Wall clock time and date at job start Tue Mar 31 2020 05:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36755 * 122.60802 * 2 1 4 4 C 1.36794 * 114.70529 * 180.29576 * 3 2 1 5 5 C 1.46310 * 125.18126 * 179.73075 * 4 3 2 6 6 O 1.21778 * 119.99784 * 4.80844 * 5 4 3 7 7 N 1.34778 * 120.00269 * 184.81430 * 5 4 3 8 8 C 1.36849 * 119.99882 * 354.01050 * 7 5 4 9 9 H 1.08006 * 119.99986 * 306.15869 * 8 7 5 10 10 C 1.39010 * 119.99816 * 126.16162 * 8 7 5 11 11 N 1.31393 * 120.00260 * 4.69326 * 10 8 7 12 12 Si 1.86804 * 119.99791 * 184.69567 * 10 8 7 13 13 H 1.48503 * 109.47056 * 89.99994 * 12 10 8 14 14 H 1.48499 * 109.46749 * 209.99740 * 12 10 8 15 15 H 1.48496 * 109.46914 * 329.99625 * 12 10 8 16 16 C 1.46497 * 120.00097 * 174.01359 * 7 5 4 17 17 C 1.47204 * 109.47276 * 94.88489 * 16 7 5 18 18 N 7.50458 * 147.81327 * 31.54290 * 2 1 3 19 19 S 1.75840 * 109.64360 * 359.59297 * 4 3 2 20 20 C 1.36540 * 122.60546 * 180.02562 * 2 1 3 21 21 C 1.47715 * 125.14535 * 359.94765 * 20 2 1 22 22 C 1.39641 * 120.12215 * 229.36322 * 21 20 2 23 23 C 1.37898 * 119.87345 * 179.74641 * 22 21 20 24 24 C 1.38608 * 120.11996 * 0.53643 * 23 22 21 25 25 F 1.35096 * 119.87625 * 179.74622 * 24 23 22 26 26 C 1.38613 * 120.25235 * 359.71675 * 24 23 22 27 27 C 1.37890 * 120.11857 * 0.02562 * 26 24 23 28 28 H 1.09003 * 109.47604 * 85.04187 * 1 2 3 29 29 H 1.09000 * 109.47234 * 205.04562 * 1 2 3 30 30 H 1.09006 * 109.47318 * 325.04672 * 1 2 3 31 31 H 1.08005 * 122.64757 * 0.02562 * 3 2 1 32 32 H 0.96995 * 120.00076 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47495 * 214.88184 * 16 7 5 34 34 H 1.08997 * 109.47137 * 334.88400 * 16 7 5 35 35 H 1.07997 * 120.06687 * 0.02562 * 22 21 20 36 36 H 1.07998 * 119.94149 * 180.27686 * 23 22 21 37 37 H 1.07996 * 119.94103 * 180.02562 * 26 24 23 38 38 H 1.08006 * 120.06105 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2439 1.1520 0.0000 4 6 3.5989 0.9639 -0.0064 5 6 4.5982 2.0325 -0.0134 6 8 4.2470 3.1952 0.0746 7 7 5.9075 1.7301 -0.1173 8 6 6.3119 0.4229 -0.0929 9 1 6.0143 -0.2192 0.7230 10 6 7.1057 -0.0783 -1.1180 11 7 7.5443 0.7240 -2.0616 12 14 7.5489 -1.8926 -1.1542 13 1 6.5197 -2.6384 -1.9221 14 1 8.8731 -2.0658 -1.8036 15 1 7.6063 -2.4159 0.2344 16 6 6.8978 2.8007 -0.2564 17 6 7.4399 3.1429 1.0687 18 7 7.8582 3.4069 2.0913 19 16 3.9567 -0.7577 -0.0010 20 6 2.2427 -1.1502 -0.0005 21 6 1.6834 -2.5174 0.0000 22 6 2.1468 -3.4638 0.9162 23 6 1.6174 -4.7371 0.9156 24 6 0.6350 -5.0814 0.0005 25 9 0.1234 -6.3318 0.0009 26 6 0.1749 -4.1476 -0.9148 27 6 0.6935 -2.8699 -0.9197 28 1 -0.3634 0.0888 -1.0238 29 1 -0.3634 -0.9310 0.4350 30 1 -0.3634 0.8423 0.5888 31 1 1.7918 2.1329 0.0004 32 1 8.0979 0.3742 -2.7771 33 1 7.7073 2.4649 -0.9045 34 1 6.4237 3.6797 -0.6930 35 1 2.9152 -3.1978 1.6270 36 1 1.9718 -5.4686 1.6267 37 1 -0.5910 -4.4212 -1.6253 38 1 0.3347 -2.1431 -1.6335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069462632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:07 Heat of formation + Delta-G solvation = -1.016535 kcal Electronic energy + Delta-G solvation = -26265.587856 eV Core-core repulsion = 22307.060762 eV Total energy + Delta-G solvation = -3958.527094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.074 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.96432 -39.26491 -38.99292 -37.13271 -35.81984 -34.87847 -32.05825 -31.76645 -31.28166 -29.81110 -28.18597 -26.38326 -25.37946 -23.41923 -23.00152 -21.80989 -19.90590 -18.73784 -18.20016 -17.57469 -17.25926 -16.31805 -16.04047 -15.71691 -15.58942 -15.45764 -14.81850 -14.66365 -14.15214 -13.99877 -13.67664 -13.58174 -13.40560 -13.25490 -13.02897 -12.88459 -12.43913 -12.22519 -12.21067 -12.10728 -11.70217 -11.52221 -11.51138 -11.38236 -11.35331 -11.26744 -11.01459 -10.69544 -10.54901 -10.11329 -9.37332 -9.21306 -9.08294 -8.84642 -8.05002 -7.75264 -7.60930 -6.88238 -4.82656 0.67570 1.16616 1.40944 2.29781 2.72022 2.86755 2.95106 2.97258 3.00875 3.30581 3.57200 3.62765 3.76216 4.03516 4.17748 4.49304 4.55239 4.68171 4.76922 4.81186 5.09971 5.18780 5.30378 5.45174 5.59902 5.76314 5.82570 5.84655 5.91556 5.97985 6.02948 6.12867 6.21833 6.26059 6.40518 6.55242 6.64049 6.75750 6.90791 6.95887 6.99615 7.46088 7.80731 8.30766 8.52237 8.91970 9.37605 10.11018 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.003786 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.607678 B = 7394.076830 C = 8778.151839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.206 4.206 5 C 0.556 3.444 6 O -0.579 6.579 7 N -0.438 5.438 8 C -0.346 4.346 9 H 0.100 0.900 10 C 0.073 3.927 11 N -0.839 5.839 12 Si 0.901 3.099 13 H -0.259 1.259 14 H -0.272 1.272 15 H -0.258 1.258 16 C 0.197 3.803 17 C 0.219 3.781 18 N -0.471 5.471 19 S 0.269 5.731 20 C -0.240 4.240 21 C -0.001 4.001 22 C -0.084 4.084 23 C -0.149 4.149 24 C 0.086 3.914 25 F -0.144 7.144 26 C -0.151 4.151 27 C -0.078 4.078 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.139 0.861 32 H 0.284 0.716 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 -9.422 -1.380 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.126 4.126 4 C -0.327 4.327 5 C 0.346 3.654 6 O -0.464 6.464 7 N -0.158 5.158 8 C -0.481 4.481 9 H 0.117 0.883 10 C -0.140 4.140 11 N -0.471 5.471 12 Si 0.724 3.276 13 H -0.184 1.184 14 H -0.197 1.197 15 H -0.181 1.181 16 C 0.071 3.929 17 C -0.099 4.099 18 N -0.151 5.151 19 S 0.548 5.452 20 C -0.357 4.357 21 C -0.003 4.003 22 C -0.103 4.103 23 C -0.168 4.168 24 C 0.067 3.933 25 F -0.123 7.123 26 C -0.170 4.170 27 C -0.098 4.098 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.157 0.843 32 H 0.095 0.905 33 H 0.166 0.834 34 H 0.123 0.877 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.954 -9.364 -0.012 12.286 hybrid contribution -1.188 -0.362 -0.551 1.359 sum -9.142 -9.726 -0.563 13.360 Atomic orbital electron populations 1.20515 0.90958 1.02125 1.01581 1.18836 0.96230 0.91084 1.05185 1.20093 0.91365 0.98981 1.02166 1.24342 0.97047 0.97529 1.13789 1.17443 0.82163 0.86871 0.78938 1.90722 1.80834 1.19773 1.55092 1.42983 1.02349 1.05607 1.64867 1.19296 1.35017 0.85249 1.08555 0.88327 1.25705 0.94585 1.00169 0.93518 1.69553 1.30109 1.36111 1.11364 0.86261 0.79265 0.81793 0.80264 1.18404 1.19705 1.18122 1.19266 0.95346 0.92741 0.85548 1.30450 0.92149 0.91639 0.95707 1.80984 1.11412 1.10581 1.12101 1.85443 0.96428 0.98045 1.65249 1.24842 1.04482 0.94193 1.12213 1.18178 0.95434 0.91337 0.95305 1.21241 0.99253 0.91737 0.98115 1.21038 0.97880 0.97887 0.99995 1.17789 0.96833 0.80018 0.98687 1.91477 1.85998 1.38788 1.96037 1.21040 1.02523 0.93468 0.99979 1.21195 0.95408 0.95276 0.97907 0.91828 0.92019 0.91900 0.84316 0.90505 0.83368 0.87670 0.84670 0.84705 0.84788 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 8.98 36.00 0.32 -0.81 16 2 C -0.10 -1.57 5.83 -105.77 -0.62 -2.19 16 3 C -0.09 -1.67 9.68 -40.64 -0.39 -2.06 16 4 C -0.21 -4.15 6.30 -36.86 -0.23 -4.39 16 5 C 0.56 12.65 7.58 -13.02 -0.10 12.56 16 6 O -0.58 -14.20 16.38 5.12 0.08 -14.12 16 7 N -0.44 -9.76 2.42 -119.55 -0.29 -10.05 16 8 C -0.35 -7.55 6.31 -15.03 -0.09 -7.64 16 9 H 0.10 2.12 5.98 -41.03 -0.25 1.87 16 10 C 0.07 1.56 5.40 -17.45 -0.09 1.46 16 11 N -0.84 -18.29 11.24 55.50 0.62 -17.67 16 12 Si 0.90 16.68 29.56 -169.99 -5.02 11.65 16 13 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 14 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 15 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 16 C 0.20 4.05 5.55 -6.83 -0.04 4.02 16 17 C 0.22 4.66 15.73 -20.76 -0.33 4.34 16 18 N -0.47 -10.58 18.54 42.15 0.78 -9.80 16 19 S 0.27 4.82 18.64 -107.50 -2.00 2.82 16 20 C -0.24 -3.78 5.96 -36.32 -0.22 -3.99 16 21 C 0.00 -0.01 5.19 -104.98 -0.55 -0.56 16 22 C -0.08 -1.05 9.75 -39.18 -0.38 -1.43 16 23 C -0.15 -1.69 10.01 -39.57 -0.40 -2.09 16 24 C 0.09 1.01 7.30 -39.31 -0.29 0.72 16 25 F -0.14 -1.73 17.26 2.25 0.04 -1.69 16 26 C -0.15 -1.65 10.01 -39.57 -0.40 -2.04 16 27 C -0.08 -0.92 8.35 -39.19 -0.33 -1.25 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.70 6.79 -51.93 -0.35 0.35 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.14 2.42 8.04 -52.48 -0.42 2.00 16 32 H 0.28 5.81 8.31 -40.82 -0.34 5.47 16 33 H 0.15 3.04 5.76 -51.93 -0.30 2.74 16 34 H 0.11 2.06 7.36 -51.93 -0.38 1.68 16 35 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 1.43 7.57 -52.48 -0.40 1.04 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -25.77 353.55 -7.93 -33.70 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.35 Total: 5.17 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -4.12 Total: -5.34 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 1.12 Total: -37.51 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.02 Total: 11.65 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -2.00 Total: 2.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -25.77 -7.93 -33.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069462632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.682 kcal (2) G-P(sol) polarization free energy of solvation -25.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds