Wall clock time and date at job start Tue Mar 31 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38795 * 120.49983 * 359.73087 * 12 11 10 14 14 C 1.38782 * 118.44958 * 179.70991 * 13 12 11 15 15 C 1.38087 * 119.35318 * 0.57949 * 14 13 12 16 16 N 1.31963 * 120.95129 * 359.68214 * 15 14 13 17 17 C 1.32271 * 121.69355 * 0.02562 * 16 15 14 18 18 N 1.39573 * 119.72883 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00246 * 359.97438 * 18 17 16 20 20 O 1.21288 * 119.99760 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00304 * 180.02562 * 19 18 17 22 22 C 1.50702 * 109.47059 * 180.02562 * 21 19 18 23 23 C 1.38250 * 119.97042 * 269.72252 * 22 21 19 24 24 C 1.38194 * 120.02403 * 179.72447 * 23 22 21 25 25 C 1.38462 * 119.97325 * 0.57251 * 24 23 22 26 26 F 1.35103 * 120.02260 * 179.67996 * 25 24 23 27 27 C 1.38451 * 119.95094 * 359.70243 * 25 24 23 28 28 C 1.38199 * 119.97439 * 0.02562 * 27 25 24 29 29 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.08006 * 120.77770 * 359.97407 * 13 12 11 35 35 H 1.07998 * 120.32458 * 180.26187 * 14 13 12 36 36 H 1.07992 * 119.52707 * 179.70108 * 15 14 13 37 37 H 0.97000 * 119.99910 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.46998 * 299.99981 * 21 19 18 39 39 H 1.08993 * 109.47139 * 59.99712 * 21 19 18 40 40 H 1.07997 * 119.98488 * 359.97438 * 23 22 21 41 41 H 1.08003 * 120.01463 * 180.25694 * 24 23 22 42 42 H 1.08001 * 120.02078 * 179.97438 * 27 25 24 43 43 H 1.07997 * 119.99266 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4506 -2.6365 -0.0011 12 6 6.0678 -3.8481 -0.0006 13 6 5.3220 -5.0186 0.0066 14 6 5.9958 -6.2319 0.0006 15 6 7.3767 -6.2393 0.0000 16 7 8.0614 -5.1112 -0.0013 17 6 7.4600 -3.9332 -0.0015 18 7 8.2247 -2.7656 -0.0034 19 6 9.5703 -2.8413 -0.0045 20 8 10.1167 -3.9242 -0.0043 21 6 10.3960 -1.5807 -0.0060 22 6 11.8598 -1.9390 -0.0076 23 6 12.5335 -2.0971 1.1892 24 6 13.8744 -2.4312 1.1891 25 6 14.5461 -2.5960 -0.0104 26 9 15.8586 -2.9163 -0.0118 27 6 13.8718 -2.4319 -1.2085 28 6 12.5295 -2.1032 -1.2059 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6796 0.8894 31 1 3.8746 -0.6807 -0.8905 32 1 3.6585 -3.1502 0.8903 33 1 3.6578 -3.1505 -0.8897 34 1 4.2425 -4.9861 0.0123 35 1 5.4456 -7.1612 0.0017 36 1 7.9039 -7.1818 0.0003 37 1 7.7877 -1.8996 -0.0040 38 1 10.1645 -0.9958 -0.8962 39 1 10.1660 -0.9947 0.8837 40 1 12.0106 -1.9633 2.1247 41 1 14.3995 -2.5587 2.1242 42 1 14.3947 -2.5597 -2.1448 43 1 12.0031 -1.9755 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069528046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:00 Heat of formation + Delta-G solvation = -50.393390 kcal Electronic energy + Delta-G solvation = -28046.203551 eV Core-core repulsion = 23778.615540 eV Total energy + Delta-G solvation = -4267.588011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.14608 -41.02411 -39.90180 -38.74657 -37.86524 -34.90922 -33.48071 -32.96456 -31.71771 -31.43834 -30.96567 -29.46800 -27.53136 -25.68379 -23.77562 -23.37551 -22.89490 -22.03919 -20.82975 -20.27747 -18.49725 -17.95876 -17.71634 -17.32241 -16.76731 -16.60823 -15.93102 -15.91024 -15.85777 -15.75518 -15.22432 -14.90882 -14.39363 -14.27795 -14.11205 -13.99136 -13.93930 -13.80959 -13.42790 -13.14301 -12.61490 -12.40765 -12.33956 -12.17503 -12.12903 -12.02773 -11.29650 -11.28738 -11.02420 -10.79331 -10.45784 -10.28865 -10.19391 -9.96999 -9.48096 -9.38934 -9.31143 -9.17326 -8.83284 -8.72820 -7.77511 -6.23343 -4.25336 0.80623 0.95554 1.11794 1.35744 2.59600 2.74649 3.19397 3.27486 3.29823 3.33780 3.38248 3.91953 3.97750 4.26919 4.28723 4.36243 4.37488 4.59598 4.74213 4.81138 4.87468 4.93273 5.03473 5.10298 5.15331 5.19826 5.22359 5.38697 5.58833 5.68069 5.72602 5.74725 5.82309 5.91446 5.97160 6.10340 6.17079 6.23431 6.32054 6.49663 6.58354 6.89358 7.07750 7.14999 7.45839 7.58808 7.95612 8.25370 8.27444 8.76764 9.36053 10.89015 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.002220 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.500848 B =12609.186213 C =14449.149685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.073 3.927 11 O -0.320 6.320 12 C 0.066 3.934 13 C -0.146 4.146 14 C -0.159 4.159 15 C 0.076 3.924 16 N -0.444 5.444 17 C 0.328 3.672 18 N -0.654 5.654 19 C 0.503 3.497 20 O -0.470 6.470 21 C -0.102 4.102 22 C -0.075 4.075 23 C -0.074 4.074 24 C -0.152 4.152 25 C 0.096 3.904 26 F -0.142 7.142 27 C -0.152 4.152 28 C -0.074 4.074 29 H 0.267 0.733 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.423 0.577 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.684 -5.306 0.015 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.001 4.001 11 O -0.233 6.233 12 C 0.015 3.985 13 C -0.173 4.173 14 C -0.180 4.180 15 C -0.080 4.080 16 N -0.159 5.159 17 C 0.095 3.905 18 N -0.302 5.302 19 C 0.289 3.711 20 O -0.339 6.339 21 C -0.142 4.142 22 C -0.075 4.075 23 C -0.092 4.092 24 C -0.171 4.171 25 C 0.076 3.924 26 F -0.121 7.121 27 C -0.171 4.171 28 C -0.092 4.092 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.261 0.739 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 25.021 -5.757 0.016 25.675 hybrid contribution -0.980 1.046 -0.021 1.433 sum 24.041 -4.711 -0.005 24.498 Atomic orbital electron populations 1.69886 1.06295 1.27325 1.49782 1.24944 0.94778 0.99247 0.94054 0.86747 0.80397 0.83288 0.78740 1.20052 1.21143 1.18783 1.20806 0.88225 0.94978 1.52758 0.90733 1.19582 0.97044 0.89940 0.97893 1.23149 0.73927 1.02285 1.00704 1.86041 1.24597 1.24770 1.87862 1.19551 0.91040 0.86988 1.00952 1.21645 1.01300 0.91413 1.02912 1.21918 0.95521 0.98289 1.02264 1.22431 0.91141 0.95590 0.98847 1.67627 1.38470 0.96304 1.13489 1.17802 0.84548 0.87222 1.00891 1.43487 1.06364 1.07818 1.72533 1.20685 0.81660 0.91569 0.77229 1.90829 1.70492 1.29099 1.43497 1.20685 0.91174 0.96203 1.06137 1.19312 0.94055 1.00713 0.93451 1.20869 0.93291 0.97090 0.98000 1.21093 0.95491 1.03369 0.97137 1.17732 0.78268 1.01563 0.94792 1.91495 1.32811 1.90335 1.97460 1.21091 0.95444 1.03403 0.97159 1.20867 0.93291 0.97091 0.97990 0.92348 0.95368 0.95807 0.92300 0.92330 0.83583 0.84667 0.82580 0.73902 0.87293 0.87288 0.85024 0.84724 0.84725 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.96 55.43 0.77 -25.38 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.32 27.47 -169.99 -4.67 15.65 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 7 C -0.53 -14.04 9.66 -34.44 -0.33 -14.37 16 8 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 9 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 10 C 0.07 1.33 4.70 37.16 0.17 1.51 16 11 O -0.32 -5.30 9.38 -19.66 -0.18 -5.48 16 12 C 0.07 1.01 6.72 -38.92 -0.26 0.75 16 13 C -0.15 -2.00 9.14 -39.17 -0.36 -2.36 16 14 C -0.16 -1.87 10.10 -39.44 -0.40 -2.27 16 15 C 0.08 0.99 11.17 -17.55 -0.20 0.79 16 16 N -0.44 -6.98 7.88 -12.22 -0.10 -7.08 16 17 C 0.33 4.99 7.45 -154.44 -1.15 3.84 16 18 N -0.65 -8.27 5.39 -11.29 -0.06 -8.33 16 19 C 0.50 6.15 7.79 -10.99 -0.09 6.06 16 20 O -0.47 -7.55 14.29 5.55 0.08 -7.47 16 21 C -0.10 -0.80 5.83 -29.03 -0.17 -0.97 16 22 C -0.07 -0.68 4.37 -104.61 -0.46 -1.14 16 23 C -0.07 -0.66 9.70 -39.59 -0.38 -1.05 16 24 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 25 C 0.10 0.95 7.30 -39.42 -0.29 0.67 16 26 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 27 C -0.15 -1.38 10.03 -39.52 -0.40 -1.78 16 28 C -0.07 -0.66 9.70 -39.59 -0.38 -1.05 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 32 H 0.06 1.04 7.68 -51.93 -0.40 0.64 16 33 H 0.06 1.03 7.71 -51.93 -0.40 0.63 16 34 H 0.15 1.87 6.44 -52.48 -0.34 1.53 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.42 4.47 8.04 -40.82 -0.33 4.14 16 38 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -33.50 375.41 -8.96 -42.46 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.20 Total: 2.98 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -5.30 Total: -11.53 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.62 Total: -40.79 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.11 Total: -12.95 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.50 -8.96 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069528046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.936 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds