Wall clock time and date at job start Tue Mar 31 2020 07:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21282 * 120.00108 * 2 1 4 4 N 1.34783 * 120.00145 * 179.97438 * 2 1 3 5 5 C 1.46954 * 120.59802 * 179.97438 * 4 2 1 6 6 C 1.53370 * 108.63878 * 235.25019 * 5 4 2 7 7 N 1.46964 * 108.63308 * 310.57674 * 6 5 4 8 8 C 1.34779 * 120.59476 * 235.19711 * 7 6 5 9 9 O 1.21285 * 119.99794 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00122 * 179.97438 * 8 7 6 11 11 N 1.46494 * 109.47061 * 180.02562 * 10 8 7 12 12 C 1.36941 * 120.00147 * 270.00193 * 11 10 8 13 13 H 1.07995 * 120.00388 * 187.60258 * 12 11 10 14 14 C 1.38812 * 119.99783 * 7.59919 * 12 11 10 15 15 N 1.31625 * 120.00007 * 25.39688 * 14 12 11 16 16 Si 1.86804 * 120.00203 * 205.39680 * 14 12 11 17 17 H 1.48500 * 109.46886 * 89.99963 * 16 14 12 18 18 H 1.48494 * 109.47257 * 209.99937 * 16 14 12 19 19 H 1.48504 * 109.46738 * 330.00377 * 16 14 12 20 20 C 1.46501 * 120.00251 * 90.00120 * 11 10 8 21 21 C 1.50701 * 109.46738 * 89.13918 * 20 11 10 22 22 C 1.38230 * 119.99717 * 90.03948 * 21 20 11 23 23 C 1.38246 * 119.99703 * 179.97438 * 22 21 20 24 24 C 1.38236 * 119.99992 * 0.06908 * 23 22 21 25 25 C 1.38233 * 120.00017 * 359.90926 * 24 23 22 26 26 C 1.38236 * 120.00074 * 0.04558 * 25 24 23 27 27 C 1.46966 * 118.81333 * 55.47877 * 7 6 5 28 28 C 1.46964 * 120.59048 * 0.02562 * 4 2 1 29 29 H 1.09005 * 109.47311 * 240.00575 * 1 2 3 30 30 H 1.09004 * 109.47027 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47373 * 120.00371 * 1 2 3 32 32 H 1.09003 * 109.61269 * 115.50670 * 5 4 2 33 33 H 1.09001 * 109.61243 * 354.99342 * 5 4 2 34 34 H 1.08996 * 109.61168 * 190.83065 * 6 5 4 35 35 H 1.09001 * 109.74848 * 70.40457 * 6 5 4 36 36 H 1.09003 * 109.46887 * 60.00376 * 10 8 7 37 37 H 1.09004 * 109.47208 * 300.00784 * 10 8 7 38 38 H 0.97004 * 120.00009 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46823 * 329.14207 * 20 11 10 40 40 H 1.09002 * 109.47333 * 209.13756 * 20 11 10 41 41 H 1.07995 * 120.00834 * 359.69901 * 22 21 20 42 42 H 1.08003 * 119.99963 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.99651 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99568 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.00052 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.61013 * 64.26187 * 27 7 6 47 47 H 1.08995 * 109.60997 * 184.77915 * 27 7 6 48 48 H 1.08994 * 109.61315 * 244.49389 * 28 4 2 49 49 H 1.09012 * 109.61296 * 4.83722 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6504 -1.1825 0.0000 6 6 4.1314 -2.0167 -1.1937 7 7 3.4098 -3.2970 -1.1931 8 6 4.0836 -4.4643 -1.1936 9 8 5.2965 -4.4643 -1.1941 10 6 3.3301 -5.7694 -1.1924 11 7 4.2820 -6.8828 -1.1927 12 6 4.7261 -7.4038 -2.3787 13 1 5.3292 -8.2997 -2.3829 14 6 4.4009 -6.7805 -3.5756 15 7 4.1267 -5.4932 -3.5939 16 14 4.3526 -7.7684 -5.1603 17 1 2.9866 -8.3152 -5.3611 18 1 4.7064 -6.8886 -6.3030 19 1 5.3261 -8.8866 -5.0763 20 6 4.7590 -7.4391 0.0759 21 6 3.8307 -8.5389 0.5228 22 6 4.0649 -9.8433 0.1297 23 6 3.2136 -10.8523 0.5400 24 6 2.1274 -10.5565 1.3422 25 6 1.8934 -9.2522 1.7356 26 6 2.7452 -8.2434 1.3261 27 6 1.9402 -3.2818 -1.1983 28 6 1.4593 -2.4475 0.0005 29 1 -0.3634 -0.5138 0.8901 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5139 -0.8899 32 1 4.0120 -1.6279 0.9268 33 1 4.0268 -0.1636 -0.0905 34 1 5.2021 -2.2002 -1.1041 35 1 3.9283 -1.4827 -2.1220 36 1 2.7024 -5.8273 -2.0818 37 1 2.7043 -5.8268 -0.3018 38 1 3.8992 -5.0577 -4.4303 39 1 4.7818 -6.6535 0.8313 40 1 5.7625 -7.8429 -0.0588 41 1 4.9103 -10.0736 -0.5016 42 1 3.3963 -11.8713 0.2325 43 1 1.4621 -11.3448 1.6624 44 1 1.0450 -9.0213 2.3627 45 1 2.5627 -7.2244 1.6339 46 1 1.5823 -2.8344 -2.1256 47 1 1.5635 -4.3009 -1.1116 48 1 1.6644 -2.9831 0.9274 49 1 0.3883 -2.2639 -0.0865 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069532597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:21 Heat of formation + Delta-G solvation = 2.820610 kcal Electronic energy + Delta-G solvation = -31280.697561 eV Core-core repulsion = 27209.284570 eV Total energy + Delta-G solvation = -4071.412991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.16292 -38.91001 -38.47877 -36.56330 -35.18443 -33.44743 -32.12294 -31.82035 -30.47192 -30.12523 -29.64167 -27.86241 -26.33297 -25.60769 -23.58600 -22.64735 -22.10416 -21.78086 -20.43463 -19.67473 -18.15638 -17.07149 -16.81394 -16.26078 -15.95560 -15.77758 -15.49027 -15.31881 -14.94162 -14.66359 -14.56956 -14.46714 -13.71808 -13.65645 -13.53604 -13.27515 -13.07073 -12.98787 -12.76493 -12.45639 -12.35780 -12.23183 -12.07069 -11.99198 -11.44421 -11.35437 -11.24151 -11.13703 -11.02714 -10.84568 -10.74710 -10.51835 -10.31638 -10.08739 -9.91510 -9.84683 -8.96098 -8.88509 -8.49111 -8.30952 -8.24732 -7.73638 -7.03146 -5.88749 -3.13733 1.82230 1.84367 2.57511 2.92428 3.36145 3.44469 3.45091 3.79625 4.12872 4.21642 4.49164 4.52056 4.87422 4.96556 5.07463 5.18522 5.23644 5.25681 5.26717 5.30928 5.32120 5.42847 5.46566 5.53072 5.53743 5.61884 5.69789 5.77491 5.84954 5.90430 5.97954 6.01692 6.16127 6.19737 6.25015 6.37600 6.47571 6.51321 6.55851 6.68793 6.87713 6.92968 7.03588 7.22608 7.27060 7.37248 7.46617 7.71473 8.11431 8.14529 8.41632 9.06937 9.57504 9.76855 10.16385 11.21074 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.003656 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.494001 B = 7656.211320 C = 9403.845011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.554 6.554 4 N -0.609 5.609 5 C 0.099 3.901 6 C 0.106 3.894 7 N -0.628 5.628 8 C 0.535 3.465 9 O -0.527 6.527 10 C 0.167 3.833 11 N -0.565 5.565 12 C -0.244 4.244 13 H 0.078 0.922 14 C 0.001 3.999 15 N -0.897 5.897 16 Si 0.900 3.100 17 H -0.289 1.289 18 H -0.294 1.294 19 H -0.281 1.281 20 C 0.183 3.817 21 C -0.076 4.076 22 C -0.101 4.101 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.116 4.116 27 C 0.106 3.894 28 C 0.090 3.910 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.035 0.965 38 H 0.253 0.747 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 1.214 9.912 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.433 6.433 4 N -0.343 5.343 5 C -0.025 4.025 6 C -0.019 4.019 7 N -0.366 5.366 8 C 0.324 3.676 9 O -0.400 6.400 10 C 0.036 3.964 11 N -0.283 5.283 12 C -0.372 4.372 13 H 0.096 0.904 14 C -0.196 4.196 15 N -0.542 5.542 16 Si 0.730 3.270 17 H -0.216 1.216 18 H -0.221 1.221 19 H -0.206 1.206 20 C 0.056 3.944 21 C -0.079 4.079 22 C -0.120 4.120 23 C -0.143 4.143 24 C -0.156 4.156 25 C -0.145 4.145 26 C -0.135 4.135 27 C -0.019 4.019 28 C -0.034 4.034 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.081 0.919 47 H 0.114 0.886 48 H 0.092 0.908 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.155 1.806 9.737 13.487 hybrid contribution -0.215 -0.427 -1.209 1.300 sum -9.370 1.379 8.528 12.745 Atomic orbital electron populations 1.21933 0.91979 1.05216 1.04150 1.20815 0.90612 0.83056 0.75554 1.90695 1.70828 1.31110 1.50625 1.48115 1.07274 1.05964 1.72943 1.22063 0.79167 1.01941 0.99291 1.21636 0.98997 0.84943 0.96321 1.48284 1.05060 1.05702 1.77582 1.22161 0.88832 0.84583 0.72036 1.90509 1.14707 1.86226 1.48582 1.20749 0.91442 0.84330 0.99850 1.43804 1.49486 1.33978 1.00986 1.19219 1.29234 1.05945 0.82840 0.90390 1.24644 1.02293 0.95128 0.97519 1.69922 1.51572 1.06982 1.25765 0.86301 0.77806 0.79580 0.83311 1.21631 1.22104 1.20616 1.19755 0.94293 0.92039 0.88301 1.21073 0.96922 0.95880 0.94059 1.21062 0.99626 0.92545 0.98769 1.21087 0.95603 0.98902 0.98743 1.20956 0.98246 0.96396 1.00023 1.21014 0.99371 0.93285 1.00803 1.20988 0.95162 0.98548 0.98761 1.21898 0.82374 1.00881 0.96747 1.22357 0.96707 0.84348 0.99996 0.89458 0.89217 0.89256 0.91345 0.88650 0.88450 0.92573 0.87724 0.94714 0.93665 0.93560 0.92244 0.86370 0.86924 0.87111 0.87001 0.86933 0.91913 0.88647 0.90789 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 8.66 36.00 0.31 -1.07 16 2 C 0.51 6.53 7.81 -10.98 -0.09 6.44 16 3 O -0.55 -9.36 16.49 5.56 0.09 -9.27 16 4 N -0.61 -7.60 2.95 -172.24 -0.51 -8.11 16 5 C 0.10 1.38 6.59 -3.60 -0.02 1.36 16 6 C 0.11 1.76 6.59 -3.60 -0.02 1.74 16 7 N -0.63 -11.09 2.94 -172.24 -0.51 -11.60 16 8 C 0.54 11.76 5.79 -10.98 -0.06 11.70 16 9 O -0.53 -13.98 15.61 5.55 0.09 -13.89 16 10 C 0.17 3.54 3.77 -5.20 -0.02 3.52 16 11 N -0.56 -13.07 2.00 -175.98 -0.35 -13.42 16 12 C -0.24 -6.32 9.69 -15.06 -0.15 -6.47 16 13 H 0.08 2.01 7.95 -52.49 -0.42 1.59 16 14 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 15 N -0.90 -24.17 9.01 55.49 0.50 -23.67 16 16 Si 0.90 21.25 29.62 -169.99 -5.04 16.22 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.18 3.63 5.79 -5.19 -0.03 3.60 16 21 C -0.08 -1.33 5.46 -104.62 -0.57 -1.90 16 22 C -0.10 -1.69 9.70 -39.58 -0.38 -2.08 16 23 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.14 -1.86 10.05 -39.58 -0.40 -2.26 16 25 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 26 C -0.12 -1.78 9.70 -39.58 -0.38 -2.16 16 27 C 0.11 1.41 6.53 -3.39 -0.02 1.39 16 28 C 0.09 0.91 6.52 -3.39 -0.02 0.89 16 29 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 30 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.09 0.57 7.72 -51.93 -0.40 0.17 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.38 6.99 -51.93 -0.36 1.02 16 34 H 0.10 1.82 6.99 -51.93 -0.36 1.46 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.11 2.43 6.01 -51.93 -0.31 2.12 16 37 H 0.03 0.63 7.63 -51.93 -0.40 0.23 16 38 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.05 0.88 8.02 -51.93 -0.42 0.47 16 40 H 0.06 1.21 7.98 -51.93 -0.41 0.79 16 41 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.11 1.57 8.03 -52.48 -0.42 1.14 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.10 1.22 5.91 -51.93 -0.31 0.91 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.09 0.63 5.91 -51.92 -0.31 0.32 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -33.91 395.90 -9.97 -43.88 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.47 Total: 3.58 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -2.74 Total: 10.31 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.87 Total: -56.79 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.18 Total: -23.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.04 Total: 16.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.91 -9.97 -43.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069532597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.703 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds