Wall clock time and date at job start Tue Mar 31 2020 06:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47583 * 2 1 4 4 C 1.53002 * 109.46401 * 240.00068 * 2 1 3 5 5 C 1.53001 * 117.49513 * 128.62888 * 4 2 1 6 6 C 1.52993 * 117.49937 * 60.00537 * 4 2 1 7 7 N 1.46505 * 109.47344 * 120.00667 * 2 1 3 8 8 C 1.46494 * 120.00036 * 59.98928 * 7 2 1 9 9 C 1.50694 * 109.47789 * 275.00354 * 8 7 2 10 10 H 1.08007 * 119.99777 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00467 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00011 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47226 * 90.00069 * 13 11 9 15 15 H 1.48498 * 109.46860 * 209.99941 * 13 11 9 16 16 H 1.48500 * 109.47195 * 329.99810 * 13 11 9 17 17 S 1.65594 * 119.99689 * 239.99761 * 7 2 1 18 18 O 1.42098 * 106.40229 * 336.45557 * 17 7 2 19 19 O 1.42107 * 106.40031 * 203.53551 * 17 7 2 20 20 C 1.76202 * 107.22094 * 89.99882 * 17 7 2 21 21 C 1.38256 * 120.00387 * 114.99875 * 20 17 7 22 22 C 1.38215 * 120.06983 * 179.97438 * 21 20 17 23 23 C 1.38256 * 120.07338 * 359.97438 * 22 21 20 24 24 C 1.38370 * 119.99591 * 0.02562 * 23 22 21 25 25 F 1.35105 * 120.02908 * 180.02562 * 24 23 22 26 26 C 1.38374 * 119.99797 * 294.97160 * 20 17 7 27 27 F 1.35106 * 120.03513 * 0.02562 * 26 20 17 28 28 H 1.09010 * 109.46250 * 299.99723 * 1 2 3 29 29 H 1.08994 * 109.47180 * 59.99642 * 1 2 3 30 30 H 1.08995 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.08999 * 115.55090 * 274.32786 * 4 2 1 32 32 H 1.08998 * 117.50305 * 359.97438 * 5 4 2 33 33 H 1.09003 * 117.49933 * 145.01949 * 5 4 2 34 34 H 1.09004 * 117.50022 * 214.97134 * 6 4 2 35 35 H 1.09002 * 117.49972 * 359.97222 * 6 4 2 36 36 H 1.09010 * 109.47199 * 35.00633 * 8 7 2 37 37 H 1.09006 * 109.46874 * 155.00140 * 8 7 2 38 38 H 0.97003 * 120.00463 * 179.97438 * 12 11 9 39 39 H 1.07997 * 119.95889 * 0.25095 * 21 20 17 40 40 H 1.08000 * 119.96228 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.99940 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0398 -0.7213 -1.2493 5 6 3.0741 0.0051 -2.1117 6 6 1.6356 -0.1495 -2.6096 7 7 2.0184 -0.6908 1.1961 8 6 1.6644 -2.0932 1.4279 9 6 0.3225 -2.1667 2.1097 10 1 -0.2133 -1.2592 2.3464 11 6 -0.2217 -3.3922 2.4305 12 7 0.4304 -4.4971 2.1420 13 14 -1.8855 -3.4830 3.2751 14 1 -2.9577 -3.5537 2.2501 15 1 -1.9398 -4.6943 4.1325 16 1 -2.0815 -2.2735 4.1140 17 16 2.9705 0.1140 2.2861 18 8 3.5795 1.1827 1.5747 19 8 3.7119 -0.8792 2.9813 20 6 1.8963 0.8533 3.4711 21 6 1.9325 0.4398 4.7899 22 6 1.0909 1.0192 5.7207 23 6 0.2113 2.0138 5.3351 24 6 0.1727 2.4298 4.0159 25 9 -0.6862 3.4020 3.6385 26 6 1.0168 1.8481 3.0819 27 9 0.9808 2.2528 1.7933 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 2.1265 -1.8045 -1.1643 32 1 3.3909 0.9969 -1.7893 33 1 3.8414 -0.6003 -2.5943 34 1 1.4567 -0.8565 -3.4197 35 1 1.0060 0.7403 -2.6145 36 1 1.6164 -2.6184 0.4738 37 1 2.4197 -2.5587 2.0612 38 1 0.0477 -5.3593 2.3680 39 1 2.6223 -0.3336 5.0939 40 1 1.1209 0.6951 6.7505 41 1 -0.4461 2.4653 6.0632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:52 Heat of formation + Delta-G solvation = -105.253547 kcal Electronic energy + Delta-G solvation = -30246.672265 eV Core-core repulsion = 25890.970323 eV Total energy + Delta-G solvation = -4355.701942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.57344 -48.63721 -38.81258 -38.09920 -36.75315 -35.40183 -34.97451 -32.53811 -31.27640 -30.40522 -29.57515 -27.03797 -23.92375 -23.44126 -22.98922 -22.64054 -21.90699 -19.61965 -18.88858 -18.10507 -17.57523 -17.32059 -16.96971 -16.57922 -16.30849 -15.75220 -15.60175 -15.04390 -14.89708 -14.72263 -14.51293 -14.36534 -14.10674 -13.44642 -13.21106 -12.90010 -12.44691 -12.33397 -12.29431 -12.13318 -12.05533 -11.88075 -11.65892 -11.58135 -11.31253 -11.20218 -11.10704 -10.99321 -10.70553 -10.52552 -10.41283 -10.11663 -9.96766 -9.76579 -9.52152 -9.38527 -8.79431 -8.52041 -8.12972 -6.14632 -4.19494 0.48928 0.88434 0.90274 3.08392 3.21380 3.29297 3.30219 3.44125 3.67052 4.07792 4.19464 4.24109 4.33297 4.48515 4.61137 4.88898 5.01240 5.08093 5.19822 5.28640 5.32643 5.37898 5.58415 5.66104 5.69486 5.84014 5.85810 5.91772 6.00921 6.02097 6.15272 6.18346 6.38381 6.44750 6.59283 6.61350 6.72629 7.11494 7.30400 7.37437 7.60199 7.81986 8.10988 8.83657 9.45538 10.93348 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.007363 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.127654 B = 3801.666612 C = 5406.419166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.183 3.817 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.186 4.186 6 C -0.176 4.176 7 N -0.968 5.968 8 C 0.243 3.757 9 C -0.536 4.536 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.888 5.888 13 Si 0.888 3.112 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 S 2.688 3.312 18 O -0.964 6.964 19 O -0.947 6.947 20 C -0.674 4.674 21 C 0.006 3.994 22 C -0.122 4.122 23 C -0.081 4.081 24 C 0.043 3.957 25 F -0.129 7.129 26 C 0.166 3.834 27 F -0.111 7.111 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.264 0.736 39 H 0.160 0.840 40 H 0.148 0.852 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 10.876 1.683 11.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.076 3.924 3 H 0.105 0.895 4 C -0.170 4.170 5 C -0.223 4.223 6 C -0.213 4.213 7 N -0.807 5.807 8 C 0.121 3.879 9 C -0.575 4.575 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.526 5.526 13 Si 0.715 3.285 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 S 2.774 3.226 18 O -0.954 6.954 19 O -0.937 6.937 20 C -0.756 4.756 21 C -0.013 4.013 22 C -0.141 4.141 23 C -0.100 4.100 24 C 0.023 3.977 25 F -0.107 7.107 26 C 0.145 3.855 27 F -0.089 7.089 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.177 0.823 40 H 0.166 0.834 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.689 10.792 1.677 11.052 hybrid contribution -2.088 0.207 0.555 2.171 sum -0.400 10.999 2.232 11.230 Atomic orbital electron populations 1.22165 0.94468 1.04434 1.00178 1.20302 0.94905 0.94479 0.82712 0.89531 1.22661 1.02863 1.00572 0.90892 1.23059 0.92367 1.02301 1.04540 1.22880 0.97986 1.03112 0.97365 1.57407 1.69091 1.23023 1.31208 1.19298 0.96401 0.73685 0.98510 1.21547 1.04042 0.92645 1.39296 0.91986 1.24889 0.97425 0.95610 0.95655 1.69917 1.38104 0.97668 1.46900 0.86662 0.84445 0.77646 0.79702 1.20568 1.21096 1.19924 1.02213 0.74040 0.73178 0.73171 1.93554 1.73722 1.56599 1.71530 1.93562 1.67773 1.58077 1.74308 1.31479 1.18629 1.10326 1.15210 1.20989 0.95532 0.95118 0.89706 1.21217 0.95722 0.96210 1.00928 1.21301 0.98561 0.96730 0.93438 1.17600 0.93833 0.92632 0.93677 1.91530 1.67598 1.59726 1.91875 1.16936 0.95525 0.94263 0.78814 1.91600 1.95026 1.88949 1.33372 0.93191 0.93234 0.89457 0.86553 0.88651 0.89146 0.89043 0.88955 0.93434 0.92830 0.92597 0.82259 0.83440 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 7.85 37.16 0.29 -2.43 16 2 C 0.18 3.29 2.17 -67.93 -0.15 3.15 16 3 H 0.09 1.53 5.62 -51.93 -0.29 1.24 16 4 C -0.15 -2.48 5.17 -90.62 -0.47 -2.94 16 5 C -0.19 -2.67 10.18 -26.73 -0.27 -2.94 16 6 C -0.18 -2.38 9.73 -26.73 -0.26 -2.64 16 7 N -0.97 -19.59 2.73 -108.57 -0.30 -19.89 16 8 C 0.24 5.67 4.99 -5.20 -0.03 5.64 16 9 C -0.54 -13.31 7.53 -34.44 -0.26 -13.57 16 10 H 0.06 1.52 7.07 -52.48 -0.37 1.15 16 11 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 13 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 17 S 2.69 53.14 5.34 -107.50 -0.57 52.57 16 18 O -0.96 -19.66 15.99 -57.17 -0.91 -20.57 16 19 O -0.95 -20.43 15.52 -57.17 -0.89 -21.32 16 20 C -0.67 -11.90 5.91 -39.52 -0.23 -12.14 16 21 C 0.01 0.09 9.55 -39.58 -0.38 -0.29 16 22 C -0.12 -1.48 10.04 -39.58 -0.40 -1.88 16 23 C -0.08 -0.99 10.02 -39.53 -0.40 -1.39 16 24 C 0.04 0.65 7.31 -39.37 -0.29 0.37 16 25 F -0.13 -1.93 17.18 2.25 0.04 -1.89 16 26 C 0.17 2.86 7.22 -39.37 -0.28 2.57 16 27 F -0.11 -1.96 13.06 2.25 0.03 -1.93 16 28 H 0.05 0.90 6.80 -51.92 -0.35 0.55 16 29 H 0.05 0.74 7.29 -51.93 -0.38 0.37 16 30 H 0.09 1.72 6.65 -51.93 -0.35 1.38 16 31 H 0.12 2.06 6.54 -51.93 -0.34 1.73 16 32 H 0.10 1.38 8.05 -51.93 -0.42 0.96 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.17 7.61 -51.93 -0.39 0.77 16 36 H 0.05 1.15 6.39 -51.92 -0.33 0.81 16 37 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.16 2.26 7.33 -52.49 -0.38 1.88 16 40 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -29.60 354.07 -9.56 -39.17 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.79 Total: 3.72 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -3.22 Total: -26.83 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.44 Total: -43.46 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.80 Total: -41.89 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.07 Total: -3.83 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 53.14 SS G_CDS: -0.57 Total: 52.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.60 -9.56 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.088 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds