Wall clock time and date at job start Tue Mar 31 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47843 * 2 1 4 4 C 1.53003 * 109.47142 * 120.00470 * 2 1 3 5 5 C 1.52995 * 117.49955 * 8.62040 * 4 2 1 6 6 C 1.52991 * 117.49765 * 299.99532 * 4 2 1 7 7 N 1.46505 * 109.47030 * 239.99843 * 2 1 3 8 8 C 1.46493 * 120.00082 * 300.00477 * 7 2 1 9 9 C 1.50700 * 109.47132 * 274.99501 * 8 7 2 10 10 H 1.07998 * 119.99721 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99789 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00175 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99648 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47196 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47131 * 119.99994 * 13 11 9 16 16 H 1.48504 * 109.46994 * 239.99924 * 13 11 9 17 17 S 1.65604 * 119.99762 * 120.00139 * 7 2 1 18 18 O 1.42098 * 106.39804 * 156.46520 * 17 7 2 19 19 O 1.42099 * 106.40118 * 23.53941 * 17 7 2 20 20 C 1.76206 * 107.21682 * 270.00259 * 17 7 2 21 21 C 1.38256 * 119.99946 * 114.97658 * 20 17 7 22 22 C 1.38215 * 120.07338 * 180.02562 * 21 20 17 23 23 C 1.38259 * 120.06411 * 359.97438 * 22 21 20 24 24 C 1.38360 * 120.00548 * 0.02562 * 23 22 21 25 25 F 1.35100 * 120.04001 * 179.97438 * 24 23 22 26 26 C 1.38365 * 120.00110 * 295.00364 * 20 17 7 27 27 F 1.35108 * 120.03441 * 0.24990 * 26 20 17 28 28 H 1.08999 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46848 * 299.99591 * 1 2 3 30 30 H 1.08995 * 109.47140 * 59.99208 * 1 2 3 31 31 H 1.09003 * 115.55230 * 154.32794 * 4 2 1 32 32 H 1.09002 * 117.49586 * 359.97438 * 5 4 2 33 33 H 1.09002 * 117.50423 * 145.02496 * 5 4 2 34 34 H 1.09003 * 117.50066 * 214.98184 * 6 4 2 35 35 H 1.09003 * 117.50233 * 359.97438 * 6 4 2 36 36 H 1.09003 * 109.47241 * 34.99595 * 8 7 2 37 37 H 1.09004 * 109.47048 * 154.99687 * 8 7 2 38 38 H 0.97001 * 120.00243 * 179.97438 * 12 11 9 39 39 H 1.08000 * 119.96449 * 0.02562 * 21 20 17 40 40 H 1.07997 * 119.96637 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.99482 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.0105 -1.4542 2.1116 6 6 1.6358 -0.1497 2.6095 7 7 2.0183 -0.6907 -1.1962 8 6 1.6643 -2.0932 -1.4281 9 6 2.6337 -2.9838 -0.6945 10 1 3.4337 -2.5486 -0.1140 11 6 2.4992 -4.3542 -0.7645 12 7 1.5253 -4.8841 -1.4717 13 14 3.7004 -5.4582 0.1454 14 1 4.6957 -4.6216 0.8628 15 1 2.9602 -6.2945 1.1242 16 1 4.3997 -6.3362 -0.8269 17 16 2.9704 0.1142 -2.2863 18 8 3.7117 -0.8790 -2.9815 19 8 3.5794 1.1829 -1.5748 20 6 1.8960 0.8536 -3.4711 21 6 1.8169 2.2305 -3.5681 22 6 0.9743 2.8121 -4.4966 23 6 0.2091 2.0181 -5.3306 24 6 0.2860 0.6398 -5.2361 25 9 -0.4618 -0.1367 -6.0504 26 6 1.1311 0.0563 -4.3040 27 9 1.2037 -1.2893 -4.2060 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.0324 -1.1642 1.1642 32 1 -0.0303 -1.4221 1.7892 33 1 1.3252 -2.3796 2.5941 34 1 2.3621 -0.2167 3.4196 35 1 1.0069 0.7406 2.6146 36 1 0.6538 -2.2779 -1.0635 37 1 1.7103 -2.3078 -2.4958 38 1 1.4309 -5.8483 -1.5212 39 1 2.4142 2.8522 -2.9177 40 1 0.9135 3.8878 -4.5706 41 1 -0.4487 2.4737 -6.0560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069599513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:46 Heat of formation + Delta-G solvation = -116.875210 kcal Electronic energy + Delta-G solvation = -29958.090256 eV Core-core repulsion = 25601.884361 eV Total energy + Delta-G solvation = -4356.205895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.79321 -49.84314 -39.96906 -39.63157 -38.32874 -36.96013 -36.27399 -34.46713 -32.43880 -31.54744 -31.00751 -28.62692 -25.89712 -24.99220 -24.14259 -23.95806 -23.03087 -20.79390 -20.16808 -19.35898 -18.91258 -18.71689 -18.27315 -18.20336 -17.56009 -17.23036 -17.07355 -16.45164 -16.32559 -16.17903 -15.92702 -15.58235 -15.38726 -15.15217 -14.57509 -14.32106 -14.11772 -13.67332 -13.52811 -13.44906 -13.26931 -13.24921 -13.11017 -13.07625 -13.02929 -12.69023 -12.57489 -12.49065 -12.31162 -12.03285 -11.94492 -11.79833 -11.33941 -11.05515 -10.69882 -10.61158 -10.49747 -9.97271 -9.78268 -8.13362 -6.20207 -0.80345 -0.56448 -0.28057 1.35860 1.39021 1.49173 1.83877 2.14193 2.42491 2.50954 2.65319 3.07398 3.13340 3.19611 3.29885 3.53081 3.64870 3.87589 3.95605 4.00410 4.20784 4.30102 4.31265 4.37533 4.53412 4.61871 4.68005 4.72941 4.88009 4.91374 4.94222 5.03241 5.07215 5.23907 5.29294 5.37404 5.43069 5.53492 5.56595 5.60705 5.80652 5.98247 6.19687 6.85813 7.45010 8.95392 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.005240 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.102019 B = 5342.637743 C = 6359.913186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.110 0.890 4 C -0.164 4.164 5 C -0.177 4.177 6 C -0.155 4.155 7 N -0.977 5.977 8 C 0.267 3.733 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.011 3.989 12 N -0.928 5.928 13 Si 0.946 3.054 14 H -0.269 1.269 15 H -0.273 1.273 16 H -0.285 1.285 17 S 2.684 3.316 18 O -0.985 6.985 19 O -0.967 6.967 20 C -0.701 4.701 21 C -0.007 4.007 22 C -0.097 4.097 23 C -0.055 4.055 24 C 0.031 3.969 25 F -0.135 7.135 26 C 0.127 3.873 27 F -0.130 7.130 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.029 0.971 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.179 0.821 40 H 0.206 0.794 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 20.595 -1.977 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 H 0.127 0.873 4 C -0.184 4.184 5 C -0.214 4.214 6 C -0.192 4.192 7 N -0.816 5.816 8 C 0.144 3.856 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.187 4.187 12 N -0.569 5.569 13 Si 0.772 3.228 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.211 1.211 17 S 2.776 3.224 18 O -0.975 6.975 19 O -0.957 6.957 20 C -0.788 4.788 21 C -0.026 4.026 22 C -0.115 4.115 23 C -0.074 4.074 24 C 0.010 3.990 25 F -0.114 7.114 26 C 0.106 3.894 27 F -0.109 7.109 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.197 0.803 40 H 0.223 0.777 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.427 20.387 -2.073 21.198 hybrid contribution 0.050 -2.211 -0.299 2.232 sum -5.377 18.176 -2.373 19.102 Atomic orbital electron populations 1.22245 0.93942 1.02425 1.03104 1.20527 0.95096 0.95153 0.82285 0.87263 1.22452 0.99802 1.04548 0.91644 1.22941 0.98839 0.95800 1.03774 1.23108 1.03321 0.97350 0.95432 1.57381 1.70018 1.21329 1.32848 1.18776 0.95876 0.74775 0.96183 1.21756 1.13044 0.91418 1.29421 0.92653 1.25624 0.97174 0.99416 0.96535 1.70036 1.32979 1.11796 1.42118 0.85681 0.79443 0.79058 0.78586 1.19312 1.19881 1.21136 1.01921 0.74318 0.72648 0.73495 1.93580 1.69281 1.59619 1.75042 1.93490 1.74001 1.56240 1.71971 1.31080 1.21145 1.06412 1.20203 1.21460 0.95047 0.89718 0.96423 1.21850 0.93534 1.03340 0.92813 1.21957 0.98073 0.88288 0.99053 1.18060 0.96083 0.91291 0.93531 1.91529 1.74149 1.75283 1.70408 1.17620 0.97511 0.77150 0.97150 1.91648 1.94786 1.29570 1.94847 0.93088 0.88715 0.92000 0.90171 0.87929 0.90925 0.88379 0.86356 0.95352 0.95722 0.92874 0.80337 0.77676 0.78550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 7.76 71.98 0.56 -3.91 16 2 C 0.17 5.88 3.03 44.99 0.14 6.02 16 3 H 0.11 3.17 6.91 -2.39 -0.02 3.15 16 4 C -0.16 -5.80 4.63 -10.80 -0.05 -5.85 16 5 C -0.18 -5.72 9.57 30.59 0.29 -5.43 16 6 C -0.15 -3.98 9.90 30.59 0.30 -3.68 16 7 N -0.98 -41.02 2.73 -497.41 -1.36 -42.38 16 8 C 0.27 13.84 4.67 85.63 0.40 14.24 16 9 C -0.52 -29.37 8.22 25.60 0.21 -29.16 16 10 H 0.06 3.14 6.27 -2.91 -0.02 3.13 16 11 C 0.01 0.63 5.46 84.66 0.46 1.09 16 12 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 13 Si 0.95 46.17 29.54 68.60 2.03 48.20 16 14 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 17 S 2.68 108.93 5.28 -56.49 -0.30 108.63 16 18 O -0.98 -50.27 16.41 -128.00 -2.10 -52.37 16 19 O -0.97 -36.71 15.53 -128.00 -1.99 -38.70 16 20 C -0.70 -22.19 5.91 22.30 0.13 -22.06 16 21 C -0.01 -0.15 9.55 22.27 0.21 0.06 16 22 C -0.10 -1.17 10.04 22.27 0.22 -0.94 16 23 C -0.06 -0.83 10.02 22.30 0.22 -0.61 16 24 C 0.03 0.84 7.31 22.41 0.16 1.00 16 25 F -0.14 -3.98 17.18 44.97 0.77 -3.20 16 26 C 0.13 4.44 7.22 22.41 0.16 4.60 16 27 F -0.13 -5.84 13.65 44.97 0.61 -5.23 16 28 H 0.05 1.70 5.53 -2.39 -0.01 1.69 16 29 H 0.09 2.00 7.07 -2.39 -0.02 1.98 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 3.37 6.51 -2.39 -0.02 3.36 16 32 H 0.10 3.14 5.85 -2.39 -0.01 3.12 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.12 2.34 7.61 -2.39 -0.02 2.32 16 36 H 0.03 1.52 6.45 -2.39 -0.02 1.50 16 37 H 0.02 1.43 5.06 -2.38 -0.01 1.42 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.18 2.85 7.33 -2.91 -0.02 2.83 16 40 H 0.21 0.26 8.06 -2.91 -0.02 0.24 16 41 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -78.96 351.64 2.47 -76.50 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.08 Total: 9.35 kcal Atomic # 6 Polarization: -48.06 SS G_CDS: 3.43 Total: -44.63 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -1.07 Total: -98.54 kcal Atomic # 8 Polarization: -86.98 SS G_CDS: -4.09 Total: -91.07 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 1.39 Total: -8.43 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 16 Polarization: 108.93 SS G_CDS: -0.30 Total: 108.63 kcal Total: -78.96 2.47 -76.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.379 kcal (2) G-P(sol) polarization free energy of solvation -78.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds