Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47529 * 2 1 4 4 C 1.50703 * 109.46819 * 239.99884 * 2 1 3 5 5 O 1.21296 * 119.99929 * 239.99864 * 4 2 1 6 6 N 1.34777 * 120.00127 * 60.00432 * 4 2 1 7 7 C 1.40143 * 120.00208 * 185.01284 * 6 4 2 8 8 C 1.38651 * 120.09658 * 21.37179 * 7 6 4 9 9 C 1.38250 * 120.00323 * 180.02562 * 8 7 6 10 10 C 1.38295 * 120.21559 * 359.97438 * 9 8 7 11 11 C 1.38206 * 120.19429 * 359.71992 * 10 9 8 12 12 C 1.38777 * 119.98987 * 0.56472 * 11 10 9 13 13 S 1.76202 * 120.10582 * 179.71795 * 12 11 10 14 14 C 1.81397 * 102.99797 * 356.15191 * 13 12 11 15 15 H 1.09003 * 109.47313 * 53.70408 * 14 13 12 16 16 C 1.53000 * 109.47334 * 173.70178 * 14 13 12 17 17 C 1.50700 * 109.47497 * 293.70681 * 14 13 12 18 18 H 1.08000 * 119.99821 * 359.97438 * 17 14 13 19 19 C 1.37879 * 120.00100 * 180.02562 * 17 14 13 20 20 N 1.31505 * 119.99976 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99726 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47468 * 59.99600 * 21 19 17 23 23 H 1.48498 * 109.47040 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47040 * 299.99739 * 21 19 17 25 25 N 1.46498 * 109.47174 * 120.00361 * 2 1 3 26 26 C 1.36885 * 126.39655 * 239.71255 * 25 2 1 27 27 C 1.34671 * 106.81919 * 179.84096 * 26 25 2 28 28 N 1.34124 * 108.01505 * 0.42189 * 27 26 25 29 29 C 1.30499 * 109.26475 * 359.73154 * 28 27 26 30 30 H 1.08999 * 109.47371 * 59.99822 * 1 2 3 31 31 H 1.08997 * 109.47529 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46717 * 300.00281 * 1 2 3 33 33 H 0.97001 * 119.99567 * 5.01038 * 6 4 2 34 34 H 1.08000 * 119.99542 * 359.97438 * 8 7 6 35 35 H 1.08006 * 119.88823 * 179.97438 * 9 8 7 36 36 H 1.07995 * 119.90239 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.00229 * 180.27567 * 11 10 9 38 38 H 1.08998 * 109.47564 * 185.84908 * 16 14 13 39 39 H 1.08994 * 109.47383 * 305.85450 * 16 14 13 40 40 H 1.09000 * 109.46639 * 65.85204 * 16 14 13 41 41 H 0.96998 * 119.99894 * 180.02562 * 20 19 17 42 42 H 1.08000 * 126.58952 * 359.97438 * 26 25 2 43 43 H 1.07993 * 125.98884 * 180.11901 * 27 26 25 44 44 H 1.07992 * 125.65193 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.7296 -1.6967 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.0847 -0.9684 -3.5969 8 6 2.3822 -2.3193 -3.5019 9 6 2.7555 -3.0260 -4.6299 10 6 2.8330 -2.3902 -5.8556 11 6 2.5323 -1.0454 -5.9613 12 6 2.1624 -0.3266 -4.8333 13 16 1.7855 1.3897 -4.9632 14 6 2.1365 1.7538 -6.7053 15 1 1.5850 1.0600 -7.3398 16 6 1.7069 3.1874 -7.0234 17 6 3.6138 1.6034 -6.9622 18 1 4.2755 1.3177 -6.1578 19 6 4.1209 1.8314 -8.2239 20 7 3.3153 2.1796 -9.2032 21 14 5.9520 1.6442 -8.5424 22 1 6.3683 0.2525 -8.2345 23 1 6.2394 1.9423 -9.9685 24 1 6.7040 2.5886 -7.6775 25 7 2.0183 -0.6907 1.1961 26 6 2.8130 -0.1570 2.1746 27 6 3.0185 -1.1296 3.0832 28 7 2.3747 -2.2298 2.6660 29 6 1.7734 -1.9744 1.5363 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.2107 0.5787 -2.5449 34 1 2.3232 -2.8192 -2.5464 35 1 2.9872 -4.0782 -4.5537 36 1 3.1247 -2.9473 -6.7336 37 1 2.5896 -0.5530 -6.9208 38 1 1.8209 3.3724 -8.0915 39 1 0.6635 3.3253 -6.7400 40 1 2.3304 3.8858 -6.4651 41 1 3.6720 2.3397 -10.0910 42 1 3.1990 0.8509 2.2120 43 1 3.6034 -1.0407 3.9866 44 1 1.1788 -2.6739 0.9676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066855919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = 61.148237 kcal Electronic energy + Delta-G solvation = -27301.185550 eV Core-core repulsion = 23539.221611 eV Total energy + Delta-G solvation = -3761.963938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32568 -40.51517 -38.20711 -35.20337 -34.91083 -34.19879 -30.91930 -30.75059 -30.29690 -29.47585 -28.93022 -25.51476 -25.28782 -23.12469 -22.57349 -21.73315 -21.47572 -20.91012 -20.08727 -18.37322 -17.23856 -17.11101 -16.61236 -16.40928 -15.75161 -15.28033 -15.26432 -14.56147 -14.49095 -14.19975 -14.10055 -13.96248 -13.59544 -13.55154 -13.35293 -13.04984 -13.03789 -12.74379 -12.65843 -12.22205 -11.93790 -11.67736 -11.47406 -11.07280 -11.02489 -10.64787 -10.55070 -10.48343 -10.31510 -10.08596 -10.04780 -9.53979 -9.51385 -9.16649 -9.08967 -8.61249 -8.60319 -7.97699 -6.69216 -6.24668 -4.39026 1.44402 1.78469 1.83843 2.31436 2.40139 2.45579 2.96228 3.13370 3.18625 3.23062 3.26299 3.46710 4.07860 4.17068 4.23843 4.28268 4.33169 4.63780 4.65368 5.01922 5.03644 5.05333 5.31149 5.34149 5.43730 5.47516 5.55663 5.61866 5.77433 5.89927 6.09799 6.25931 6.44056 6.49038 6.58153 6.60415 6.62137 6.69223 6.79616 6.96578 7.00181 7.17695 7.30070 7.36725 7.46851 7.67661 7.84248 7.88231 7.98368 8.62104 9.26671 10.74993 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.002824 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.596217 B = 9913.046196 C =10252.456552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.117 3.883 3 H 0.130 0.870 4 C 0.500 3.500 5 O -0.502 6.502 6 N -0.648 5.648 7 C 0.141 3.859 8 C -0.128 4.128 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.092 4.092 12 C -0.077 4.077 13 S -0.203 6.203 14 C 0.103 3.897 15 H 0.052 0.948 16 C -0.125 4.125 17 C -0.523 4.523 18 H 0.066 0.934 19 C 0.072 3.928 20 N -0.886 5.886 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.274 1.274 25 N -0.444 5.444 26 C -0.058 4.058 27 C -0.028 4.028 28 N -0.499 5.499 29 C 0.212 3.788 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.414 0.586 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.099 0.901 39 H 0.020 0.980 40 H 0.040 0.960 41 H 0.267 0.733 42 H 0.173 0.827 43 H 0.169 0.831 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 -2.744 14.449 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.147 0.853 4 C 0.285 3.715 5 O -0.377 6.377 6 N -0.292 5.292 7 C 0.041 3.959 8 C -0.149 4.149 9 C -0.142 4.142 10 C -0.143 4.143 11 C -0.116 4.116 12 C -0.192 4.192 13 S 0.043 5.957 14 C -0.025 4.025 15 H 0.070 0.930 16 C -0.185 4.185 17 C -0.562 4.562 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.523 5.523 21 Si 0.724 3.276 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.200 1.200 25 N -0.128 5.128 26 C -0.190 4.190 27 C -0.175 4.175 28 N -0.217 5.217 29 C -0.071 4.071 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.251 0.749 34 H 0.163 0.837 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.172 0.828 38 H 0.117 0.883 39 H 0.039 0.961 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.191 0.809 43 H 0.186 0.814 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.011 -3.153 15.492 17.295 hybrid contribution 1.457 0.417 -1.841 2.385 sum -5.555 -2.736 13.651 14.989 Atomic orbital electron populations 1.22167 0.90392 1.04577 1.04710 1.21282 0.97209 0.97903 0.82688 0.85250 1.20568 0.80841 0.85681 0.84450 1.90729 1.35468 1.25578 1.85894 1.43348 1.55372 1.26491 1.04016 1.17233 1.03282 0.91090 0.84261 1.21271 1.01739 0.91727 1.00165 1.20968 1.01291 0.99538 0.92388 1.21107 1.00936 0.94749 0.97496 1.21581 0.97132 0.93889 0.98985 1.21352 1.05614 0.97739 0.94518 1.84356 1.82194 1.03469 1.25685 1.21089 1.00113 0.97711 0.83542 0.93008 1.21651 0.96529 0.95671 1.04633 1.21190 0.90806 1.48424 0.95790 0.91535 1.24936 0.98273 0.94260 0.95751 1.69843 1.34995 1.45728 1.01741 0.86544 0.84680 0.79099 0.77261 1.19876 1.21053 1.19973 1.45170 1.38638 1.11769 1.17207 1.22706 1.02427 1.01600 0.92261 1.22258 1.04408 0.89534 1.01328 1.70324 1.12767 1.27670 1.10958 1.24800 1.02712 0.84669 0.94874 0.89417 0.90740 0.90030 0.74914 0.83702 0.86322 0.86225 0.82843 0.88261 0.96078 0.94088 0.92346 0.80937 0.81422 0.78523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.15 37.16 0.34 -0.64 16 2 C 0.12 1.01 3.39 -69.08 -0.23 0.78 16 3 H 0.13 0.85 8.08 -51.93 -0.42 0.43 16 4 C 0.50 6.25 6.96 -10.98 -0.08 6.17 16 5 O -0.50 -8.02 12.45 5.54 0.07 -7.96 16 6 N -0.65 -8.59 5.07 -9.70 -0.05 -8.64 16 7 C 0.14 2.36 6.49 -83.43 -0.54 1.82 16 8 C -0.13 -2.09 8.77 -39.42 -0.35 -2.44 16 9 C -0.12 -1.88 10.04 -39.56 -0.40 -2.28 16 10 C -0.12 -2.06 10.04 -39.57 -0.40 -2.45 16 11 C -0.09 -1.78 8.76 -39.39 -0.34 -2.12 16 12 C -0.08 -1.45 6.05 -38.91 -0.24 -1.68 16 13 S -0.20 -3.86 19.92 -107.50 -2.14 -6.00 16 14 C 0.10 2.31 2.02 -27.88 -0.06 2.25 16 15 H 0.05 1.25 7.19 -51.92 -0.37 0.87 16 16 C -0.13 -2.71 8.89 37.16 0.33 -2.38 16 17 C -0.52 -12.98 6.59 -34.44 -0.23 -13.21 16 18 H 0.07 1.73 7.71 -52.49 -0.40 1.32 16 19 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 20 N -0.89 -22.85 11.38 55.43 0.63 -22.22 16 21 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 N -0.44 -4.71 2.40 -112.70 -0.27 -4.98 16 26 C -0.06 -0.59 11.54 -16.56 -0.19 -0.78 16 27 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 28 N -0.50 -6.92 11.25 -14.67 -0.17 -7.08 16 29 C 0.21 2.58 10.75 -90.37 -0.97 1.61 16 30 H 0.09 0.44 7.68 -51.93 -0.40 0.04 16 31 H 0.07 0.48 7.95 -51.93 -0.41 0.06 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.41 4.72 7.13 -40.82 -0.29 4.43 16 34 H 0.15 2.34 5.52 -52.49 -0.29 2.05 16 35 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 36 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.15 3.31 4.99 -52.48 -0.26 3.05 16 38 H 0.10 2.34 6.25 -51.93 -0.32 2.02 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.20 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -30.20 375.46 -10.64 -40.84 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.69 Total: 9.43 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -3.65 Total: -14.16 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.15 Total: -42.93 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.07 Total: -7.96 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.14 Total: -6.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.20 -10.64 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066855919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.988 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds