Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47014 * 2 1 4 4 N 1.46497 * 109.47022 * 119.99847 * 2 1 3 5 5 C 1.46498 * 120.00315 * 119.20677 * 4 2 1 6 6 C 1.50700 * 109.47533 * 270.00383 * 5 4 2 7 7 H 1.07996 * 119.99399 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00114 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99932 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99763 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47191 * 90.00338 * 10 8 6 12 12 H 1.48503 * 109.47165 * 209.99934 * 10 8 6 13 13 H 1.48499 * 109.47317 * 330.00000 * 10 8 6 14 14 C 1.34784 * 119.99824 * 299.21012 * 4 2 1 15 15 O 1.21280 * 119.99871 * 5.31506 * 14 4 2 16 16 C 1.50703 * 119.99771 * 185.30727 * 14 4 2 17 17 C 1.53000 * 109.46998 * 177.82400 * 16 14 4 18 18 N 1.46497 * 109.47309 * 180.02562 * 17 16 14 19 19 N 1.39729 * 119.95850 * 270.02661 * 18 17 16 20 20 N 1.28362 * 122.95449 * 179.97438 * 19 18 17 21 21 C 1.35631 * 121.96458 * 359.97438 * 20 19 18 22 22 C 1.39734 * 121.33179 * 179.97438 * 21 20 19 23 23 C 1.37634 * 119.73674 * 180.02562 * 22 21 20 24 24 C 1.38881 * 120.81109 * 0.02852 * 23 22 21 25 25 C 1.37749 * 120.53676 * 359.97272 * 24 23 22 26 26 C 1.39377 * 119.56534 * 0.02562 * 25 24 23 27 27 C 1.35401 * 119.95811 * 89.99700 * 18 17 16 28 28 O 1.21739 * 121.31467 * 359.75943 * 27 18 17 29 29 H 1.08993 * 109.47181 * 306.62062 * 1 2 3 30 30 H 1.09007 * 109.46819 * 66.61883 * 1 2 3 31 31 H 1.08999 * 109.46798 * 186.61535 * 1 2 3 32 32 H 1.09001 * 109.47155 * 240.00113 * 2 1 3 33 33 H 1.09001 * 109.47180 * 173.89084 * 3 2 1 34 34 H 1.09006 * 109.47092 * 293.87986 * 3 2 1 35 35 H 1.08992 * 109.47406 * 53.88554 * 3 2 1 36 36 H 1.09002 * 109.46524 * 30.00537 * 5 4 2 37 37 H 1.09000 * 109.47283 * 149.99923 * 5 4 2 38 38 H 0.96998 * 119.99497 * 180.02562 * 9 8 6 39 39 H 1.09007 * 109.46897 * 57.82801 * 16 14 4 40 40 H 1.08998 * 109.47380 * 297.82926 * 16 14 4 41 41 H 1.08997 * 109.47039 * 60.00458 * 17 16 14 42 42 H 1.08997 * 109.46992 * 300.00643 * 17 16 14 43 43 H 1.07996 * 120.13059 * 0.04881 * 22 21 20 44 44 H 1.08006 * 119.59577 * 180.02562 * 23 22 21 45 45 H 1.08002 * 119.73165 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.21828 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0619 6 6 1.9609 -3.1108 1.0272 7 1 0.8888 -3.0016 1.0976 8 6 2.5196 -4.3653 0.9045 9 7 1.7470 -5.4292 0.8746 10 14 4.3739 -4.5538 0.7806 11 1 4.9483 -4.7032 2.1418 12 1 4.6962 -5.7573 -0.0275 13 1 4.9513 -3.3508 0.1289 14 6 1.7059 -0.2208 2.4202 15 8 0.9428 0.7149 2.5340 16 6 2.3047 -0.8584 3.6474 17 6 1.8331 -0.1072 4.8941 18 7 2.4156 -0.7267 6.0871 19 7 1.7375 -1.7604 6.7383 20 7 2.1945 -2.3437 7.7865 21 6 3.3814 -1.9947 8.3425 22 6 3.8661 -2.6383 9.4842 23 6 5.0746 -2.2573 10.0214 24 6 5.8207 -1.2387 9.4431 25 6 5.3642 -0.5892 8.3174 26 6 4.1428 -0.9597 7.7575 27 6 3.6106 -0.2971 6.5569 28 8 4.2229 0.5984 6.0044 29 1 -0.3633 0.6130 0.8247 30 1 -0.3633 0.4079 -0.9434 31 1 -0.3633 -1.0208 0.1184 32 1 1.8934 -0.5138 -0.8900 33 1 3.1246 1.4445 0.1094 34 1 1.7689 1.9237 -0.9397 35 1 1.5901 1.9869 0.8301 36 1 3.4223 -1.8345 0.1383 37 1 3.5266 -1.9609 1.9107 38 1 2.1401 -6.3117 0.7887 39 1 3.3921 -0.8140 3.5861 40 1 1.9865 -1.8992 3.7082 41 1 0.7457 -0.1517 4.9554 42 1 2.1513 0.9335 4.8333 43 1 3.2948 -3.4318 9.9429 44 1 5.4472 -2.7566 10.9037 45 1 6.7666 -0.9536 9.8795 46 1 5.9488 0.2020 7.8717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069416110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = 24.730263 kcal Electronic energy + Delta-G solvation = -30194.159664 eV Core-core repulsion = 26085.582315 eV Total energy + Delta-G solvation = -4108.577349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49560 -39.60896 -38.79430 -37.89918 -35.73684 -34.84700 -33.23603 -32.16566 -31.76845 -31.27815 -30.25877 -27.63364 -26.65513 -26.02526 -25.38273 -23.63418 -22.55627 -22.39542 -21.22438 -19.81893 -19.05429 -18.22772 -17.16916 -17.06815 -16.43846 -16.12717 -15.76019 -15.50923 -15.42374 -15.18731 -14.91387 -14.38432 -14.17303 -13.93973 -13.58349 -13.36630 -13.25387 -12.98891 -12.85442 -12.63126 -12.54726 -12.51354 -12.24569 -12.18488 -11.93063 -11.70311 -11.50838 -11.11151 -10.97775 -10.86656 -10.73821 -10.62546 -10.38781 -10.30552 -10.25580 -10.18516 -9.63220 -9.61839 -8.98711 -8.74482 -8.67640 -7.78382 -6.23566 -4.25293 -0.27616 0.36296 1.61022 1.78864 2.32282 3.14525 3.22593 3.24276 3.26313 3.41661 3.43546 3.71260 3.78548 4.21758 4.23998 4.38345 4.69688 4.75944 4.97920 5.05467 5.07401 5.08831 5.12792 5.38389 5.46649 5.53600 5.59021 5.61914 5.65185 5.73603 5.82664 5.86156 5.90036 6.05382 6.11241 6.15485 6.24214 6.30089 6.32066 6.45208 6.50003 6.59819 6.67946 6.89298 7.36674 7.37453 7.42255 8.08379 8.10220 8.38635 8.79758 8.88054 9.35713 10.88954 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.003528 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.409334 B = 7934.556774 C = 9387.546176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 C -0.165 4.165 4 N -0.585 5.585 5 C 0.207 3.793 6 C -0.541 4.541 7 H 0.081 0.919 8 C 0.078 3.922 9 N -0.888 5.888 10 Si 0.868 3.132 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.532 3.468 15 O -0.565 6.565 16 C -0.157 4.157 17 C 0.140 3.860 18 N -0.449 5.449 19 N 0.101 4.899 20 N -0.210 5.210 21 C 0.065 3.935 22 C -0.073 4.073 23 C -0.086 4.086 24 C -0.108 4.108 25 C -0.051 4.051 26 C -0.152 4.152 27 C 0.525 3.475 28 O -0.501 6.501 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 7.973 15.412 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 C -0.223 4.223 4 N -0.315 5.315 5 C 0.086 3.914 6 C -0.579 4.579 7 H 0.099 0.901 8 C -0.126 4.126 9 N -0.525 5.525 10 Si 0.694 3.306 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.189 1.189 14 C 0.320 3.680 15 O -0.446 6.446 16 C -0.198 4.198 17 C 0.018 3.982 18 N -0.274 5.274 19 N 0.115 4.885 20 N -0.101 5.101 21 C -0.044 4.044 22 C -0.095 4.095 23 C -0.105 4.105 24 C -0.128 4.128 25 C -0.071 4.071 26 C -0.163 4.163 27 C 0.315 3.685 28 O -0.372 6.372 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.167 0.833 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.828 8.204 14.933 18.007 hybrid contribution 2.132 -0.058 -0.145 2.138 sum 7.960 8.146 14.788 18.666 Atomic orbital electron populations 1.22170 0.95184 1.03000 1.01780 1.20868 0.94698 0.92104 0.87774 1.22199 1.00774 0.96931 1.02416 1.48001 1.51122 1.27896 1.04519 1.19863 0.91025 0.83192 0.97361 1.21380 0.95537 0.88970 1.52022 0.90138 1.24860 0.97690 0.95744 0.94296 1.69886 1.35218 0.98363 1.49077 0.86983 0.86333 0.78457 0.78812 1.20029 1.20747 1.18872 1.19897 0.80936 0.82758 0.84409 1.90563 1.36938 1.30321 1.86806 1.21989 1.02508 1.03027 0.92249 1.21637 1.00332 0.96974 0.79222 1.51287 1.18392 1.30732 1.26996 1.80355 1.15464 0.93195 0.99511 1.73993 1.11998 1.19921 1.04217 1.19693 0.91702 0.95698 0.97324 1.21040 0.96011 0.99180 0.93315 1.21389 0.93606 0.95987 0.99525 1.21401 1.00377 0.95711 0.95341 1.21123 0.93120 0.98417 0.94397 1.20627 0.98632 0.99409 0.97589 1.18742 0.81165 0.83783 0.84785 1.90896 1.57582 1.29203 1.59535 0.90765 0.93083 0.92029 0.89855 0.93202 0.92449 0.90846 0.94851 0.95465 0.92341 0.89123 0.86749 0.87178 0.87451 0.83302 0.84122 0.84273 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.01 37.16 0.33 -2.56 16 2 C 0.15 2.69 3.28 -67.93 -0.22 2.47 16 3 C -0.17 -2.60 9.01 37.16 0.33 -2.26 16 4 N -0.59 -11.84 2.41 -167.47 -0.40 -12.24 16 5 C 0.21 4.59 4.06 -5.19 -0.02 4.57 16 6 C -0.54 -14.20 9.94 -34.44 -0.34 -14.54 16 7 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 8 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 10 Si 0.87 20.05 27.47 -169.99 -4.67 15.38 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 14 C 0.53 10.46 7.08 -10.98 -0.08 10.38 16 15 O -0.56 -11.43 12.37 5.56 0.07 -11.36 16 16 C -0.16 -2.81 4.51 -27.88 -0.13 -2.93 16 17 C 0.14 2.20 5.03 -4.04 -0.02 2.18 16 18 N -0.45 -7.04 3.52 -61.31 -0.22 -7.25 16 19 N 0.10 1.56 12.76 60.35 0.77 2.33 16 20 N -0.21 -2.98 11.61 32.27 0.37 -2.60 16 21 C 0.07 0.81 6.72 -84.51 -0.57 0.24 16 22 C -0.07 -0.63 10.02 -39.24 -0.39 -1.02 16 23 C -0.09 -0.55 10.00 -39.56 -0.40 -0.95 16 24 C -0.11 -0.76 10.02 -39.52 -0.40 -1.15 16 25 C -0.05 -0.52 9.67 -39.34 -0.38 -0.90 16 26 C -0.15 -2.00 5.90 -104.76 -0.62 -2.61 16 27 C 0.53 8.26 7.75 -12.39 -0.10 8.16 16 28 O -0.50 -8.75 16.33 5.15 0.08 -8.67 16 29 H 0.07 1.38 6.27 -51.93 -0.33 1.06 16 30 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.48 7.79 -51.93 -0.40 1.08 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.25 6.47 -51.93 -0.34 0.92 16 36 H 0.03 0.73 6.97 -51.93 -0.36 0.37 16 37 H 0.03 0.59 5.81 -51.93 -0.30 0.29 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.09 1.61 7.48 -51.93 -0.39 1.23 16 40 H 0.11 2.22 8.10 -51.93 -0.42 1.80 16 41 H 0.11 1.65 8.08 -51.93 -0.42 1.23 16 42 H 0.11 1.70 7.46 -51.93 -0.39 1.31 16 43 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 45 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.15 1.37 7.81 -52.49 -0.41 0.96 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -31.59 384.01 -6.82 -38.41 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.31 Total: 4.20 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.08 Total: 1.09 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 1.30 Total: -44.83 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.15 Total: -20.03 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.59 -6.82 -38.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069416110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.136 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds