 1.00347 0.91639 0.85680 0.85099 0.84374 0.84296 0.84418 0.84053 0.90683 0.85806 0.86472 0.89259 0.88968 0.89372 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.69 10.08 55.51 0.56 -20.13 16 2 C 0.03 0.83 5.06 -17.44 -0.09 0.75 16 3 Si 0.93 19.54 29.56 -169.99 -5.03 14.52 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.29 -7.69 9.21 -15.07 -0.14 -7.83 16 8 H 0.11 2.94 7.36 -52.49 -0.39 2.56 16 9 N -0.40 -9.75 2.93 -111.04 -0.32 -10.07 16 10 C 0.45 10.88 7.31 -15.10 -0.11 10.77 16 11 O -0.60 -16.69 15.80 5.05 0.08 -16.61 16 12 C -0.14 -2.70 7.30 -39.23 -0.29 -2.99 16 13 C -0.10 -1.77 9.11 -39.38 -0.36 -2.12 16 14 C -0.10 -1.40 5.80 -104.38 -0.61 -2.01 16 15 C -0.12 -1.53 9.79 -36.80 -0.36 -1.89 16 16 C -0.10 -1.23 5.81 -104.97 -0.61 -1.84 16 17 C -0.07 -0.75 9.64 -39.12 -0.38 -1.13 16 18 C -0.06 -0.61 6.32 -39.49 -0.25 -0.86 16 19 Cl -0.07 -0.68 28.94 -51.86 -1.50 -2.18 16 20 C -0.08 -0.76 9.80 -39.40 -0.39 -1.15 16 21 C -0.13 -1.30 10.01 -39.54 -0.40 -1.69 16 22 C 0.13 1.58 6.46 -38.70 -0.25 1.33 16 23 O -0.31 -4.01 10.40 -18.55 -0.19 -4.20 16 24 C 0.10 1.20 6.42 36.00 0.23 1.43 16 25 C 0.13 2.71 3.56 -67.92 -0.24 2.47 16 26 C -0.23 -3.81 7.84 -26.69 -0.21 -4.02 16 27 C -0.14 -2.73 8.96 -26.69 -0.24 -2.97 16 28 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 29 H 0.13 2.02 3.15 -52.49 -0.17 1.86 16 30 H 0.13 2.38 7.47 -52.48 -0.39 1.99 16 31 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 1.47 6.21 -51.93 -0.32 1.14 16 37 H 0.12 2.54 7.66 -51.93 -0.40 2.14 16 38 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -29.06 359.49 -10.21 -39.27 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.55 Total: 7.74 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -4.68 Total: -13.76 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.23 Total: -30.20 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.11 Total: -20.81 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.06 -10.21 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.702 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds