Wall clock time and date at job start Tue Mar 31 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47583 * 2 1 4 4 C 1.53002 * 109.46401 * 240.00068 * 2 1 3 5 5 C 1.53001 * 117.49513 * 128.62888 * 4 2 1 6 6 C 1.52993 * 117.49937 * 60.00537 * 4 2 1 7 7 N 1.46505 * 109.47344 * 120.00667 * 2 1 3 8 8 C 1.46494 * 120.00036 * 59.98928 * 7 2 1 9 9 C 1.50694 * 109.47789 * 275.00354 * 8 7 2 10 10 H 1.08007 * 119.99777 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00467 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00011 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47226 * 90.00069 * 13 11 9 15 15 H 1.48498 * 109.46860 * 209.99941 * 13 11 9 16 16 H 1.48500 * 109.47195 * 329.99810 * 13 11 9 17 17 S 1.65594 * 119.99689 * 239.99761 * 7 2 1 18 18 O 1.42098 * 106.40229 * 336.45557 * 17 7 2 19 19 O 1.42107 * 106.40031 * 203.53551 * 17 7 2 20 20 C 1.76202 * 107.22094 * 89.99882 * 17 7 2 21 21 C 1.38256 * 120.00387 * 114.99875 * 20 17 7 22 22 C 1.38215 * 120.06983 * 179.97438 * 21 20 17 23 23 C 1.38256 * 120.07338 * 359.97438 * 22 21 20 24 24 C 1.38370 * 119.99591 * 0.02562 * 23 22 21 25 25 F 1.35105 * 120.02908 * 180.02562 * 24 23 22 26 26 C 1.38374 * 119.99797 * 294.97160 * 20 17 7 27 27 F 1.35106 * 120.03513 * 0.02562 * 26 20 17 28 28 H 1.09010 * 109.46250 * 299.99723 * 1 2 3 29 29 H 1.08994 * 109.47180 * 59.99642 * 1 2 3 30 30 H 1.08995 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.08999 * 115.55090 * 274.32786 * 4 2 1 32 32 H 1.08998 * 117.50305 * 359.97438 * 5 4 2 33 33 H 1.09003 * 117.49933 * 145.01949 * 5 4 2 34 34 H 1.09004 * 117.50022 * 214.97134 * 6 4 2 35 35 H 1.09002 * 117.49972 * 359.97222 * 6 4 2 36 36 H 1.09010 * 109.47199 * 35.00633 * 8 7 2 37 37 H 1.09006 * 109.46874 * 155.00140 * 8 7 2 38 38 H 0.97003 * 120.00463 * 179.97438 * 12 11 9 39 39 H 1.07997 * 119.95889 * 0.25095 * 21 20 17 40 40 H 1.08000 * 119.96228 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.99940 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0398 -0.7213 -1.2493 5 6 3.0741 0.0051 -2.1117 6 6 1.6356 -0.1495 -2.6096 7 7 2.0184 -0.6908 1.1961 8 6 1.6644 -2.0932 1.4279 9 6 0.3225 -2.1667 2.1097 10 1 -0.2133 -1.2592 2.3464 11 6 -0.2217 -3.3922 2.4305 12 7 0.4304 -4.4971 2.1420 13 14 -1.8855 -3.4830 3.2751 14 1 -2.9577 -3.5537 2.2501 15 1 -1.9398 -4.6943 4.1325 16 1 -2.0815 -2.2735 4.1140 17 16 2.9705 0.1140 2.2861 18 8 3.5795 1.1827 1.5747 19 8 3.7119 -0.8792 2.9813 20 6 1.8963 0.8533 3.4711 21 6 1.9325 0.4398 4.7899 22 6 1.0909 1.0192 5.7207 23 6 0.2113 2.0138 5.3351 24 6 0.1727 2.4298 4.0159 25 9 -0.6862 3.4020 3.6385 26 6 1.0168 1.8481 3.0819 27 9 0.9808 2.2528 1.7933 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 2.1265 -1.8045 -1.1643 32 1 3.3909 0.9969 -1.7893 33 1 3.8414 -0.6003 -2.5943 34 1 1.4567 -0.8565 -3.4197 35 1 1.0060 0.7403 -2.6145 36 1 1.6164 -2.6184 0.4738 37 1 2.4197 -2.5587 2.0612 38 1 0.0477 -5.3593 2.3680 39 1 2.6223 -0.3336 5.0939 40 1 1.1209 0.6951 6.7505 41 1 -0.4461 2.4653 6.0632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069599517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:51 Heat of formation + Delta-G solvation = -122.350529 kcal Electronic energy + Delta-G solvation = -30247.413646 eV Core-core repulsion = 25890.970323 eV Total energy + Delta-G solvation = -4356.443323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.80005 -49.83634 -39.93966 -39.48043 -38.38024 -37.03372 -36.49545 -34.43587 -32.42433 -31.54099 -31.12441 -28.88562 -25.14506 -24.98298 -24.41378 -24.02718 -23.06335 -21.03190 -20.24509 -19.56597 -18.93795 -18.61353 -18.41733 -18.35595 -17.57679 -17.18566 -17.04703 -16.36188 -16.29046 -16.07114 -15.92771 -15.63839 -15.40488 -14.95807 -14.64027 -14.29076 -14.08861 -13.70412 -13.53254 -13.50892 -13.43747 -13.32817 -13.17673 -13.11771 -13.02295 -12.86663 -12.74286 -12.37395 -12.21803 -12.10942 -11.98047 -11.70417 -11.53531 -11.16966 -10.81299 -10.63061 -10.51312 -9.95285 -9.79333 -8.13286 -6.23656 -0.78677 -0.52663 -0.25945 1.41494 1.43507 1.51890 1.79406 2.10173 2.43565 2.47753 2.59421 2.95317 3.05950 3.18581 3.26233 3.50656 3.63796 3.75378 3.98861 4.05469 4.07130 4.22695 4.27406 4.30165 4.52116 4.60117 4.72723 4.74009 4.82303 4.85381 4.96452 4.96846 5.03590 5.19140 5.27367 5.32868 5.38749 5.47176 5.53147 5.65313 5.81718 5.93852 6.14832 6.85176 7.44123 8.94883 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.007363 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.127654 B = 3801.666612 C = 5406.419166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.180 3.820 3 H 0.090 0.910 4 C -0.180 4.180 5 C -0.182 4.182 6 C -0.151 4.151 7 N -0.974 5.974 8 C 0.260 3.740 9 C -0.529 4.529 10 H 0.065 0.935 11 C 0.018 3.982 12 N -0.924 5.924 13 Si 0.946 3.054 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.263 1.263 17 S 2.692 3.308 18 O -0.978 6.978 19 O -0.975 6.975 20 C -0.693 4.693 21 C -0.011 4.011 22 C -0.105 4.105 23 C -0.062 4.062 24 C 0.035 3.965 25 F -0.129 7.129 26 C 0.140 3.860 27 F -0.122 7.122 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.033 0.967 37 H 0.025 0.975 38 H 0.264 0.736 39 H 0.162 0.838 40 H 0.195 0.805 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 12.460 3.075 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.074 3.926 3 H 0.107 0.893 4 C -0.200 4.200 5 C -0.219 4.219 6 C -0.189 4.189 7 N -0.812 5.812 8 C 0.137 3.863 9 C -0.569 4.569 10 H 0.083 0.917 11 C -0.181 4.181 12 N -0.564 5.564 13 Si 0.772 3.228 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.188 1.188 17 S 2.783 3.217 18 O -0.968 6.968 19 O -0.966 6.966 20 C -0.780 4.780 21 C -0.031 4.031 22 C -0.123 4.123 23 C -0.080 4.080 24 C 0.014 3.986 25 F -0.108 7.108 26 C 0.119 3.881 27 F -0.100 7.100 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.051 0.949 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.179 0.821 40 H 0.213 0.787 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.101 12.382 3.025 12.747 hybrid contribution -1.502 -0.201 0.182 1.526 sum -1.603 12.182 3.207 12.698 Atomic orbital electron populations 1.22077 0.94182 1.03023 1.01159 1.20451 0.95158 0.94469 0.82509 0.89253 1.22555 1.06008 0.99536 0.91947 1.23135 0.93192 1.01967 1.03613 1.23001 0.97229 1.03297 0.95362 1.57293 1.69225 1.22041 1.32652 1.18832 0.95175 0.75245 0.97009 1.21734 1.04161 0.92604 1.38382 0.91708 1.25627 1.00645 0.95363 0.96490 1.70038 1.39781 0.98142 1.48431 0.85735 0.80462 0.77840 0.78797 1.20343 1.21053 1.18766 1.01665 0.74115 0.72737 0.73180 1.93524 1.74487 1.56515 1.72264 1.93519 1.69171 1.59111 1.74806 1.31006 1.19592 1.11764 1.15634 1.21313 0.96610 0.95687 0.89443 1.21751 0.93552 0.94747 1.02289 1.21884 0.97973 0.95447 0.92703 1.17863 0.93530 0.92692 0.94491 1.91528 1.67474 1.59724 1.92065 1.17189 0.96739 0.95175 0.79030 1.91557 1.95203 1.89114 1.34168 0.93946 0.90469 0.91854 0.88596 0.88757 0.87954 0.87389 0.87550 0.94905 0.95672 0.92658 0.82054 0.78747 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 7.85 71.98 0.56 -4.60 16 2 C 0.18 6.63 2.17 44.99 0.10 6.73 16 3 H 0.09 3.23 5.62 -2.39 -0.01 3.21 16 4 C -0.18 -6.06 5.17 -10.79 -0.06 -6.12 16 5 C -0.18 -5.14 10.18 30.60 0.31 -4.83 16 6 C -0.15 -3.88 9.73 30.59 0.30 -3.58 16 7 N -0.97 -41.03 2.73 -497.41 -1.36 -42.39 16 8 C 0.26 12.77 4.99 85.63 0.43 13.19 16 9 C -0.53 -26.80 7.53 25.60 0.19 -26.61 16 10 H 0.06 3.19 7.07 -2.91 -0.02 3.17 16 11 C 0.02 0.97 5.46 84.66 0.46 1.43 16 12 N -0.92 -51.82 13.29 21.45 0.28 -51.53 16 13 Si 0.95 41.17 29.54 68.60 2.03 43.20 16 14 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 17 S 2.69 110.47 5.34 -56.49 -0.30 110.17 16 18 O -0.98 -41.22 15.99 -128.00 -2.05 -43.27 16 19 O -0.98 -44.17 15.52 -128.00 -1.99 -46.16 16 20 C -0.69 -24.46 5.91 22.31 0.13 -24.33 16 21 C -0.01 -0.33 9.55 22.27 0.21 -0.11 16 22 C -0.11 -2.12 10.04 22.27 0.22 -1.89 16 23 C -0.06 -1.23 10.02 22.31 0.22 -1.01 16 24 C 0.04 0.98 7.31 22.41 0.16 1.14 16 25 F -0.13 -3.59 17.18 44.97 0.77 -2.82 16 26 C 0.14 4.75 7.22 22.41 0.16 4.91 16 27 F -0.12 -4.34 13.06 44.97 0.59 -3.75 16 28 H 0.04 1.53 6.80 -2.38 -0.02 1.52 16 29 H 0.08 2.24 7.29 -2.39 -0.02 2.22 16 30 H 0.06 2.54 6.65 -2.39 -0.02 2.52 16 31 H 0.10 3.60 6.54 -2.39 -0.02 3.59 16 32 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 2.42 8.14 -2.38 -0.02 2.41 16 35 H 0.11 2.43 7.61 -2.39 -0.02 2.42 16 36 H 0.03 1.69 6.39 -2.38 -0.02 1.68 16 37 H 0.03 1.37 6.91 -2.38 -0.02 1.36 16 38 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 39 H 0.16 4.51 7.33 -2.91 -0.02 4.49 16 40 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -66.39 354.07 2.47 -63.92 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 1.07 Total: 18.30 kcal Atomic # 6 Polarization: -49.09 SS G_CDS: 3.42 Total: -45.68 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -1.07 Total: -93.92 kcal Atomic # 8 Polarization: -85.39 SS G_CDS: -4.03 Total: -89.42 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 1.36 Total: -6.57 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 110.47 SS G_CDS: -0.30 Total: 110.17 kcal Total: -66.39 2.47 -63.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.430 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds