Wall clock time and date at job start Tue Mar 31 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99843 * 2 1 3 5 5 C 1.53001 * 117.49866 * 8.61877 * 4 2 1 6 6 C 1.53000 * 117.49497 * 299.99468 * 4 2 1 7 7 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 8 8 C 1.46505 * 120.00155 * 299.99972 * 7 2 1 9 9 C 1.50693 * 109.46920 * 84.99695 * 8 7 2 10 10 H 1.07998 * 120.00020 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00022 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00344 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46650 * 60.00171 * 13 11 9 15 15 H 1.48492 * 109.47423 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47339 * 300.00879 * 13 11 9 17 17 S 1.65599 * 120.00129 * 120.00096 * 7 2 1 18 18 O 1.42095 * 106.40444 * 203.53750 * 17 7 2 19 19 O 1.42097 * 106.40082 * 336.46142 * 17 7 2 20 20 C 1.76208 * 107.21833 * 89.99991 * 17 7 2 21 21 C 1.38210 * 119.97444 * 269.72555 * 20 17 7 22 22 C 1.38469 * 120.02777 * 179.76766 * 21 20 17 23 23 F 1.35097 * 120.01700 * 180.27502 * 22 21 20 24 24 C 1.38425 * 119.97002 * 0.52973 * 22 21 20 25 25 C 1.38415 * 119.95059 * 359.72152 * 24 22 21 26 26 F 1.35105 * 120.01248 * 179.97438 * 25 24 22 27 27 C 1.38203 * 119.97665 * 90.00001 * 20 17 7 28 28 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 30 30 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.08996 * 115.55031 * 154.33362 * 4 2 1 32 32 H 1.08996 * 117.49555 * 359.97438 * 5 4 2 33 33 H 1.08995 * 117.49577 * 145.02406 * 5 4 2 34 34 H 1.08998 * 117.49694 * 214.97781 * 6 4 2 35 35 H 1.08998 * 117.50118 * 359.97438 * 6 4 2 36 36 H 1.08996 * 109.47036 * 205.00291 * 8 7 2 37 37 H 1.09005 * 109.46510 * 325.00286 * 8 7 2 38 38 H 0.97003 * 120.00078 * 179.97438 * 12 11 9 39 39 H 1.08004 * 119.98519 * 0.02562 * 21 20 17 40 40 H 1.08003 * 120.02348 * 179.74450 * 24 22 21 41 41 H 1.08005 * 119.98756 * 359.97438 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.0104 -1.4540 2.1118 6 6 1.6358 -0.1493 2.6096 7 7 2.0183 -0.6907 -1.1961 8 6 1.6644 -2.0933 -1.4279 9 6 0.3224 -2.1667 -2.1095 10 1 -0.2131 -1.2593 -2.3468 11 6 -0.2213 -3.3922 -2.4313 12 7 0.4310 -4.4972 -2.1428 13 14 -1.8845 -3.4833 -3.2769 14 1 -1.8187 -2.7676 -4.5765 15 1 -2.2433 -4.9049 -3.5117 16 1 -2.9138 -2.8493 -2.4143 17 16 2.9703 0.1140 -2.2863 18 8 2.8227 -0.5648 -3.5258 19 8 2.6904 1.4971 -2.1194 20 6 4.6445 -0.1184 -1.7881 21 6 5.2389 0.7813 -0.9236 22 6 6.5529 0.5971 -0.5276 23 9 7.1320 1.4737 0.3218 24 6 7.2746 -0.4827 -1.0065 25 6 6.6798 -1.3802 -1.8763 26 9 7.3832 -2.4343 -2.3449 27 6 5.3639 -1.1971 -2.2665 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.0324 -1.1640 1.1643 32 1 -0.0303 -1.4219 1.7894 33 1 1.3253 -2.3792 2.5943 34 1 2.3620 -0.2163 3.4196 35 1 1.0069 0.7409 2.6145 36 1 2.4196 -2.5587 -2.0612 37 1 1.6164 -2.6183 -0.4738 38 1 0.0483 -5.3594 -2.3688 39 1 4.6770 1.6262 -0.5535 40 1 8.3008 -0.6249 -0.7014 41 1 4.8996 -1.8974 -2.9451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069599681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:56 Heat of formation + Delta-G solvation = -121.397423 kcal Electronic energy + Delta-G solvation = -29303.768054 eV Core-core repulsion = 24947.366061 eV Total energy + Delta-G solvation = -4356.401993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.20849 -50.17767 -40.00241 -39.63122 -38.37067 -36.94760 -36.34103 -34.37695 -32.56250 -31.65698 -30.85001 -28.87942 -25.36079 -25.05251 -24.36811 -24.15266 -23.04304 -20.88120 -20.17066 -19.29530 -18.63437 -18.49464 -18.41959 -17.72994 -17.28014 -17.18395 -17.12918 -16.88879 -16.49002 -16.38360 -16.18633 -15.53854 -15.50484 -14.93861 -14.39259 -14.25636 -14.16599 -13.60429 -13.56419 -13.52588 -13.38729 -13.28178 -13.07263 -12.99055 -12.89047 -12.76046 -12.66372 -12.35009 -12.29218 -12.07439 -11.98838 -11.70673 -11.51822 -11.10527 -10.70105 -10.65441 -10.48666 -10.05944 -9.78271 -8.11762 -6.19004 -0.85832 -0.58333 -0.34502 1.43366 1.46195 1.52195 1.72569 2.11087 2.46171 2.58476 2.72717 2.83638 3.06856 3.21038 3.44462 3.51900 3.55939 3.76779 3.89117 3.93058 3.98660 4.24983 4.27360 4.40319 4.44005 4.55002 4.65060 4.67756 4.68865 4.71477 4.92282 5.04892 5.10752 5.28851 5.33351 5.40068 5.42343 5.42768 5.52795 5.70460 5.83542 5.97661 6.20528 6.87391 7.47283 8.95989 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.004719 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.344082 B = 5932.076656 C = 6943.483758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.175 3.825 3 H 0.106 0.894 4 C -0.173 4.173 5 C -0.186 4.186 6 C -0.151 4.151 7 N -0.974 5.974 8 C 0.273 3.727 9 C -0.527 4.527 10 H 0.058 0.942 11 C 0.016 3.984 12 N -0.925 5.925 13 Si 0.944 3.056 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.264 1.264 17 S 2.690 3.310 18 O -0.976 6.976 19 O -0.973 6.973 20 C -0.623 4.623 21 C -0.063 4.063 22 C 0.116 3.884 23 F -0.120 7.120 24 C -0.124 4.124 25 C 0.109 3.891 26 F -0.127 7.127 27 C -0.075 4.075 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.015 0.985 37 H 0.037 0.963 38 H 0.263 0.737 39 H 0.173 0.827 40 H 0.189 0.811 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.031 9.656 9.017 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.124 0.876 4 C -0.193 4.193 5 C -0.223 4.223 6 C -0.189 4.189 7 N -0.813 5.813 8 C 0.150 3.850 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.183 4.183 12 N -0.566 5.566 13 Si 0.770 3.230 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.189 1.189 17 S 2.781 3.219 18 O -0.966 6.966 19 O -0.963 6.963 20 C -0.710 4.710 21 C -0.083 4.083 22 C 0.095 3.905 23 F -0.098 7.098 24 C -0.143 4.143 25 C 0.089 3.911 26 F -0.105 7.105 27 C -0.095 4.095 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.033 0.967 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.191 0.809 40 H 0.206 0.794 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.806 9.922 8.288 16.849 hybrid contribution -0.103 -1.055 -0.457 1.155 sum 10.702 8.867 7.831 15.953 Atomic orbital electron populations 1.22221 0.94578 1.03134 1.01402 1.20491 0.95376 0.95007 0.82150 0.87609 1.22584 0.99815 1.05274 0.91620 1.23082 0.99061 0.96437 1.03714 1.23066 1.03309 0.97213 0.95269 1.57408 1.62346 1.23979 1.37560 1.18640 0.94466 0.75379 0.96478 1.21749 1.04555 0.92386 1.37966 0.92357 1.25581 1.00763 0.95483 0.96492 1.69998 1.39809 0.97951 1.48806 0.85823 0.80925 0.76984 0.79275 1.20523 1.20939 1.18905 1.01891 0.73590 0.72897 0.73551 1.93575 1.85813 1.75358 1.41903 1.93507 1.84372 1.31856 1.86579 1.30907 1.25758 1.03535 1.10759 1.21122 0.94353 0.98671 0.94192 1.17176 0.91245 0.89479 0.92584 1.91578 1.84053 1.66744 1.67462 1.21550 1.03290 0.92800 0.96664 1.17282 0.89693 0.86723 0.97417 1.91566 1.77975 1.54111 1.86867 1.21074 0.93552 0.96627 0.98255 0.89964 0.93870 0.91657 0.88204 0.88607 0.89521 0.87363 0.87360 0.96726 0.94468 0.92760 0.80915 0.79375 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 6.80 71.98 0.49 -4.54 16 2 C 0.18 5.53 3.03 44.99 0.14 5.67 16 3 H 0.11 2.93 6.91 -2.39 -0.02 2.92 16 4 C -0.17 -4.75 4.96 -10.79 -0.05 -4.81 16 5 C -0.19 -5.00 9.57 30.60 0.29 -4.71 16 6 C -0.15 -3.12 9.90 30.60 0.30 -2.82 16 7 N -0.97 -37.27 2.73 -497.40 -1.36 -38.63 16 8 C 0.27 12.88 4.67 85.63 0.40 13.28 16 9 C -0.53 -27.79 7.53 25.60 0.19 -27.59 16 10 H 0.06 3.06 7.08 -2.91 -0.02 3.04 16 11 C 0.02 0.86 5.46 84.66 0.46 1.33 16 12 N -0.93 -52.61 13.29 21.45 0.28 -52.32 16 13 Si 0.94 43.41 29.54 68.60 2.03 45.43 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 S 2.69 100.15 5.64 -56.49 -0.32 99.83 16 18 O -0.98 -44.57 16.25 -128.00 -2.08 -46.65 16 19 O -0.97 -36.04 15.84 -128.00 -2.03 -38.07 16 20 C -0.62 -18.52 5.97 22.25 0.13 -18.38 16 21 C -0.06 -1.53 9.50 22.32 0.21 -1.31 16 22 C 0.12 2.39 7.30 22.37 0.16 2.55 16 23 F -0.12 -2.31 17.27 44.97 0.78 -1.53 16 24 C -0.12 -2.37 10.01 22.36 0.22 -2.15 16 25 C 0.11 2.68 7.30 22.37 0.16 2.84 16 26 F -0.13 -3.17 17.27 44.97 0.78 -2.39 16 27 C -0.07 -2.21 9.50 22.32 0.21 -2.00 16 28 H 0.08 2.07 7.07 -2.39 -0.02 2.06 16 29 H 0.04 1.49 7.93 -2.39 -0.02 1.47 16 30 H 0.06 2.47 5.49 -2.39 -0.01 2.46 16 31 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.10 2.77 5.85 -2.39 -0.01 2.75 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 1.94 7.61 -2.39 -0.02 1.92 16 36 H 0.01 0.75 7.61 -2.39 -0.02 0.74 16 37 H 0.04 1.80 7.28 -2.38 -0.02 1.78 16 38 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.17 3.58 7.61 -2.91 -0.02 3.55 16 40 H 0.19 2.30 8.06 -2.91 -0.02 2.27 16 41 H 0.15 4.76 7.62 -2.91 -0.02 4.74 16 Total: -1.00 -64.51 359.46 2.48 -62.03 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.07 Total: 14.96 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 3.33 Total: -42.65 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -1.07 Total: -90.96 kcal Atomic # 8 Polarization: -80.61 SS G_CDS: -4.11 Total: -84.72 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 1.55 Total: -3.92 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 100.15 SS G_CDS: -0.32 Total: 99.83 kcal Total: -64.51 2.48 -62.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.370 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds