Wall clock time and date at job start Tue Mar 31 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47473 * 2 1 4 4 C 1.53005 * 109.46773 * 239.99950 * 2 1 3 5 5 C 1.53004 * 117.49970 * 128.62690 * 4 2 1 6 6 C 1.52998 * 117.50116 * 60.00366 * 4 2 1 7 7 N 1.46503 * 109.46979 * 120.00203 * 2 1 3 8 8 C 1.46499 * 120.00186 * 59.99465 * 7 2 1 9 9 C 1.50692 * 109.47302 * 275.00288 * 8 7 2 10 10 H 1.08001 * 119.99907 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00027 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99805 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47261 * 90.00097 * 13 11 9 15 15 H 1.48505 * 109.46946 * 209.99769 * 13 11 9 16 16 H 1.48498 * 109.47267 * 329.99786 * 13 11 9 17 17 S 1.65594 * 119.99513 * 239.99565 * 7 2 1 18 18 O 1.42108 * 106.39951 * 156.45975 * 17 7 2 19 19 O 1.42100 * 106.40610 * 23.54345 * 17 7 2 20 20 C 1.76195 * 107.22123 * 269.99668 * 17 7 2 21 21 C 1.38211 * 119.97791 * 269.73034 * 20 17 7 22 22 C 1.38472 * 120.02463 * 180.27081 * 21 20 17 23 23 F 1.35097 * 120.01155 * 180.02562 * 22 21 20 24 24 C 1.38417 * 119.97705 * 0.02562 * 22 21 20 25 25 C 1.38423 * 119.95096 * 359.97438 * 24 22 21 26 26 F 1.35095 * 120.01527 * 179.97438 * 25 24 22 27 27 C 1.38215 * 119.97448 * 90.00282 * 20 17 7 28 28 H 1.09003 * 109.46825 * 300.00651 * 1 2 3 29 29 H 1.09003 * 109.47052 * 59.99559 * 1 2 3 30 30 H 1.08998 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.09004 * 115.54597 * 274.32990 * 4 2 1 32 32 H 1.08999 * 117.49184 * 359.97438 * 5 4 2 33 33 H 1.08995 * 117.49844 * 145.01564 * 5 4 2 34 34 H 1.09002 * 117.50054 * 214.98123 * 6 4 2 35 35 H 1.09002 * 117.49561 * 359.97438 * 6 4 2 36 36 H 1.09002 * 109.46922 * 35.00376 * 8 7 2 37 37 H 1.09001 * 109.46918 * 154.99780 * 8 7 2 38 38 H 0.96999 * 120.00176 * 180.02562 * 12 11 9 39 39 H 1.07993 * 119.98298 * 0.25126 * 21 20 17 40 40 H 1.07998 * 120.02696 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.98123 * 359.72563 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.0742 0.0050 -2.1118 6 6 1.6357 -0.1496 -2.6097 7 7 2.0183 -0.6907 1.1962 8 6 1.6643 -2.0932 1.4280 9 6 0.3224 -2.1665 2.1098 10 1 -0.2131 -1.2591 2.3470 11 6 -0.2214 -3.3920 2.4316 12 7 0.4308 -4.4969 2.1431 13 14 -1.8852 -3.4829 3.2760 14 1 -2.9573 -3.5548 2.2510 15 1 -1.9391 -4.6934 4.1345 16 1 -2.0818 -2.2727 4.1138 17 16 2.9704 0.1141 2.2861 18 8 2.8227 -0.5646 3.5259 19 8 2.6904 1.4972 2.1192 20 6 4.6444 -0.1183 1.7880 21 6 5.3656 -1.1939 2.2710 22 6 6.6830 -1.3744 1.8846 23 9 7.3876 -2.4261 2.3564 24 6 7.2778 -0.4769 1.0147 25 6 6.5545 0.5999 0.5315 26 9 7.1339 1.4770 -0.3171 27 6 5.2371 0.7782 0.9190 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.1266 -1.8046 -1.1642 32 1 3.3909 0.9969 -1.7893 33 1 3.8415 -0.6003 -2.5942 34 1 1.4567 -0.8566 -3.4197 35 1 1.0061 0.7402 -2.6146 36 1 1.6164 -2.6183 0.4740 37 1 2.4196 -2.5586 2.0614 38 1 0.0482 -5.3591 2.3692 39 1 4.9016 -1.8936 2.9502 40 1 8.3053 -0.6167 0.7131 41 1 4.6726 1.6182 0.5422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:03 Heat of formation + Delta-G solvation = -108.013647 kcal Electronic energy + Delta-G solvation = -29377.687210 eV Core-core repulsion = 25021.865581 eV Total energy + Delta-G solvation = -4355.821629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.23428 -49.15918 -38.92186 -38.22479 -36.82557 -35.39777 -35.03645 -32.50095 -31.48730 -30.58519 -29.62652 -27.05386 -23.93432 -23.55753 -23.14157 -22.76081 -22.06862 -19.72248 -19.15223 -18.02071 -17.46188 -17.25580 -16.68605 -16.57569 -16.18947 -15.93992 -15.82032 -15.63142 -15.49607 -14.72153 -14.52923 -14.43721 -14.30020 -13.47663 -13.06988 -12.97164 -12.50251 -12.46238 -12.32319 -12.28448 -12.16370 -11.85179 -11.71306 -11.58160 -11.40205 -11.25402 -11.07219 -11.02222 -10.87166 -10.56100 -10.40833 -10.22503 -9.96449 -9.80491 -9.66260 -9.48306 -8.99534 -8.47206 -8.18793 -6.09842 -4.12382 0.29440 0.71734 0.79590 2.85780 3.29664 3.37132 3.41063 3.46189 3.62841 3.95873 4.02989 4.13639 4.41994 4.45830 4.49833 4.83184 4.84296 4.95289 5.04699 5.12354 5.19508 5.26819 5.44900 5.49072 5.57847 5.63607 5.69293 5.75341 5.77441 5.91932 6.01143 6.10704 6.25047 6.34473 6.46484 6.53204 6.65862 7.09301 7.15420 7.30459 7.53135 7.87639 8.15035 8.89081 9.51970 10.98868 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.004776 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.558781 B = 5860.974381 C = 6933.206253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.184 3.816 3 H 0.084 0.916 4 C -0.155 4.155 5 C -0.190 4.190 6 C -0.173 4.173 7 N -0.969 5.969 8 C 0.254 3.746 9 C -0.523 4.523 10 H 0.065 0.935 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 S 2.680 3.320 18 O -0.930 6.930 19 O -0.966 6.966 20 C -0.618 4.618 21 C -0.059 4.059 22 C 0.112 3.888 23 F -0.126 7.126 24 C -0.147 4.147 25 C 0.108 3.892 26 F -0.129 7.129 27 C -0.065 4.065 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.263 0.737 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.228 8.319 -7.095 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.077 3.923 3 H 0.102 0.898 4 C -0.175 4.175 5 C -0.227 4.227 6 C -0.210 4.210 7 N -0.808 5.808 8 C 0.132 3.868 9 C -0.562 4.562 10 H 0.083 0.917 11 C -0.139 4.139 12 N -0.534 5.534 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 S 2.766 3.234 18 O -0.920 6.920 19 O -0.956 6.956 20 C -0.700 4.700 21 C -0.078 4.078 22 C 0.091 3.909 23 F -0.105 7.105 24 C -0.167 4.167 25 C 0.088 3.912 26 F -0.107 7.107 27 C -0.084 4.084 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.181 0.819 40 H 0.171 0.829 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.060 8.565 -6.358 14.663 hybrid contribution 0.137 -0.622 -0.132 0.650 sum 10.197 7.943 -6.490 14.464 Atomic orbital electron populations 1.22095 0.93669 1.04662 1.00485 1.20280 0.95820 0.93859 0.82353 0.89823 1.22815 1.02486 1.00831 0.91366 1.23038 0.92696 1.01809 1.05189 1.22869 0.97512 1.03206 0.97459 1.57534 1.61212 1.25547 1.36543 1.19154 0.96541 0.73447 0.97621 1.21473 1.03422 0.92768 1.38550 0.91708 1.24900 0.97819 0.95532 0.95626 1.69905 1.38369 0.97652 1.47515 0.86560 0.83887 0.77802 0.79610 1.20655 1.21188 1.19669 1.02634 0.72782 0.73517 0.74439 1.93635 1.84566 1.74596 1.39224 1.93528 1.83600 1.31895 1.86623 1.31632 1.27846 1.02051 1.08453 1.21095 0.92330 0.96599 0.97812 1.17319 0.90332 0.86304 0.96901 1.91561 1.78127 1.54140 1.86632 1.21244 1.02018 0.94508 0.98890 1.17270 0.91728 0.89387 0.92845 1.91543 1.84335 1.66971 1.67886 1.20916 0.93487 0.98901 0.95139 0.92472 0.93174 0.89405 0.86487 0.89184 0.89230 0.89002 0.88763 0.94015 0.94367 0.92695 0.81876 0.82930 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.05 37.16 0.30 -2.18 16 2 C 0.18 2.96 2.86 -67.93 -0.19 2.77 16 3 H 0.08 1.24 6.67 -51.93 -0.35 0.89 16 4 C -0.16 -2.22 5.17 -90.62 -0.47 -2.69 16 5 C -0.19 -2.26 10.18 -26.73 -0.27 -2.53 16 6 C -0.17 -2.04 9.73 -26.73 -0.26 -2.30 16 7 N -0.97 -18.18 2.73 -108.57 -0.30 -18.48 16 8 C 0.25 5.72 4.66 -5.20 -0.02 5.70 16 9 C -0.52 -13.35 7.53 -34.44 -0.26 -13.61 16 10 H 0.06 1.65 7.08 -52.49 -0.37 1.28 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.90 -24.73 13.29 55.43 0.74 -23.99 16 13 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 S 2.68 49.17 5.64 -107.50 -0.61 48.56 16 18 O -0.93 -20.29 16.25 -57.17 -0.93 -21.21 16 19 O -0.97 -18.14 15.85 -57.17 -0.91 -19.04 16 20 C -0.62 -9.35 5.97 -39.60 -0.24 -9.58 16 21 C -0.06 -0.86 9.50 -39.50 -0.38 -1.24 16 22 C 0.11 1.46 7.30 -39.43 -0.29 1.17 16 23 F -0.13 -1.66 17.27 2.25 0.04 -1.62 16 24 C -0.15 -1.66 10.01 -39.45 -0.39 -2.05 16 25 C 0.11 1.29 7.30 -39.43 -0.29 1.01 16 26 F -0.13 -1.49 17.27 2.25 0.04 -1.45 16 27 C -0.06 -0.85 9.50 -39.50 -0.38 -1.22 16 28 H 0.06 0.98 7.93 -51.93 -0.41 0.57 16 29 H 0.05 0.68 7.29 -51.93 -0.38 0.30 16 30 H 0.09 1.65 6.65 -51.93 -0.35 1.31 16 31 H 0.12 1.86 6.54 -51.93 -0.34 1.53 16 32 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.02 7.61 -51.93 -0.39 0.63 16 36 H 0.04 0.96 6.39 -51.93 -0.33 0.62 16 37 H 0.04 0.92 7.61 -51.93 -0.40 0.52 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.16 2.44 7.61 -52.49 -0.40 2.04 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.16 1.83 7.62 -52.49 -0.40 1.43 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -29.32 362.03 -9.66 -38.98 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.93 Total: 2.15 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -3.23 Total: -25.17 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.44 Total: -42.47 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.83 Total: -40.26 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 49.17 SS G_CDS: -0.61 Total: 48.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.32 -9.66 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.036 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds