Wall clock time and date at job start Tue Mar 31 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99843 * 2 1 3 5 5 C 1.53001 * 117.49866 * 8.61877 * 4 2 1 6 6 C 1.53000 * 117.49497 * 299.99468 * 4 2 1 7 7 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 8 8 C 1.46505 * 120.00155 * 299.99972 * 7 2 1 9 9 C 1.50693 * 109.46920 * 84.99695 * 8 7 2 10 10 H 1.07998 * 120.00020 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00022 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00344 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46650 * 60.00171 * 13 11 9 15 15 H 1.48492 * 109.47423 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47339 * 300.00879 * 13 11 9 17 17 S 1.65599 * 120.00129 * 120.00096 * 7 2 1 18 18 O 1.42095 * 106.40444 * 203.53750 * 17 7 2 19 19 O 1.42097 * 106.40082 * 336.46142 * 17 7 2 20 20 C 1.76208 * 107.21833 * 89.99991 * 17 7 2 21 21 C 1.38210 * 119.97444 * 269.72555 * 20 17 7 22 22 C 1.38469 * 120.02777 * 179.76766 * 21 20 17 23 23 F 1.35097 * 120.01700 * 180.27502 * 22 21 20 24 24 C 1.38425 * 119.97002 * 0.52973 * 22 21 20 25 25 C 1.38415 * 119.95059 * 359.72152 * 24 22 21 26 26 F 1.35105 * 120.01248 * 179.97438 * 25 24 22 27 27 C 1.38203 * 119.97665 * 90.00001 * 20 17 7 28 28 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 30 30 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.08996 * 115.55031 * 154.33362 * 4 2 1 32 32 H 1.08996 * 117.49555 * 359.97438 * 5 4 2 33 33 H 1.08995 * 117.49577 * 145.02406 * 5 4 2 34 34 H 1.08998 * 117.49694 * 214.97781 * 6 4 2 35 35 H 1.08998 * 117.50118 * 359.97438 * 6 4 2 36 36 H 1.08996 * 109.47036 * 205.00291 * 8 7 2 37 37 H 1.09005 * 109.46510 * 325.00286 * 8 7 2 38 38 H 0.97003 * 120.00078 * 179.97438 * 12 11 9 39 39 H 1.08004 * 119.98519 * 0.02562 * 21 20 17 40 40 H 1.08003 * 120.02348 * 179.74450 * 24 22 21 41 41 H 1.08005 * 119.98756 * 359.97438 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.0104 -1.4540 2.1118 6 6 1.6358 -0.1493 2.6096 7 7 2.0183 -0.6907 -1.1961 8 6 1.6644 -2.0933 -1.4279 9 6 0.3224 -2.1667 -2.1095 10 1 -0.2131 -1.2593 -2.3468 11 6 -0.2213 -3.3922 -2.4313 12 7 0.4310 -4.4972 -2.1428 13 14 -1.8845 -3.4833 -3.2769 14 1 -1.8187 -2.7676 -4.5765 15 1 -2.2433 -4.9049 -3.5117 16 1 -2.9138 -2.8493 -2.4143 17 16 2.9703 0.1140 -2.2863 18 8 2.8227 -0.5648 -3.5258 19 8 2.6904 1.4971 -2.1194 20 6 4.6445 -0.1184 -1.7881 21 6 5.2389 0.7813 -0.9236 22 6 6.5529 0.5971 -0.5276 23 9 7.1320 1.4737 0.3218 24 6 7.2746 -0.4827 -1.0065 25 6 6.6798 -1.3802 -1.8763 26 9 7.3832 -2.4343 -2.3449 27 6 5.3639 -1.1971 -2.2665 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.0324 -1.1640 1.1643 32 1 -0.0303 -1.4219 1.7894 33 1 1.3253 -2.3792 2.5943 34 1 2.3620 -0.2163 3.4196 35 1 1.0069 0.7409 2.6145 36 1 2.4196 -2.5587 -2.0612 37 1 1.6164 -2.6183 -0.4738 38 1 0.0483 -5.3594 -2.3688 39 1 4.6770 1.6262 -0.5535 40 1 8.3008 -0.6249 -0.7014 41 1 4.8996 -1.8974 -2.9451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:57 Heat of formation + Delta-G solvation = -104.895004 kcal Electronic energy + Delta-G solvation = -29303.052456 eV Core-core repulsion = 24947.366061 eV Total energy + Delta-G solvation = -4355.686395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.24151 -49.16636 -38.93293 -38.39055 -36.82899 -35.39138 -34.88271 -32.47052 -31.49679 -30.59473 -29.40968 -27.08750 -23.97141 -23.92478 -23.13680 -22.63360 -21.98804 -19.61662 -18.98399 -17.86272 -17.45572 -17.12081 -16.68080 -16.62553 -16.19158 -15.97936 -15.84589 -15.73324 -15.50454 -14.87990 -14.53544 -14.46614 -14.32340 -13.42964 -13.09613 -12.93803 -12.54706 -12.45126 -12.35749 -12.28421 -12.02565 -11.77597 -11.58053 -11.49725 -11.34339 -11.20566 -11.07023 -10.89485 -10.85882 -10.59644 -10.47918 -10.09587 -10.03434 -9.74927 -9.64906 -9.43269 -9.00885 -8.45358 -8.19054 -6.08275 -4.10819 0.28145 0.70396 0.79348 2.84695 3.31839 3.36517 3.40029 3.46305 3.61970 3.95122 4.12516 4.14520 4.42656 4.45191 4.49075 4.82992 4.87603 5.03210 5.06196 5.16437 5.25339 5.30256 5.44123 5.44965 5.62429 5.67656 5.69730 5.75998 5.84446 5.92425 6.02969 6.21633 6.39261 6.40344 6.45385 6.52803 6.65739 7.07145 7.20074 7.32666 7.54554 7.88781 8.17221 8.90154 9.53187 11.00367 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.004719 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.344082 B = 5932.076656 C = 6943.483758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.183 3.817 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.170 4.170 6 C -0.185 4.185 7 N -0.969 5.969 8 C 0.255 3.745 9 C -0.523 4.523 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.275 1.275 15 H -0.288 1.288 16 H -0.276 1.276 17 S 2.680 3.320 18 O -0.930 6.930 19 O -0.966 6.966 20 C -0.620 4.620 21 C -0.066 4.066 22 C 0.107 3.893 23 F -0.129 7.129 24 C -0.147 4.147 25 C 0.112 3.888 26 F -0.126 7.126 27 C -0.059 4.059 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 8.063 7.134 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.076 3.924 3 H 0.106 0.894 4 C -0.178 4.178 5 C -0.207 4.207 6 C -0.222 4.222 7 N -0.809 5.809 8 C 0.134 3.866 9 C -0.562 4.562 10 H 0.081 0.919 11 C -0.138 4.138 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.202 1.202 17 S 2.766 3.234 18 O -0.920 6.920 19 O -0.956 6.956 20 C -0.701 4.701 21 C -0.086 4.086 22 C 0.087 3.913 23 F -0.107 7.107 24 C -0.167 4.167 25 C 0.091 3.909 26 F -0.104 7.104 27 C -0.079 4.079 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.176 0.824 40 H 0.171 0.829 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.600 8.301 6.402 14.214 hybrid contribution 0.166 -0.632 0.079 0.658 sum 9.766 7.669 6.481 14.007 Atomic orbital electron populations 1.22257 0.94113 1.04624 1.00538 1.20224 0.95618 0.94145 0.82398 0.89426 1.22663 0.99896 1.04045 0.91162 1.23078 0.99663 0.95009 1.02907 1.22962 1.04114 0.98233 0.96928 1.57564 1.61184 1.25581 1.36554 1.19141 0.96354 0.73346 0.97806 1.21428 1.03502 0.92679 1.38627 0.91854 1.24889 0.97755 0.95544 0.95623 1.69903 1.38430 0.97642 1.47405 0.86644 0.83988 0.76956 0.80389 1.20037 1.21317 1.20190 1.02657 0.72782 0.73522 0.74465 1.93634 1.84541 1.74588 1.39233 1.93529 1.83566 1.31901 1.86605 1.31663 1.27900 1.01982 1.08585 1.20955 0.93542 0.98983 0.95154 1.17286 0.91802 0.89364 0.92823 1.91546 1.84331 1.67013 1.67824 1.21254 1.02027 0.94497 0.98898 1.17327 0.90373 0.86240 0.96923 1.91565 1.78179 1.53953 1.86739 1.21107 0.92348 0.96622 0.97782 0.93197 0.92406 0.89042 0.88035 0.87564 0.89385 0.89417 0.88878 0.94575 0.93707 0.92674 0.82430 0.82902 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 6.80 37.16 0.25 -2.32 16 2 C 0.18 2.94 3.03 -67.93 -0.21 2.74 16 3 H 0.09 1.29 6.91 -51.93 -0.36 0.93 16 4 C -0.16 -2.27 4.96 -90.62 -0.45 -2.72 16 5 C -0.17 -2.37 9.57 -26.73 -0.26 -2.62 16 6 C -0.18 -2.19 9.90 -26.73 -0.26 -2.46 16 7 N -0.97 -18.17 2.73 -108.57 -0.30 -18.46 16 8 C 0.25 5.77 4.67 -5.19 -0.02 5.74 16 9 C -0.52 -13.34 7.53 -34.44 -0.26 -13.60 16 10 H 0.06 1.61 7.08 -52.49 -0.37 1.24 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 13 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 S 2.68 48.91 5.64 -107.50 -0.61 48.31 16 18 O -0.93 -20.24 16.25 -57.17 -0.93 -21.17 16 19 O -0.97 -18.04 15.84 -57.17 -0.91 -18.95 16 20 C -0.62 -9.33 5.97 -39.60 -0.24 -9.56 16 21 C -0.07 -0.87 9.50 -39.51 -0.38 -1.25 16 22 C 0.11 1.29 7.30 -39.43 -0.29 1.00 16 23 F -0.13 -1.49 17.27 2.25 0.04 -1.45 16 24 C -0.15 -1.66 10.01 -39.45 -0.39 -2.05 16 25 C 0.11 1.45 7.30 -39.43 -0.29 1.17 16 26 F -0.13 -1.66 17.27 2.25 0.04 -1.62 16 27 C -0.06 -0.86 9.50 -39.51 -0.38 -1.24 16 28 H 0.05 0.67 7.07 -51.93 -0.37 0.30 16 29 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 30 H 0.09 1.70 5.49 -51.93 -0.28 1.41 16 31 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.11 1.55 5.85 -51.93 -0.30 1.24 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.02 7.61 -51.93 -0.40 0.63 16 36 H 0.04 0.87 7.61 -51.93 -0.40 0.48 16 37 H 0.04 1.04 7.28 -51.93 -0.38 0.66 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 39 H 0.16 1.84 7.61 -52.48 -0.40 1.44 16 40 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 41 H 0.16 2.44 7.62 -52.48 -0.40 2.04 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -29.41 359.46 -9.68 -39.09 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.89 Total: 2.59 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -3.26 Total: -25.56 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.44 Total: -42.45 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.83 Total: -40.11 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 48.91 SS G_CDS: -0.61 Total: 48.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.41 -9.68 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.809 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds