Wall clock time and date at job start Tue Mar 31 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99746 * 2 1 4 4 C 1.52999 * 109.47300 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46726 * 65.00339 * 4 3 2 6 6 C 1.46507 * 120.00136 * 274.99797 * 5 4 3 7 7 C 1.50693 * 109.47193 * 275.00474 * 6 5 4 8 8 H 1.08000 * 120.00303 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00114 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99794 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00431 * 179.97438 * 9 7 6 12 12 H 1.48510 * 109.46958 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47115 * 120.00026 * 11 9 7 14 14 H 1.48493 * 109.47448 * 240.00403 * 11 9 7 15 15 S 1.65593 * 120.00071 * 95.00295 * 5 4 3 16 16 O 1.42100 * 106.40243 * 336.46058 * 15 5 4 17 17 O 1.42100 * 106.40382 * 203.54030 * 15 5 4 18 18 C 1.76199 * 107.22096 * 89.99850 * 15 5 4 19 19 C 1.38238 * 119.99918 * 89.99922 * 18 15 5 20 20 C 1.38234 * 119.99693 * 179.97438 * 19 18 15 21 21 C 1.38234 * 120.00240 * 0.02562 * 20 19 18 22 22 N 1.48026 * 119.99930 * 179.97438 * 21 20 19 23 23 O 1.21793 * 119.99867 * 0.02562 * 22 21 20 24 24 O 1.21799 * 119.99956 * 179.97438 * 22 21 20 25 25 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 26 26 C 1.38234 * 120.00034 * 270.02265 * 18 15 5 27 27 H 1.08997 * 109.47254 * 299.99750 * 1 2 3 28 28 H 1.09006 * 109.47361 * 60.00056 * 1 2 3 29 29 H 1.09006 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.46764 * 60.00243 * 3 2 1 31 31 H 1.08995 * 109.47624 * 300.00378 * 3 2 1 32 32 H 1.09006 * 109.47046 * 305.00940 * 4 3 2 33 33 H 1.08996 * 109.47386 * 185.00341 * 4 3 2 34 34 H 1.09002 * 109.46861 * 34.99920 * 6 5 4 35 35 H 1.08997 * 109.46981 * 154.99700 * 6 5 4 36 36 H 0.97001 * 120.00019 * 180.02562 * 10 9 7 37 37 H 1.07991 * 120.00287 * 0.02562 * 19 18 15 38 38 H 1.08004 * 120.00214 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.99939 * 179.72815 * 25 21 20 40 40 H 1.07999 * 119.99990 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5642 -1.2509 6 6 4.0015 -0.8953 -1.3760 7 6 5.3000 -1.4247 -0.8241 8 1 6.0336 -0.7422 -0.4210 9 6 5.5516 -2.7803 -0.8338 10 7 4.6585 -3.6113 -1.3252 11 14 7.1614 -3.4365 -0.1505 12 1 7.9896 -2.3048 0.3383 13 1 6.8801 -4.3651 0.9737 14 1 7.8943 -4.1610 -1.2195 15 16 4.4472 1.5124 -2.5244 16 8 3.8194 2.7736 -2.3390 17 8 4.2784 0.7247 -3.6950 18 6 6.1792 1.7893 -2.3564 19 6 7.0785 0.9165 -2.9400 20 6 8.4372 1.1341 -2.8086 21 6 8.8968 2.2240 -2.0933 22 7 10.3518 2.4566 -1.9522 23 8 11.1441 1.6879 -2.4667 24 8 10.7567 3.4173 -1.3223 25 6 7.9976 3.0934 -1.5047 26 6 6.6387 2.8790 -1.6407 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8507 0.5685 0.8427 33 1 3.9783 2.1766 0.0903 34 1 3.1685 -1.3221 -0.8172 35 1 3.9136 -1.1715 -2.4267 36 1 4.8353 -4.5650 -1.3317 37 1 6.7195 0.0652 -3.4991 38 1 9.1399 0.4520 -3.2641 39 1 8.3567 3.9426 -0.9422 40 1 5.9361 3.5608 -1.1848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069416879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:31 Heat of formation + Delta-G solvation = -86.320423 kcal Electronic energy + Delta-G solvation = -28847.567558 eV Core-core repulsion = 24565.659701 eV Total energy + Delta-G solvation = -4281.907857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.29559 -39.40788 -37.87487 -37.01113 -36.68322 -35.62126 -35.50938 -32.71691 -32.32114 -31.55996 -29.66099 -26.93827 -26.85309 -25.77655 -23.38786 -23.00513 -22.77488 -21.94109 -19.49578 -19.00144 -18.78154 -17.65597 -17.63779 -17.20848 -16.50045 -16.19251 -15.86780 -15.65620 -15.14483 -15.05269 -14.66109 -14.52602 -14.01414 -13.92304 -13.63353 -13.48571 -12.76432 -12.52611 -12.20472 -12.06675 -11.92654 -11.87217 -11.71632 -11.64677 -11.40220 -11.39351 -11.24274 -11.20045 -11.03240 -10.99442 -10.74846 -10.51689 -10.25885 -10.00121 -9.90187 -9.50701 -9.38750 -8.56739 -8.23735 -6.19309 -4.26446 -0.48949 0.64645 0.82141 1.08774 1.25248 2.90794 3.17396 3.26952 3.27308 3.37117 3.96379 4.05853 4.13092 4.28433 4.31404 4.43449 4.83860 4.97842 5.06440 5.15289 5.20425 5.31036 5.33079 5.42711 5.50051 5.54262 5.55553 5.59644 5.63553 5.76654 5.87506 6.08245 6.12786 6.33724 6.35023 7.23176 7.34887 7.43756 7.52207 7.60469 7.77595 8.05673 8.78209 9.39854 10.88391 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.004909 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.707415 B = 5702.192638 C = 7559.753945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.131 3.869 5 N -0.967 5.967 6 C 0.241 3.759 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.883 5.883 11 Si 0.886 3.114 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.281 1.281 15 S 2.681 3.319 16 O -0.969 6.969 17 O -0.943 6.943 18 C -0.623 4.623 19 C 0.004 3.996 20 C -0.076 4.076 21 C -0.003 4.003 22 N 0.024 4.976 23 O -0.153 6.153 24 O -0.158 6.158 25 C -0.083 4.083 26 C -0.025 4.025 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 11.650 1.091 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.035 4.035 4 C 0.004 3.996 5 N -0.807 5.807 6 C 0.120 3.880 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.134 4.134 10 N -0.520 5.520 11 Si 0.714 3.286 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.207 1.207 15 S 2.767 3.233 16 O -0.959 6.959 17 O -0.933 6.933 18 C -0.705 4.705 19 C -0.015 4.015 20 C -0.096 4.096 21 C -0.085 4.085 22 N 0.545 4.455 23 O -0.371 6.371 24 O -0.374 6.374 25 C -0.103 4.103 26 C -0.045 4.045 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.187 0.813 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.461 11.480 0.328 11.745 hybrid contribution 1.918 -0.323 0.899 2.143 sum -0.543 11.156 1.227 11.237 Atomic orbital electron populations 1.22716 0.82134 1.02576 0.99200 1.88095 1.18629 1.26889 1.95182 1.23075 0.94903 0.85378 1.00193 1.21208 0.91812 0.97906 0.88644 1.57363 1.76828 1.19419 1.27076 1.19454 0.98510 0.70614 0.99410 1.21553 1.02860 0.92289 1.41897 0.92326 1.24885 0.96656 0.96837 0.95043 1.69935 1.34203 1.03304 1.44590 0.86642 0.83721 0.79203 0.79079 1.19945 1.20719 1.20677 1.02529 0.73330 0.73053 0.74376 1.93537 1.73085 1.42688 1.86598 1.93592 1.84535 1.69575 1.45639 1.32066 1.29715 1.02355 1.06395 1.21123 0.90710 0.96583 0.93095 1.21239 0.97447 0.94931 0.95976 1.21397 0.79706 1.01030 1.06379 1.43700 1.03630 0.99662 0.98501 1.94552 1.51814 1.42690 1.48009 1.94523 1.82950 1.20646 1.39283 1.21085 0.92551 0.98874 0.97788 1.20945 0.94774 0.94902 0.93883 0.94701 0.94516 0.89757 0.92824 0.93036 0.88644 0.90014 0.91645 0.93108 0.92529 0.81297 0.82180 0.82438 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.14 9.02 -35.23 -0.32 -6.46 16 3 C 0.04 0.61 6.28 37.16 0.23 0.85 16 4 C 0.13 1.96 5.79 -4.04 -0.02 1.94 16 5 N -0.97 -17.62 2.75 -115.66 -0.32 -17.93 16 6 C 0.24 5.50 5.27 -5.19 -0.03 5.48 16 7 C -0.55 -13.34 9.38 -34.44 -0.32 -13.67 16 8 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.88 -24.14 13.29 55.43 0.74 -23.41 16 11 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 S 2.68 45.92 5.65 -107.50 -0.61 45.31 16 16 O -0.97 -16.19 16.25 -57.17 -0.93 -17.11 16 17 O -0.94 -19.02 15.84 -57.17 -0.91 -19.92 16 18 C -0.62 -9.42 5.97 -39.58 -0.24 -9.66 16 19 C 0.00 0.07 9.52 -39.58 -0.38 -0.31 16 20 C -0.08 -1.08 9.56 -39.58 -0.38 -1.46 16 21 C 0.00 -0.04 6.85 -79.95 -0.55 -0.59 16 22 N 0.02 0.37 4.45 33.96 0.15 0.52 16 23 O -0.15 -2.42 18.45 -29.46 -0.54 -2.97 16 24 O -0.16 -2.38 18.45 -29.46 -0.54 -2.92 16 25 C -0.08 -1.03 9.56 -39.58 -0.38 -1.41 16 26 C -0.03 -0.32 9.52 -39.58 -0.38 -0.70 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.48 8.11 -51.93 -0.42 1.06 16 33 H 0.08 0.95 7.61 -51.93 -0.40 0.56 16 34 H 0.07 1.61 6.60 -51.93 -0.34 1.27 16 35 H 0.05 1.27 6.91 -51.93 -0.36 0.91 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.17 2.59 7.62 -52.49 -0.40 2.19 16 38 H 0.16 1.99 7.61 -52.48 -0.40 1.59 16 39 H 0.16 1.54 7.61 -52.48 -0.40 1.14 16 40 H 0.16 1.56 7.62 -52.49 -0.40 1.16 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -30.98 365.71 -8.98 -39.97 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.78 Total: 0.63 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.42 Total: -16.32 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.57 Total: -40.82 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -3.24 Total: -49.39 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 45.92 SS G_CDS: -0.61 Total: 45.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.98 -8.98 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069416879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.355 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds