Wall clock time and date at job start Tue Mar 31 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47555 * 2 1 4 4 C 1.50704 * 109.47546 * 239.99597 * 2 1 3 5 5 H 1.07992 * 120.00315 * 240.00421 * 4 2 1 6 6 C 1.37875 * 119.99513 * 59.99955 * 4 2 1 7 7 N 1.31514 * 120.00062 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99753 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47025 * 90.00338 * 8 6 4 10 10 H 1.48500 * 109.46975 * 210.00243 * 8 6 4 11 11 H 1.48501 * 109.47228 * 329.99995 * 8 6 4 12 12 S 1.81408 * 109.47168 * 119.99722 * 2 1 3 13 13 C 1.76204 * 102.99889 * 291.82309 * 12 2 1 14 14 C 1.38782 * 120.10413 * 354.86221 * 13 12 2 15 15 C 1.38199 * 119.98729 * 180.02562 * 14 13 12 16 16 C 1.38294 * 120.19886 * 0.02562 * 15 14 13 17 17 C 1.38250 * 120.21446 * 359.97438 * 16 15 14 18 18 C 1.38654 * 120.00513 * 359.97438 * 17 16 15 19 19 N 1.40136 * 120.10056 * 179.97438 * 18 17 16 20 20 C 1.34782 * 120.00159 * 19.31172 * 19 18 17 21 21 O 1.21296 * 119.99679 * 5.66573 * 20 19 18 22 22 C 1.50697 * 120.00097 * 185.66057 * 20 19 18 23 23 H 1.08990 * 109.47485 * 300.00344 * 22 20 19 24 24 C 1.53007 * 109.46950 * 60.00621 * 22 20 19 25 25 N 1.46500 * 109.47046 * 180.02562 * 22 20 19 26 26 C 1.36883 * 126.39664 * 119.71451 * 25 22 20 27 27 C 1.34671 * 106.81874 * 179.84323 * 26 25 22 28 28 N 1.34130 * 108.01986 * 0.42446 * 27 26 25 29 29 C 1.30501 * 109.25478 * 359.73163 * 28 27 26 30 30 H 1.09001 * 109.47535 * 293.62996 * 1 2 3 31 31 H 1.09004 * 109.46782 * 53.63058 * 1 2 3 32 32 H 1.09007 * 109.47139 * 173.62650 * 1 2 3 33 33 H 0.97003 * 119.99630 * 179.97438 * 7 6 4 34 34 H 1.08007 * 120.00768 * 0.02562 * 14 13 12 35 35 H 1.07999 * 119.90134 * 180.02562 * 15 14 13 36 36 H 1.08006 * 119.89367 * 180.02562 * 16 15 14 37 37 H 1.07997 * 119.99724 * 179.72703 * 17 16 15 38 38 H 0.96996 * 120.00114 * 199.32074 * 19 18 17 39 39 H 1.09002 * 109.46900 * 300.00086 * 24 22 20 40 40 H 1.09001 * 109.46802 * 59.99543 * 24 22 20 41 41 H 1.08997 * 109.46954 * 179.97438 * 24 22 20 42 42 H 1.08000 * 126.58953 * 359.97438 * 26 25 22 43 43 H 1.08000 * 125.99268 * 180.11833 * 27 26 25 44 44 H 1.08002 * 125.65026 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1618 -4.4117 10 1 2.4868 -0.1415 -5.1121 11 1 3.6295 -1.7585 -3.7120 12 16 2.1347 -0.8551 1.4812 13 6 1.6650 0.2321 2.7860 14 6 1.0910 1.4616 2.4949 15 6 0.7240 2.3126 3.5201 16 6 0.9275 1.9433 4.8372 17 6 1.4988 0.7205 5.1366 18 6 1.8692 -0.1405 4.1148 19 7 2.4489 -1.3803 4.4160 20 6 2.3012 -1.9125 5.6455 21 8 1.5828 -1.3703 6.4587 22 6 3.0284 -3.1810 6.0098 23 1 2.7210 -3.9820 5.3376 24 6 4.5369 -2.9588 5.8821 25 7 2.7040 -3.5508 7.3898 26 6 2.1035 -4.7105 7.8001 27 6 1.9979 -4.6412 9.1409 28 7 2.5112 -3.4672 9.5375 29 6 2.9360 -2.8087 8.4940 30 1 -0.3634 0.4119 0.9415 31 1 -0.3633 0.6094 -0.8275 32 1 -0.3634 -1.0214 -0.1141 33 1 0.7096 1.1616 -3.4844 34 1 0.9310 1.7534 1.4673 35 1 0.2770 3.2689 3.2920 36 1 0.6385 2.6121 5.6345 37 1 1.6601 0.4375 6.1662 38 1 2.9565 -1.8555 3.7397 39 1 4.7779 -2.6838 4.8553 40 1 4.8442 -2.1577 6.5545 41 1 5.0629 -3.8762 6.1461 42 1 1.7790 -5.5253 7.1700 43 1 1.5701 -5.3963 9.7837 44 1 3.3965 -1.8319 8.5106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066855920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:56 Heat of formation + Delta-G solvation = 62.778424 kcal Electronic energy + Delta-G solvation = -27086.917156 eV Core-core repulsion = 23325.023908 eV Total energy + Delta-G solvation = -3761.893248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.35793 -40.61058 -38.35667 -35.24700 -35.01214 -34.21592 -31.24385 -30.95088 -30.04257 -29.53336 -29.01611 -25.49047 -25.34052 -23.19741 -22.68476 -21.67354 -21.49785 -21.13909 -20.16792 -18.56541 -17.45830 -17.30906 -16.61107 -16.26551 -15.81555 -15.34345 -15.28484 -14.62505 -14.58194 -14.26333 -14.20818 -13.98902 -13.67289 -13.60645 -13.41525 -13.21539 -12.84890 -12.78389 -12.63608 -12.28034 -12.09868 -11.85805 -11.49048 -11.20719 -11.11587 -10.76719 -10.65634 -10.52728 -10.25485 -10.11252 -10.08987 -9.61912 -9.51630 -9.25338 -9.06266 -8.64844 -8.62986 -8.11830 -6.70991 -6.33031 -4.42453 1.31731 1.59586 1.80455 2.23558 2.30492 2.37557 2.90628 3.10640 3.14215 3.21433 3.24198 3.45509 3.98943 4.04718 4.20061 4.25970 4.28748 4.61220 4.62751 4.99960 5.02296 5.04419 5.17720 5.25419 5.29373 5.45388 5.48172 5.53235 5.64626 5.70903 6.07008 6.07696 6.30543 6.44787 6.46615 6.57444 6.58947 6.61686 6.65633 6.77578 6.95336 7.17164 7.21717 7.22364 7.48799 7.64209 7.76094 7.86997 7.95699 8.56105 9.22429 10.73436 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.002691 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.407156 B =10401.422404 C =11688.535036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.514 4.514 5 H 0.067 0.933 6 C 0.072 3.928 7 N -0.885 5.885 8 Si 0.907 3.093 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.271 1.271 12 S -0.181 6.181 13 C -0.091 4.091 14 C -0.113 4.113 15 C -0.118 4.118 16 C -0.121 4.121 17 C -0.125 4.125 18 C 0.145 3.855 19 N -0.648 5.648 20 C 0.501 3.499 21 O -0.502 6.502 22 C 0.117 3.883 23 H 0.131 0.869 24 C -0.161 4.161 25 N -0.445 5.445 26 C -0.058 4.058 27 C -0.028 4.028 28 N -0.499 5.499 29 C 0.212 3.788 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.150 0.850 38 H 0.416 0.584 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.174 0.826 43 H 0.169 0.831 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -5.457 14.650 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.070 0.930 4 C -0.554 4.554 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.066 5.934 13 C -0.206 4.206 14 C -0.137 4.137 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.146 4.146 18 C 0.045 3.955 19 N -0.292 5.292 20 C 0.286 3.714 21 O -0.377 6.377 22 C 0.009 3.991 23 H 0.148 0.852 24 C -0.219 4.219 25 N -0.128 5.128 26 C -0.190 4.190 27 C -0.175 4.175 28 N -0.217 5.217 29 C -0.071 4.071 30 H 0.040 0.960 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.157 0.843 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.253 0.747 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.191 0.809 43 H 0.186 0.814 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.696 -5.829 15.727 17.418 hybrid contribution -0.365 0.302 -2.308 2.356 sum 4.332 -5.527 13.419 15.145 Atomic orbital electron populations 1.22142 0.96170 1.01658 1.00222 1.21090 0.95622 0.97200 0.88287 0.92985 1.20592 1.32926 1.13337 0.88543 0.91483 1.24887 0.94576 0.94899 0.98888 1.69869 1.35658 1.22344 1.24294 0.86343 0.79382 0.79299 0.81602 1.20321 1.20881 1.19583 1.84900 1.73823 1.33060 1.01594 1.21699 1.04138 0.99519 0.95251 1.21325 0.99076 0.92678 1.00670 1.21073 1.00617 0.99533 0.92605 1.20977 1.00656 0.96299 0.96339 1.21430 1.00377 0.93176 0.99614 1.17213 1.00802 0.85577 0.91926 1.43377 1.52512 1.19829 1.13507 1.20593 0.82151 0.86258 0.82405 1.90707 1.36698 1.60890 1.49394 1.21283 0.97453 0.97286 0.83050 0.85179 1.22178 0.90768 1.04383 1.04588 1.45172 1.45536 1.15737 1.06365 1.22709 1.06758 0.92133 0.97374 1.22265 1.05655 0.96997 0.92606 1.70332 1.16100 1.06124 1.29122 1.24807 1.03130 0.98845 0.80309 0.95991 0.88967 0.93923 0.92310 0.84268 0.86082 0.86095 0.83242 0.74664 0.89325 0.90736 0.89960 0.80919 0.81406 0.78519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.33 37.16 0.31 -2.88 16 2 C 0.11 2.42 1.98 -27.88 -0.06 2.36 16 3 H 0.05 1.28 7.01 -51.92 -0.36 0.92 16 4 C -0.51 -13.01 8.58 -34.44 -0.30 -13.31 16 5 H 0.07 1.70 7.71 -52.49 -0.40 1.29 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -23.13 11.39 55.43 0.63 -22.50 16 8 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 S -0.18 -3.48 19.88 -107.50 -2.14 -5.62 16 13 C -0.09 -1.61 5.98 -38.90 -0.23 -1.84 16 14 C -0.11 -1.98 7.95 -39.39 -0.31 -2.29 16 15 C -0.12 -1.76 10.04 -39.58 -0.40 -2.16 16 16 C -0.12 -1.72 10.04 -39.56 -0.40 -2.12 16 17 C -0.12 -1.90 8.79 -39.42 -0.35 -2.25 16 18 C 0.15 2.30 6.52 -83.43 -0.54 1.75 16 19 N -0.65 -8.26 5.09 -9.71 -0.05 -8.31 16 20 C 0.50 5.96 6.97 -10.98 -0.08 5.89 16 21 O -0.50 -7.60 12.37 5.54 0.07 -7.53 16 22 C 0.12 0.98 3.39 -69.08 -0.23 0.74 16 23 H 0.13 0.81 8.08 -51.93 -0.42 0.39 16 24 C -0.16 -0.98 9.15 37.16 0.34 -0.64 16 25 N -0.44 -4.55 2.40 -112.70 -0.27 -4.82 16 26 C -0.06 -0.57 11.54 -16.56 -0.19 -0.76 16 27 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 28 N -0.50 -6.73 11.25 -14.66 -0.16 -6.90 16 29 C 0.21 2.50 10.76 -90.37 -0.97 1.52 16 30 H 0.02 0.44 5.83 -51.93 -0.30 0.14 16 31 H 0.09 2.24 6.27 -51.93 -0.33 1.91 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 34 H 0.14 2.61 4.90 -52.48 -0.26 2.36 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.15 2.27 5.41 -52.49 -0.28 1.98 16 38 H 0.42 4.70 7.10 -40.82 -0.29 4.41 16 39 H 0.09 0.46 7.70 -51.93 -0.40 0.06 16 40 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -30.53 373.25 -10.58 -41.11 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.55 Total: 8.93 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.71 Total: -14.75 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.15 Total: -42.53 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.07 Total: -7.53 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.14 Total: -5.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.53 -10.58 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066855920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.890 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds