Wall clock time and date at job start Tue Mar 31 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47843 * 2 1 4 4 C 1.53003 * 109.47142 * 120.00470 * 2 1 3 5 5 C 1.52995 * 117.49955 * 8.62040 * 4 2 1 6 6 C 1.52991 * 117.49765 * 299.99532 * 4 2 1 7 7 N 1.46505 * 109.47030 * 239.99843 * 2 1 3 8 8 C 1.46493 * 120.00082 * 300.00477 * 7 2 1 9 9 C 1.50700 * 109.47132 * 274.99501 * 8 7 2 10 10 H 1.07998 * 119.99721 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99789 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00175 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99648 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47196 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47131 * 119.99994 * 13 11 9 16 16 H 1.48504 * 109.46994 * 239.99924 * 13 11 9 17 17 S 1.65604 * 119.99762 * 120.00139 * 7 2 1 18 18 O 1.42098 * 106.39804 * 156.46520 * 17 7 2 19 19 O 1.42099 * 106.40118 * 23.53941 * 17 7 2 20 20 C 1.76206 * 107.21682 * 270.00259 * 17 7 2 21 21 C 1.38256 * 119.99946 * 114.97658 * 20 17 7 22 22 C 1.38215 * 120.07338 * 180.02562 * 21 20 17 23 23 C 1.38259 * 120.06411 * 359.97438 * 22 21 20 24 24 C 1.38360 * 120.00548 * 0.02562 * 23 22 21 25 25 F 1.35100 * 120.04001 * 179.97438 * 24 23 22 26 26 C 1.38365 * 120.00110 * 295.00364 * 20 17 7 27 27 F 1.35108 * 120.03441 * 0.24990 * 26 20 17 28 28 H 1.08999 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46848 * 299.99591 * 1 2 3 30 30 H 1.08995 * 109.47140 * 59.99208 * 1 2 3 31 31 H 1.09003 * 115.55230 * 154.32794 * 4 2 1 32 32 H 1.09002 * 117.49586 * 359.97438 * 5 4 2 33 33 H 1.09002 * 117.50423 * 145.02496 * 5 4 2 34 34 H 1.09003 * 117.50066 * 214.98184 * 6 4 2 35 35 H 1.09003 * 117.50233 * 359.97438 * 6 4 2 36 36 H 1.09003 * 109.47241 * 34.99595 * 8 7 2 37 37 H 1.09004 * 109.47048 * 154.99687 * 8 7 2 38 38 H 0.97001 * 120.00243 * 179.97438 * 12 11 9 39 39 H 1.08000 * 119.96449 * 0.02562 * 21 20 17 40 40 H 1.07997 * 119.96637 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.99482 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.0105 -1.4542 2.1116 6 6 1.6358 -0.1497 2.6095 7 7 2.0183 -0.6907 -1.1962 8 6 1.6643 -2.0932 -1.4281 9 6 2.6337 -2.9838 -0.6945 10 1 3.4337 -2.5486 -0.1140 11 6 2.4992 -4.3542 -0.7645 12 7 1.5253 -4.8841 -1.4717 13 14 3.7004 -5.4582 0.1454 14 1 4.6957 -4.6216 0.8628 15 1 2.9602 -6.2945 1.1242 16 1 4.3997 -6.3362 -0.8269 17 16 2.9704 0.1142 -2.2863 18 8 3.7117 -0.8790 -2.9815 19 8 3.5794 1.1829 -1.5748 20 6 1.8960 0.8536 -3.4711 21 6 1.8169 2.2305 -3.5681 22 6 0.9743 2.8121 -4.4966 23 6 0.2091 2.0181 -5.3306 24 6 0.2860 0.6398 -5.2361 25 9 -0.4618 -0.1367 -6.0504 26 6 1.1311 0.0563 -4.3040 27 9 1.2037 -1.2893 -4.2060 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.0324 -1.1642 1.1642 32 1 -0.0303 -1.4221 1.7892 33 1 1.3252 -2.3796 2.5941 34 1 2.3621 -0.2167 3.4196 35 1 1.0069 0.7406 2.6146 36 1 0.6538 -2.2779 -1.0635 37 1 1.7103 -2.3078 -2.4958 38 1 1.4309 -5.8483 -1.5212 39 1 2.4142 2.8522 -2.9177 40 1 0.9135 3.8878 -4.5706 41 1 -0.4487 2.4737 -6.0560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:47 Heat of formation + Delta-G solvation = -95.710853 kcal Electronic energy + Delta-G solvation = -29957.172501 eV Core-core repulsion = 25601.884361 eV Total energy + Delta-G solvation = -4355.288140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.56054 -48.63252 -38.97902 -38.26441 -36.72483 -35.32440 -34.70224 -32.46171 -31.41932 -30.54789 -29.52774 -26.78939 -24.41693 -23.86803 -23.04851 -22.24154 -21.82175 -19.39988 -18.88759 -17.97702 -17.59669 -17.32221 -16.84473 -16.47602 -16.31670 -15.91958 -15.63077 -15.04148 -14.97653 -14.87363 -14.43451 -14.36278 -14.03250 -13.58602 -13.25536 -12.95922 -12.55969 -12.47159 -12.36209 -12.18117 -11.91738 -11.77897 -11.57970 -11.47695 -11.42282 -11.08576 -10.92420 -10.78737 -10.69164 -10.68016 -10.43403 -10.05572 -9.77747 -9.63712 -9.45547 -9.30488 -8.92349 -8.36226 -8.11696 -5.99224 -4.00601 0.32671 0.72493 0.83019 2.92374 3.33764 3.41826 3.42533 3.46804 3.61553 4.08784 4.16495 4.35750 4.41191 4.49254 4.50853 4.73028 5.00485 5.18152 5.19256 5.26815 5.38090 5.43727 5.54278 5.60279 5.63314 5.67416 5.71611 5.80975 5.85352 5.97445 6.05617 6.25540 6.36192 6.46519 6.56597 6.66115 6.70315 6.90676 7.31136 7.45353 7.63011 7.97646 8.27086 8.98989 9.62093 11.09892 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.005240 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.102019 B = 5342.637743 C = 6359.913186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.182 3.818 3 H 0.089 0.911 4 C -0.132 4.132 5 C -0.165 4.165 6 C -0.195 4.195 7 N -0.969 5.969 8 C 0.246 3.754 9 C -0.513 4.513 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 S 2.679 3.321 18 O -0.926 6.926 19 O -0.966 6.966 20 C -0.693 4.693 21 C -0.009 4.009 22 C -0.128 4.128 23 C -0.081 4.081 24 C 0.045 3.955 25 F -0.125 7.125 26 C 0.173 3.827 27 F -0.093 7.093 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.051 0.949 38 H 0.261 0.739 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 16.264 -2.284 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.107 0.893 4 C -0.152 4.152 5 C -0.201 4.201 6 C -0.233 4.233 7 N -0.809 5.809 8 C 0.125 3.875 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.139 4.139 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.210 1.210 17 S 2.764 3.236 18 O -0.916 6.916 19 O -0.956 6.956 20 C -0.774 4.774 21 C -0.028 4.028 22 C -0.146 4.146 23 C -0.100 4.100 24 C 0.024 3.976 25 F -0.103 7.103 26 C 0.151 3.849 27 F -0.071 7.071 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.175 0.825 40 H 0.165 0.835 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.265 16.064 -2.448 16.800 hybrid contribution -0.290 -1.086 -0.123 1.131 sum -4.555 14.978 -2.571 15.865 Atomic orbital electron populations 1.22299 0.95844 1.03399 1.00921 1.20197 0.93528 0.94818 0.83897 0.89301 1.22509 1.01063 1.02327 0.89295 1.22931 0.98763 0.94999 1.03454 1.23006 1.04354 0.97859 0.98046 1.57543 1.69940 1.22559 1.30891 1.19347 0.97215 0.72587 0.98315 1.21448 1.13101 0.90737 1.30023 0.91974 1.24870 0.95559 0.97917 0.95547 1.69927 1.31352 1.11577 1.40573 0.86555 0.81257 0.80745 0.79553 1.19727 1.21154 1.20980 1.02675 0.74252 0.73121 0.73525 1.93654 1.66696 1.57282 1.73973 1.93510 1.73394 1.57059 1.71639 1.31783 1.20527 1.04695 1.20419 1.20979 0.94621 0.91661 0.95527 1.21196 0.96783 1.00784 0.95886 1.21332 0.98802 0.90609 0.99216 1.17698 0.96304 0.89668 0.93951 1.91559 1.73981 1.74517 1.70245 1.17146 0.94831 0.78374 0.94549 1.91749 1.94204 1.26821 1.94315 0.90549 0.92043 0.93176 0.86639 0.88648 0.89235 0.89491 0.89491 0.94227 0.93115 0.92904 0.82493 0.83499 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 7.76 37.16 0.29 -2.14 16 2 C 0.18 3.09 3.03 -67.93 -0.21 2.88 16 3 H 0.09 1.36 6.91 -51.93 -0.36 1.00 16 4 C -0.13 -2.31 4.63 -90.63 -0.42 -2.73 16 5 C -0.16 -2.67 9.57 -26.73 -0.26 -2.92 16 6 C -0.19 -2.73 9.90 -26.74 -0.26 -2.99 16 7 N -0.97 -19.48 2.73 -108.57 -0.30 -19.78 16 8 C 0.25 5.97 4.67 -5.20 -0.02 5.95 16 9 C -0.51 -13.76 8.22 -34.44 -0.28 -14.05 16 10 H 0.06 1.66 6.27 -52.49 -0.33 1.33 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 13 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 S 2.68 52.40 5.28 -107.50 -0.57 51.83 16 18 O -0.93 -21.98 16.41 -57.17 -0.94 -22.92 16 19 O -0.97 -18.41 15.53 -57.17 -0.89 -19.30 16 20 C -0.69 -11.08 5.91 -39.53 -0.23 -11.31 16 21 C -0.01 -0.11 9.55 -39.58 -0.38 -0.48 16 22 C -0.13 -1.17 10.04 -39.58 -0.40 -1.56 16 23 C -0.08 -0.81 10.02 -39.53 -0.40 -1.20 16 24 C 0.04 0.63 7.31 -39.37 -0.29 0.34 16 25 F -0.12 -1.85 17.18 2.25 0.04 -1.81 16 26 C 0.17 2.93 7.22 -39.37 -0.28 2.65 16 27 F -0.09 -1.91 13.65 2.25 0.03 -1.88 16 28 H 0.08 1.26 5.53 -51.93 -0.29 0.97 16 29 H 0.06 0.75 7.07 -51.93 -0.37 0.38 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.12 2.30 6.51 -51.93 -0.34 1.96 16 32 H 0.10 1.47 5.85 -51.93 -0.30 1.17 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.05 7.61 -51.93 -0.40 0.66 16 36 H 0.04 0.98 6.45 -51.93 -0.33 0.65 16 37 H 0.05 1.34 5.06 -51.93 -0.26 1.07 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.16 1.60 7.33 -52.49 -0.38 1.21 16 40 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -32.39 351.64 -9.46 -41.85 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.61 Total: 1.15 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.24 Total: -25.93 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.44 Total: -44.93 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.83 Total: -42.22 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.07 Total: -3.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -0.57 Total: 51.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.39 -9.46 -41.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.861 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds