Wall clock time and date at job start Tue Mar 31 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47423 * 2 1 4 4 C 1.50697 * 109.47335 * 239.99800 * 2 1 3 5 5 H 1.08008 * 120.00250 * 240.00450 * 4 2 1 6 6 C 1.37876 * 120.00053 * 59.99578 * 4 2 1 7 7 N 1.31508 * 120.00227 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00029 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47050 * 90.00704 * 8 6 4 10 10 H 1.48504 * 109.47491 * 210.00269 * 8 6 4 11 11 H 1.48501 * 109.47695 * 330.00559 * 8 6 4 12 12 S 1.81399 * 109.47162 * 119.99729 * 2 1 3 13 13 C 1.76199 * 102.99908 * 291.37542 * 12 2 1 14 14 C 1.38787 * 120.10779 * 354.02299 * 13 12 2 15 15 C 1.38193 * 119.99201 * 180.32108 * 14 13 12 16 16 C 1.38301 * 120.19893 * 359.70064 * 15 14 13 17 17 C 1.38255 * 120.21069 * 359.97438 * 16 15 14 18 18 C 1.38649 * 120.00453 * 0.04687 * 17 16 15 19 19 N 1.40145 * 120.09745 * 179.97438 * 18 17 16 20 20 C 1.34783 * 119.99733 * 341.02381 * 19 18 17 21 21 O 1.21288 * 119.99945 * 354.61329 * 20 19 18 22 22 C 1.50703 * 119.99389 * 174.61503 * 20 19 18 23 23 H 1.08992 * 109.47352 * 60.00176 * 22 20 19 24 24 C 1.53007 * 109.47119 * 299.99628 * 22 20 19 25 25 N 1.46499 * 109.46450 * 180.02562 * 22 20 19 26 26 C 1.36880 * 126.39498 * 239.99527 * 25 22 20 27 27 C 1.34673 * 106.81851 * 179.73973 * 26 25 22 28 28 N 1.34131 * 108.02199 * 0.02562 * 27 26 25 29 29 C 1.30500 * 109.25324 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47106 * 62.23346 * 1 2 3 31 31 H 1.08992 * 109.47139 * 182.23162 * 1 2 3 32 32 H 1.08997 * 109.47343 * 302.23438 * 1 2 3 33 33 H 0.96999 * 120.00943 * 179.97438 * 7 6 4 34 34 H 1.08001 * 120.00202 * 0.02562 * 14 13 12 35 35 H 1.07999 * 119.90567 * 179.72492 * 15 14 13 36 36 H 1.08000 * 119.89568 * 179.97438 * 16 15 14 37 37 H 1.07991 * 119.99543 * 180.02562 * 17 16 15 38 38 H 0.97003 * 120.00275 * 161.02685 * 19 18 17 39 39 H 1.08995 * 109.47019 * 300.00747 * 24 22 20 40 40 H 1.08997 * 109.46342 * 60.00587 * 24 22 20 41 41 H 1.09001 * 109.46641 * 180.02562 * 24 22 20 42 42 H 1.08001 * 126.59370 * 359.78028 * 26 25 22 43 43 H 1.07997 * 125.99321 * 180.02562 * 27 26 25 44 44 H 1.07998 * 125.65260 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3214 -1.1205 -4.0078 9 1 1.3427 -2.1619 -4.4118 10 1 2.4866 -0.1416 -5.1123 11 1 3.6293 -1.7586 -3.7121 12 16 2.1346 -0.8550 1.4812 13 6 1.6768 0.2384 2.7847 14 6 1.1255 1.4781 2.4922 15 6 0.7734 2.3365 3.5164 16 6 0.9629 1.9620 4.8342 17 6 1.5052 0.7263 5.1351 18 6 1.8619 -0.1415 4.1143 19 7 2.4122 -1.3943 4.4172 20 6 2.9479 -1.6188 5.6334 21 8 3.0425 -0.7103 6.4315 22 6 3.4294 -2.9985 6.0016 23 1 4.2116 -3.3074 5.3082 24 6 2.2613 -3.9838 5.9246 25 7 3.9640 -2.9813 7.3654 26 6 5.2415 -3.2983 7.7411 27 6 5.3042 -3.1440 9.0775 28 7 4.0978 -2.7443 9.5063 29 6 3.2899 -2.6445 8.4862 30 1 -0.3633 0.4788 -0.9094 31 1 -0.3633 -1.0268 0.0400 32 1 -0.3634 0.5481 0.8692 33 1 0.7094 1.1616 -3.4844 34 1 0.9761 1.7737 1.4643 35 1 0.3487 3.3027 3.2871 36 1 0.6864 2.6369 5.6307 37 1 1.6512 0.4373 6.1653 38 1 2.4077 -2.0998 3.7515 39 1 1.4791 -3.6748 6.6179 40 1 1.8633 -3.9966 4.9100 41 1 2.6096 -4.9816 6.1913 42 1 6.0449 -3.6112 7.0908 43 1 6.1736 -3.3126 9.6958 44 1 2.2538 -2.3432 8.5309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066855922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:06 Heat of formation + Delta-G solvation = 63.227354 kcal Electronic energy + Delta-G solvation = -27077.457118 eV Core-core repulsion = 23315.583336 eV Total energy + Delta-G solvation = -3761.873781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35854 -40.61305 -38.35316 -35.24951 -35.00984 -34.23139 -31.23115 -30.94962 -30.04548 -29.53297 -29.01563 -25.49616 -25.34276 -23.20162 -22.68499 -21.67877 -21.49716 -21.13522 -20.16857 -18.56159 -17.45837 -17.30824 -16.61686 -16.26986 -15.80859 -15.34279 -15.30799 -14.64000 -14.58069 -14.26445 -14.19485 -13.98654 -13.66371 -13.62638 -13.48536 -13.10181 -12.85365 -12.74998 -12.69987 -12.30615 -12.04384 -11.86743 -11.57372 -11.13740 -11.12903 -10.73837 -10.63227 -10.56384 -10.26744 -10.11334 -10.08000 -9.58960 -9.55706 -9.25188 -9.08668 -8.63153 -8.62820 -8.11581 -6.71412 -6.32850 -4.43001 1.31977 1.59617 1.80343 2.23978 2.30097 2.37709 2.90605 3.10629 3.14012 3.21367 3.24397 3.45857 3.99350 4.04121 4.19940 4.26106 4.28771 4.61159 4.62817 4.99441 5.02511 5.04706 5.17987 5.25510 5.29329 5.45572 5.48401 5.53192 5.64797 5.70982 6.06969 6.07615 6.30655 6.42626 6.46682 6.57519 6.59148 6.61116 6.66984 6.77673 6.95350 7.16412 7.20504 7.22355 7.48550 7.64844 7.76124 7.88973 7.95680 8.55801 9.22018 10.72911 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.002686 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.097275 B =10422.011057 C =11743.773710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.072 3.928 7 N -0.885 5.885 8 Si 0.907 3.093 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.271 1.271 12 S -0.180 6.180 13 C -0.091 4.091 14 C -0.113 4.113 15 C -0.118 4.118 16 C -0.121 4.121 17 C -0.125 4.125 18 C 0.145 3.855 19 N -0.648 5.648 20 C 0.501 3.499 21 O -0.502 6.502 22 C 0.117 3.883 23 H 0.130 0.870 24 C -0.161 4.161 25 N -0.445 5.445 26 C -0.058 4.058 27 C -0.028 4.028 28 N -0.499 5.499 29 C 0.212 3.788 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.151 0.849 38 H 0.416 0.584 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.174 0.826 43 H 0.169 0.831 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -6.760 14.672 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 H 0.070 0.930 4 C -0.553 4.553 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.067 5.933 13 C -0.206 4.206 14 C -0.137 4.137 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.147 4.147 18 C 0.044 3.956 19 N -0.292 5.292 20 C 0.286 3.714 21 O -0.377 6.377 22 C 0.009 3.991 23 H 0.148 0.852 24 C -0.219 4.219 25 N -0.128 5.128 26 C -0.190 4.190 27 C -0.175 4.175 28 N -0.217 5.217 29 C -0.071 4.071 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.157 0.843 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.169 0.831 38 H 0.254 0.746 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.191 0.809 43 H 0.186 0.814 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.112 -7.025 15.743 17.369 hybrid contribution -0.088 0.432 -2.300 2.342 sum 2.024 -6.594 13.443 15.109 Atomic orbital electron populations 1.22162 0.96208 1.00449 1.01711 1.21091 0.95627 0.97293 0.88299 0.92988 1.20603 1.32777 1.13338 0.88552 0.91494 1.24885 0.94598 0.94912 0.98894 1.69842 1.35683 1.22364 1.24307 0.86344 0.79398 0.79297 0.81598 1.20305 1.20878 1.19585 1.84930 1.74237 1.32427 1.01673 1.21706 1.04717 0.99007 0.95165 1.21323 0.99285 0.92472 1.00658 1.21074 1.00650 0.99485 0.92625 1.20983 1.00545 0.96406 0.96335 1.21468 0.99461 0.94063 0.99681 1.17224 1.00242 0.86211 0.91876 1.43393 1.57045 1.13900 1.14906 1.20589 0.78223 0.90326 0.82271 1.90697 1.53396 1.43851 1.49769 1.21284 0.99978 0.94211 0.83593 0.85181 1.22180 0.96326 0.98739 1.04692 1.45172 1.10440 1.50558 1.06648 1.22708 0.87477 1.10948 0.97865 1.22265 0.96702 1.06113 0.92436 1.70333 1.02244 1.19421 1.29683 1.24807 0.99818 1.02275 0.80164 0.88490 0.94147 0.95958 0.92285 0.84279 0.86089 0.86096 0.83128 0.74629 0.90734 0.89314 0.89961 0.80921 0.81410 0.78519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.57 37.16 0.32 -2.88 16 2 C 0.10 2.39 1.98 -27.89 -0.06 2.33 16 3 H 0.05 1.29 6.94 -51.92 -0.36 0.93 16 4 C -0.51 -12.98 8.58 -34.44 -0.30 -13.27 16 5 H 0.07 1.70 7.71 -52.48 -0.40 1.29 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -23.08 11.30 55.43 0.63 -22.45 16 8 Si 0.91 19.77 29.54 -169.99 -5.02 14.75 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 12 S -0.18 -3.46 19.87 -107.50 -2.14 -5.60 16 13 C -0.09 -1.61 6.04 -38.90 -0.24 -1.84 16 14 C -0.11 -1.98 8.01 -39.39 -0.32 -2.29 16 15 C -0.12 -1.77 10.04 -39.57 -0.40 -2.16 16 16 C -0.12 -1.72 10.04 -39.55 -0.40 -2.12 16 17 C -0.13 -1.92 8.80 -39.42 -0.35 -2.27 16 18 C 0.14 2.29 6.52 -83.43 -0.54 1.75 16 19 N -0.65 -8.27 5.10 -9.70 -0.05 -8.32 16 20 C 0.50 5.96 6.98 -10.98 -0.08 5.88 16 21 O -0.50 -7.59 12.34 5.55 0.07 -7.52 16 22 C 0.12 0.98 3.39 -69.08 -0.23 0.74 16 23 H 0.13 0.81 8.08 -51.93 -0.42 0.39 16 24 C -0.16 -0.98 9.15 37.16 0.34 -0.64 16 25 N -0.44 -4.54 2.40 -112.69 -0.27 -4.82 16 26 C -0.06 -0.57 11.54 -16.56 -0.19 -0.76 16 27 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 28 N -0.50 -6.73 11.25 -14.66 -0.16 -6.90 16 29 C 0.21 2.50 10.75 -90.37 -0.97 1.53 16 30 H 0.10 2.34 6.01 -51.93 -0.31 2.03 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.02 0.44 5.86 -51.93 -0.30 0.13 16 33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.14 2.62 4.85 -52.49 -0.25 2.36 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.15 2.29 5.37 -52.49 -0.28 2.01 16 38 H 0.42 4.71 7.09 -40.82 -0.29 4.42 16 39 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 40 H 0.09 0.46 7.69 -51.93 -0.40 0.06 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.20 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -30.45 373.10 -10.57 -41.02 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.53 Total: 9.02 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -3.71 Total: -14.81 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.14 Total: -42.48 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.07 Total: -7.52 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.14 Total: -5.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.45 -10.57 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066855922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.246 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds