Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46988 * 2 1 4 4 C 1.50702 * 109.47239 * 120.00073 * 2 1 3 5 5 H 1.07997 * 120.00009 * 119.99551 * 4 2 1 6 6 C 1.37881 * 119.99734 * 300.00232 * 4 2 1 7 7 N 1.31518 * 120.00228 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99836 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47228 * 120.00285 * 8 6 4 11 11 H 1.48504 * 109.46782 * 240.00196 * 8 6 4 12 12 S 1.81401 * 109.47144 * 240.00184 * 2 1 3 13 13 C 1.76202 * 102.99714 * 169.86735 * 12 2 1 14 14 C 1.38789 * 120.10604 * 5.08037 * 13 12 2 15 15 C 1.38201 * 119.98662 * 180.28248 * 14 13 12 16 16 C 1.38301 * 120.19995 * 359.73744 * 15 14 13 17 17 C 1.38252 * 120.21054 * 359.97438 * 16 15 14 18 18 C 1.38654 * 120.00756 * 359.97438 * 17 16 15 19 19 N 1.40142 * 120.09578 * 180.02562 * 18 17 16 20 20 C 1.34772 * 120.00482 * 335.20218 * 19 18 17 21 21 O 1.21301 * 119.99710 * 354.41964 * 20 19 18 22 22 C 1.50692 * 120.00260 * 174.42073 * 20 19 18 23 23 H 1.09004 * 109.47210 * 60.00084 * 22 20 19 24 24 C 1.52998 * 109.47425 * 299.99689 * 22 20 19 25 25 N 1.46503 * 109.47226 * 179.97438 * 22 20 19 26 26 C 1.36883 * 126.39875 * 239.99802 * 25 22 20 27 27 C 1.34670 * 106.81586 * 179.97438 * 26 25 22 28 28 N 1.34126 * 108.02253 * 0.02562 * 27 26 25 29 29 C 1.30502 * 109.25735 * 359.72634 * 28 27 26 30 30 H 1.09000 * 109.46421 * 65.04767 * 1 2 3 31 31 H 1.09000 * 109.46996 * 185.04341 * 1 2 3 32 32 H 1.08999 * 109.47080 * 305.04543 * 1 2 3 33 33 H 0.96997 * 120.00274 * 180.02562 * 7 6 4 34 34 H 1.07995 * 120.00549 * 0.02562 * 14 13 12 35 35 H 1.07996 * 119.90033 * 179.73057 * 15 14 13 36 36 H 1.08002 * 119.89377 * 180.02562 * 16 15 14 37 37 H 1.07994 * 119.99530 * 180.02562 * 17 16 15 38 38 H 0.97007 * 119.99414 * 155.19775 * 19 18 17 39 39 H 1.09005 * 109.46994 * 60.00105 * 24 22 20 40 40 H 1.08994 * 109.47623 * 179.97438 * 24 22 20 41 41 H 1.08996 * 109.47034 * 300.00225 * 24 22 20 42 42 H 1.07996 * 126.59391 * 0.04163 * 26 25 22 43 43 H 1.08002 * 125.99162 * 179.97438 * 27 26 25 44 44 H 1.07997 * 125.65654 * 180.29596 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.1455 -2.2876 3.6038 10 1 3.1465 -0.1874 4.8166 11 1 1.1660 -1.5867 4.8160 12 16 2.1347 -0.8551 -1.4812 13 6 3.8603 -0.4986 -1.4678 14 6 4.4209 0.1891 -0.4006 15 6 5.7735 0.4725 -0.3954 16 6 6.5730 0.0680 -1.4489 17 6 6.0243 -0.6228 -2.5134 18 6 4.6685 -0.9126 -2.5270 19 7 4.1104 -1.6132 -3.6049 20 6 4.7068 -1.5777 -4.8130 21 8 5.6678 -0.8601 -4.9940 22 6 4.1797 -2.4295 -5.9388 23 1 3.1453 -2.1563 -6.1476 24 6 4.2464 -3.9043 -5.5369 25 7 4.9932 -2.2124 -7.1376 26 6 4.5515 -1.7416 -8.3447 27 6 5.6219 -1.6965 -9.1607 28 7 6.6880 -2.1285 -8.4709 29 6 6.3200 -2.4341 -7.2566 30 1 -0.3632 0.4336 -0.9318 31 1 -0.3633 -1.0237 0.0903 32 1 -0.3633 0.5901 0.8413 33 1 0.7095 1.1618 3.4844 34 1 3.7994 0.5063 0.4237 35 1 6.2075 1.0115 0.4337 36 1 7.6296 0.2917 -1.4396 37 1 6.6520 -0.9373 -3.3340 38 1 3.2949 -2.1237 -3.4813 39 1 3.6408 -4.0656 -4.6450 40 1 3.8648 -4.5204 -6.3510 41 1 5.2807 -4.1775 -5.3281 42 1 3.5394 -1.4595 -8.5944 43 1 5.6218 -1.3706 -10.1903 44 1 6.9687 -2.8048 -6.4768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066855921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = 59.162830 kcal Electronic energy + Delta-G solvation = -27241.178119 eV Core-core repulsion = 23479.128087 eV Total energy + Delta-G solvation = -3762.050032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33039 -40.50011 -38.21869 -35.19603 -34.91254 -34.21115 -30.91994 -30.75779 -30.30506 -29.48207 -28.93289 -25.53695 -25.29464 -23.11479 -22.57891 -21.72472 -21.48204 -20.91320 -20.08555 -18.38091 -17.22799 -17.13272 -16.62581 -16.39713 -15.74877 -15.30294 -15.26200 -14.57529 -14.49384 -14.19108 -14.10295 -13.96790 -13.61189 -13.55137 -13.31967 -13.16265 -12.97170 -12.75066 -12.62638 -12.21924 -11.93755 -11.71346 -11.46839 -11.10007 -10.99588 -10.65579 -10.55298 -10.48444 -10.30431 -10.09345 -10.05531 -9.59229 -9.54608 -9.18754 -9.04098 -8.64507 -8.61083 -7.99545 -6.69711 -6.26164 -4.41011 1.44046 1.77347 1.83380 2.31073 2.38668 2.44827 2.96241 3.12755 3.13260 3.22808 3.25961 3.47414 4.08205 4.14653 4.21840 4.28335 4.33021 4.62996 4.65182 4.99474 5.04247 5.06013 5.30201 5.32663 5.43469 5.48428 5.54808 5.60825 5.76610 5.90138 6.09112 6.26017 6.44727 6.49057 6.58498 6.59598 6.62828 6.67977 6.79922 6.95983 6.99751 7.17584 7.29009 7.35745 7.46164 7.66580 7.83992 7.87185 7.97693 8.60712 9.24379 10.73162 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.002714 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.961295 B =10315.463122 C =10982.722504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.100 3.900 3 H 0.052 0.948 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.071 3.929 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.200 6.200 13 C -0.077 4.077 14 C -0.099 4.099 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.122 4.122 18 C 0.141 3.859 19 N -0.649 5.649 20 C 0.500 3.500 21 O -0.503 6.503 22 C 0.117 3.883 23 H 0.130 0.870 24 C -0.161 4.161 25 N -0.444 5.444 26 C -0.059 4.059 27 C -0.028 4.028 28 N -0.499 5.499 29 C 0.213 3.787 30 H 0.020 0.980 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.266 0.734 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.414 0.586 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.173 0.827 43 H 0.168 0.832 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -6.579 -13.900 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.562 4.562 5 H 0.087 0.913 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.046 5.954 13 C -0.192 4.192 14 C -0.122 4.122 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.143 4.143 18 C 0.041 3.959 19 N -0.294 5.294 20 C 0.285 3.715 21 O -0.377 6.377 22 C 0.009 3.991 23 H 0.147 0.853 24 C -0.219 4.219 25 N -0.128 5.128 26 C -0.190 4.190 27 C -0.175 4.175 28 N -0.217 5.217 29 C -0.070 4.070 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.178 0.822 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.251 0.749 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.191 0.809 43 H 0.186 0.814 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.513 -6.720 -14.923 16.977 hybrid contribution -0.365 0.238 2.297 2.338 sum 4.148 -6.482 -12.626 14.787 Atomic orbital electron populations 1.21657 0.95026 1.01221 1.00612 1.21117 0.95941 0.96650 0.88984 0.92981 1.21288 1.32469 1.13178 0.89229 0.91266 1.24978 0.94565 0.94812 0.99036 1.69869 1.35722 1.22409 1.24139 0.86423 0.78834 0.79874 0.82423 1.19428 1.20722 1.20738 1.84394 0.99346 1.71077 1.40564 1.21429 0.97398 1.02972 0.97437 1.21778 0.95810 0.96921 0.97734 1.21122 0.93825 1.00769 0.98456 1.20958 0.99502 0.99768 0.94033 1.21082 0.92595 1.01036 0.99599 1.17206 0.91958 0.99154 0.87619 1.43356 1.28638 1.49530 1.07889 1.20559 0.84513 0.83079 0.83367 1.90763 1.26533 1.38776 1.81673 1.21280 0.96813 0.97298 0.83675 0.85279 1.22169 1.04616 0.91490 1.03605 1.45175 1.09227 1.48960 1.09422 1.22698 1.01476 1.09002 0.85869 1.22261 0.88568 1.06238 1.00465 1.70331 1.30056 1.17817 1.03525 1.24806 0.82425 1.03238 0.96538 0.96061 0.94129 0.88239 0.92425 0.82237 0.86182 0.86309 0.84330 0.74898 0.89378 0.90035 0.90745 0.80946 0.81425 0.78527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.90 37.16 0.33 -2.39 16 2 C 0.10 2.26 2.02 -27.88 -0.06 2.20 16 3 H 0.05 1.27 7.39 -51.92 -0.38 0.89 16 4 C -0.52 -12.70 6.41 -34.44 -0.22 -12.92 16 5 H 0.07 1.73 7.71 -52.49 -0.40 1.33 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -22.68 11.38 55.43 0.63 -22.05 16 8 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 S -0.20 -3.81 19.95 -107.50 -2.14 -5.96 16 13 C -0.08 -1.45 6.11 -38.90 -0.24 -1.68 16 14 C -0.10 -1.91 8.85 -39.39 -0.35 -2.26 16 15 C -0.12 -2.02 10.04 -39.57 -0.40 -2.42 16 16 C -0.12 -1.87 10.04 -39.55 -0.40 -2.27 16 17 C -0.12 -1.97 8.72 -39.42 -0.34 -2.32 16 18 C 0.14 2.34 6.44 -83.43 -0.54 1.80 16 19 N -0.65 -8.54 5.02 -9.71 -0.05 -8.59 16 20 C 0.50 6.17 6.93 -10.99 -0.08 6.09 16 21 O -0.50 -7.95 12.64 5.54 0.07 -7.88 16 22 C 0.12 1.00 3.39 -69.09 -0.23 0.77 16 23 H 0.13 0.82 8.08 -51.93 -0.42 0.40 16 24 C -0.16 -1.00 9.15 37.16 0.34 -0.66 16 25 N -0.44 -4.66 2.40 -112.70 -0.27 -4.93 16 26 C -0.06 -0.58 11.54 -16.56 -0.19 -0.78 16 27 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 28 N -0.50 -6.87 11.25 -14.66 -0.16 -7.04 16 29 C 0.21 2.58 10.75 -90.37 -0.97 1.61 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 2.36 6.22 -51.93 -0.32 2.03 16 33 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.16 3.46 4.79 -52.49 -0.25 3.20 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.14 2.20 5.79 -52.49 -0.30 1.89 16 38 H 0.41 4.73 7.26 -40.82 -0.30 4.44 16 39 H 0.09 0.46 7.70 -51.93 -0.40 0.06 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 42 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.20 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -29.87 375.86 -10.64 -40.51 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.71 Total: 9.76 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -3.65 Total: -14.10 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.15 Total: -42.60 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.88 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -2.14 Total: -5.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.87 -10.64 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066855921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.678 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds