Wall clock time and date at job start Tue Mar 31 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99992 * 2 1 4 4 C 1.53000 * 109.47245 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46885 * 65.00087 * 4 3 2 6 6 C 1.46502 * 120.00033 * 85.00465 * 5 4 3 7 7 C 1.50695 * 109.47383 * 80.84411 * 6 5 4 8 8 H 1.07998 * 120.00303 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00277 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99521 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00232 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47305 * 89.99678 * 11 9 7 13 13 H 1.48502 * 109.47066 * 209.99878 * 11 9 7 14 14 H 1.48502 * 109.46981 * 329.99588 * 11 9 7 15 15 S 1.65599 * 120.00140 * 265.27215 * 5 4 3 16 16 O 1.42093 * 106.40179 * 28.06415 * 15 5 4 17 17 O 1.42104 * 106.40161 * 160.97975 * 15 5 4 18 18 C 1.76198 * 107.22001 * 274.52101 * 15 5 4 19 19 C 1.38251 * 119.99946 * 12.85379 * 18 15 5 20 20 C 1.38220 * 119.99688 * 179.97438 * 19 18 15 21 21 C 1.38254 * 119.99943 * 0.02562 * 20 19 18 22 22 C 1.38210 * 120.00325 * 359.97438 * 21 20 19 23 23 C 1.38218 * 119.99650 * 192.58251 * 18 15 5 24 24 N 1.48015 * 120.00284 * 359.97438 * 23 18 15 25 25 O 1.21798 * 120.00077 * 172.56178 * 24 23 18 26 26 O 1.21800 * 119.99992 * 352.57120 * 24 23 18 27 27 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46850 * 299.99762 * 1 2 3 29 29 H 1.08997 * 109.47423 * 59.99606 * 1 2 3 30 30 H 1.09003 * 109.46712 * 60.00284 * 3 2 1 31 31 H 1.08993 * 109.47270 * 300.00185 * 3 2 1 32 32 H 1.08998 * 109.46867 * 305.00255 * 4 3 2 33 33 H 1.08999 * 109.46978 * 185.00022 * 4 3 2 34 34 H 1.09002 * 109.47185 * 200.84526 * 6 5 4 35 35 H 1.09003 * 109.47062 * 320.84347 * 6 5 4 36 36 H 0.97006 * 119.99765 * 180.02562 * 10 9 7 37 37 H 1.07999 * 120.00073 * 0.02562 * 19 18 15 38 38 H 1.08003 * 119.99574 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.99303 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.00020 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1808 1.3892 -2.4461 7 6 5.5287 2.0584 -2.3686 8 1 6.1685 1.8871 -1.5155 9 6 5.9450 2.8904 -3.3863 10 7 5.1657 3.0995 -4.4249 11 14 7.6161 3.7194 -3.2905 12 1 8.6386 2.8465 -3.9212 13 1 7.5655 5.0195 -4.0063 14 1 7.9728 3.9513 -1.8677 15 16 4.2348 -1.0696 -1.3210 16 8 3.3773 -1.6528 -0.3495 17 8 4.2045 -1.4236 -2.6969 18 6 5.8826 -1.3599 -0.7687 19 6 6.5879 -0.3519 -0.1381 20 6 7.8804 -0.5798 0.2956 21 6 8.4679 -1.8156 0.0984 22 6 7.7627 -2.8234 -0.5321 23 6 6.4679 -2.5972 -0.9609 24 7 5.7104 -3.6784 -1.6301 25 8 6.2671 -4.7218 -1.9214 26 8 4.5304 -3.5247 -1.8897 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6885 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 4.1384 0.7593 -3.3347 35 1 3.4008 2.1485 -2.5015 36 1 5.4587 3.6845 -5.1410 37 1 6.1288 0.6134 0.0164 38 1 8.4315 0.2078 0.7879 39 1 9.4779 -1.9935 0.4369 40 1 8.2219 -3.7886 -0.6865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069352182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:25 Heat of formation + Delta-G solvation = -74.773109 kcal Electronic energy + Delta-G solvation = -29990.255678 eV Core-core repulsion = 25708.848550 eV Total energy + Delta-G solvation = -4281.407128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19657 -39.36653 -37.76578 -36.64854 -36.39089 -35.57457 -35.00528 -32.71073 -32.17882 -31.66799 -29.53292 -26.83956 -26.59962 -25.79150 -23.60510 -23.24983 -22.60744 -21.56015 -19.79278 -18.66416 -18.22875 -17.53177 -17.30101 -16.93864 -16.49546 -16.23869 -15.64001 -15.52260 -15.18848 -15.08362 -14.71403 -14.56565 -14.29723 -13.64906 -13.25660 -12.91151 -12.76361 -12.64449 -12.17872 -11.97861 -11.78545 -11.60402 -11.49604 -11.34322 -11.27057 -11.16855 -11.16331 -11.04506 -10.88165 -10.61957 -10.55560 -10.52393 -10.14013 -9.92963 -9.83380 -9.59526 -9.27428 -8.61051 -8.21694 -6.22474 -4.30833 -0.30303 0.61419 0.92242 1.31181 1.38431 3.05480 3.14375 3.19477 3.22830 3.48500 4.09165 4.22576 4.25947 4.30569 4.51868 4.63978 4.80406 4.95522 5.11447 5.23476 5.30655 5.33741 5.39646 5.45467 5.50580 5.63050 5.65923 5.68797 5.82711 5.84924 5.95308 6.12620 6.13720 6.39339 6.45963 7.22527 7.29001 7.49574 7.58382 7.63749 7.72412 8.00503 8.71361 9.35467 10.85510 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.008311 B = 0.006815 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3368.056407 B = 4107.870109 C = 6120.907206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.037 3.963 4 C 0.128 3.872 5 N -0.980 5.980 6 C 0.240 3.760 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.883 5.883 11 Si 0.891 3.109 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.273 1.273 15 S 2.691 3.309 16 O -0.926 6.926 17 O -0.933 6.933 18 C -0.611 4.611 19 C -0.018 4.018 20 C -0.087 4.087 21 C -0.082 4.082 22 C -0.072 4.072 23 C 0.037 3.963 24 N 0.016 4.984 25 O -0.137 6.137 26 O -0.148 6.148 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.266 0.734 37 H 0.164 0.836 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.524 -4.047 12.622 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.042 4.042 4 C 0.002 3.998 5 N -0.821 5.821 6 C 0.119 3.881 7 C -0.588 4.588 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.520 5.520 11 Si 0.718 3.282 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.198 1.198 15 S 2.771 3.229 16 O -0.916 6.916 17 O -0.923 6.923 18 C -0.690 4.690 19 C -0.037 4.037 20 C -0.106 4.106 21 C -0.100 4.100 22 C -0.092 4.092 23 C -0.046 4.046 24 N 0.536 4.464 25 O -0.358 6.358 26 O -0.360 6.360 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.182 0.818 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.452 -4.213 12.506 13.423 hybrid contribution 1.405 0.819 -0.093 1.628 sum 3.857 -3.394 12.413 13.434 Atomic orbital electron populations 1.22704 0.82280 1.02426 0.99230 1.88186 1.18516 1.26541 1.95196 1.23074 0.94932 0.85714 1.00462 1.21251 0.92317 1.00621 0.85641 1.57637 1.79589 1.26304 1.18546 1.19324 0.96985 0.90836 0.80984 1.21513 1.02425 1.28933 1.05972 0.92087 1.24940 0.97295 0.96338 0.95097 1.69925 1.36591 1.36844 1.08682 0.86623 0.84208 0.79145 0.78224 1.20549 1.20886 1.19765 1.02849 0.72851 0.72600 0.74592 1.93612 1.59847 1.75427 1.62724 1.93593 1.85074 1.81562 1.32040 1.31764 1.30367 0.97428 1.09457 1.21262 0.94147 0.97514 0.90753 1.21787 0.94941 0.97369 0.96475 1.21411 1.00278 0.92198 0.96156 1.21111 0.90873 1.01781 0.95442 1.20500 0.94111 0.87256 1.02755 1.43761 1.01452 1.01927 0.99215 1.94471 1.71398 1.15128 1.54765 1.94582 0.98796 1.85569 1.57043 0.89910 0.94751 0.94446 0.92933 0.92351 0.90881 0.88006 0.92462 0.93899 0.92384 0.81827 0.83254 0.83101 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.46 8.53 -55.77 -0.48 -6.93 16 3 C 0.04 0.56 6.28 37.16 0.23 0.80 16 4 C 0.13 2.03 4.94 -4.04 -0.02 2.01 16 5 N -0.98 -19.63 1.89 -115.67 -0.22 -19.85 16 6 C 0.24 5.71 5.46 -5.20 -0.03 5.68 16 7 C -0.55 -13.43 9.34 -34.44 -0.32 -13.75 16 8 H 0.06 1.35 5.95 -52.49 -0.31 1.04 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.88 -24.42 13.29 55.43 0.74 -23.68 16 11 Si 0.89 19.57 29.54 -169.99 -5.02 14.55 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 15 S 2.69 58.10 3.90 -107.50 -0.42 57.68 16 16 O -0.93 -20.49 14.48 -69.02 -1.00 -21.49 16 17 O -0.93 -23.65 14.12 -67.07 -0.95 -24.60 16 18 C -0.61 -11.35 5.83 -39.58 -0.23 -11.58 16 19 C -0.02 -0.27 9.10 -39.58 -0.36 -0.63 16 20 C -0.09 -0.99 10.05 -39.58 -0.40 -1.38 16 21 C -0.08 -0.84 10.05 -39.59 -0.40 -1.24 16 22 C -0.07 -0.95 9.56 -39.58 -0.38 -1.32 16 23 C 0.04 0.66 6.81 -79.95 -0.54 0.12 16 24 N 0.02 0.33 4.45 33.96 0.15 0.48 16 25 O -0.14 -2.51 18.47 -29.46 -0.54 -3.05 16 26 O -0.15 -3.35 13.78 -39.45 -0.54 -3.90 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 32 H 0.07 1.02 7.74 -51.93 -0.40 0.62 16 33 H 0.10 1.43 8.11 -51.93 -0.42 1.01 16 34 H 0.06 1.55 6.80 -51.93 -0.35 1.20 16 35 H 0.04 1.04 8.02 -51.93 -0.42 0.62 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.16 2.31 5.23 -52.49 -0.27 2.03 16 38 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.16 1.62 7.63 -52.49 -0.40 1.21 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -34.54 352.16 -9.07 -43.61 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.67 Total: -0.01 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.43 Total: -18.12 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.67 Total: -43.05 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -3.51 Total: -59.97 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 58.10 SS G_CDS: -0.42 Total: 57.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.54 -9.07 -43.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069352182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.164 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds