Wall clock time and date at job start Tue Mar 31 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47067 * 2 1 4 4 C 1.53006 * 109.46763 * 120.00223 * 2 1 3 5 5 C 1.53000 * 117.49952 * 8.62092 * 4 2 1 6 6 C 1.53003 * 117.49579 * 299.99686 * 4 2 1 7 7 N 1.46501 * 109.46995 * 239.99882 * 2 1 3 8 8 C 1.46498 * 120.00066 * 300.00182 * 7 2 1 9 9 C 1.50697 * 109.47066 * 275.00107 * 8 7 2 10 10 H 1.07997 * 120.00187 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00045 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99662 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00017 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47233 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.46926 * 120.00031 * 13 11 9 16 16 H 1.48498 * 109.47174 * 239.99846 * 13 11 9 17 17 S 1.65596 * 119.99850 * 120.00038 * 7 2 1 18 18 O 1.42100 * 106.40184 * 336.46208 * 17 7 2 19 19 O 1.42098 * 106.40422 * 203.53771 * 17 7 2 20 20 C 1.76204 * 107.21685 * 90.00192 * 17 7 2 21 21 C 1.38224 * 119.99114 * 114.97830 * 20 17 7 22 22 C 1.38186 * 120.05276 * 180.02562 * 21 20 17 23 23 C 1.38492 * 120.02401 * 359.97438 * 22 21 20 24 24 F 1.35107 * 120.01136 * 180.02562 * 23 22 21 25 25 C 1.38396 * 119.97620 * 359.79120 * 23 22 21 26 26 C 1.38445 * 119.94704 * 0.43906 * 25 23 22 27 27 F 1.35104 * 120.01039 * 179.81237 * 26 25 23 28 28 H 1.08994 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47029 * 299.99964 * 1 2 3 30 30 H 1.08996 * 109.46886 * 59.99581 * 1 2 3 31 31 H 1.08995 * 115.54460 * 154.33180 * 4 2 1 32 32 H 1.09002 * 117.49945 * 0.02562 * 5 4 2 33 33 H 1.08992 * 117.49735 * 145.02130 * 5 4 2 34 34 H 1.08998 * 117.49477 * 214.97773 * 6 4 2 35 35 H 1.08996 * 117.49934 * 359.97438 * 6 4 2 36 36 H 1.08999 * 109.47271 * 35.00231 * 8 7 2 37 37 H 1.09000 * 109.47271 * 154.99651 * 8 7 2 38 38 H 0.97000 * 119.99555 * 179.97438 * 12 11 9 39 39 H 1.08000 * 119.97482 * 0.02562 * 21 20 17 40 40 H 1.07999 * 119.98603 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.03048 * 180.25272 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.0104 -1.4542 2.1117 6 6 1.6357 -0.1495 2.6096 7 7 2.0184 -0.6906 -1.1962 8 6 1.6644 -2.0932 -1.4280 9 6 2.6338 -2.9838 -0.6943 10 1 3.4337 -2.5486 -0.1138 11 6 2.5000 -4.3542 -0.7651 12 7 1.5261 -4.8842 -1.4724 13 14 3.7020 -5.4582 0.1438 14 1 4.6978 -4.6216 0.8603 15 1 2.9624 -6.2954 1.1222 16 1 4.4015 -6.3352 -0.8292 17 16 2.9704 0.1141 -2.2862 18 8 2.6904 1.4972 -2.1192 19 8 2.8228 -0.5646 -3.5259 20 6 4.6445 -0.1183 -1.7880 21 6 5.5138 -0.8268 -2.5961 22 6 6.8268 -1.0103 -2.2064 23 6 7.2733 -0.4840 -1.0057 24 9 8.5573 -0.6631 -0.6252 25 6 6.4051 0.2297 -0.1981 26 6 5.0887 0.4088 -0.5873 27 9 4.2390 1.1021 0.2019 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 3.0323 -1.1641 1.1642 32 1 -0.0303 -1.4228 1.7888 33 1 1.3252 -2.3794 2.5941 34 1 2.3619 -0.2167 3.4197 35 1 1.0068 0.7407 2.6146 36 1 0.6539 -2.2780 -1.0635 37 1 1.7104 -2.3078 -2.4957 38 1 1.4322 -5.8483 -1.5225 39 1 5.1666 -1.2372 -3.5328 40 1 7.5053 -1.5637 -2.8387 41 1 6.7535 0.6440 0.7365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069601977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:08 Heat of formation + Delta-G solvation = -101.739306 kcal Electronic energy + Delta-G solvation = -30284.450531 eV Core-core repulsion = 25928.900978 eV Total energy + Delta-G solvation = -4355.549553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.23768 -49.18541 -38.72206 -38.25457 -36.74897 -35.39665 -34.72098 -32.56257 -31.18772 -30.57206 -29.49631 -26.84583 -24.35328 -23.53740 -23.18366 -22.25899 -21.83449 -19.41961 -18.63133 -18.24269 -17.50881 -17.29052 -16.90164 -16.48799 -16.09145 -15.92260 -15.64683 -15.43314 -14.92867 -14.65441 -14.49702 -14.33349 -14.03734 -13.64181 -13.41324 -13.00087 -12.70374 -12.46286 -12.20822 -11.95728 -11.79934 -11.72340 -11.57387 -11.52270 -11.44845 -11.16352 -10.96320 -10.88667 -10.75917 -10.69481 -10.48733 -10.15483 -9.78833 -9.54654 -9.35452 -9.28650 -9.01181 -8.49639 -8.12889 -6.12457 -4.16322 0.48403 0.92544 0.95001 3.05603 3.20881 3.30317 3.31335 3.47694 3.65788 4.09780 4.25428 4.34304 4.35766 4.41583 4.67056 4.87625 5.16786 5.21949 5.22966 5.32177 5.40866 5.52988 5.61731 5.63668 5.73399 5.79251 5.83714 5.90714 5.91866 6.03979 6.05641 6.29726 6.38375 6.57786 6.59909 6.65717 6.73830 6.85255 7.34217 7.39362 7.60242 7.84534 8.13826 8.85836 9.48330 10.95913 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.008631 B = 0.006796 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.281520 B = 4119.280661 C = 5128.814389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.180 3.820 3 H 0.092 0.908 4 C -0.135 4.135 5 C -0.164 4.164 6 C -0.195 4.195 7 N -0.969 5.969 8 C 0.244 3.756 9 C -0.528 4.528 10 H 0.061 0.939 11 C 0.068 3.932 12 N -0.888 5.888 13 Si 0.885 3.115 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 S 2.688 3.312 18 O -0.967 6.967 19 O -0.949 6.949 20 C -0.711 4.711 21 C 0.044 3.956 22 C -0.186 4.186 23 C 0.174 3.826 24 F -0.128 7.128 25 C -0.216 4.216 26 C 0.229 3.771 27 F -0.111 7.111 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.263 0.737 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 9.324 3.000 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.074 3.926 3 H 0.110 0.890 4 C -0.155 4.155 5 C -0.201 4.201 6 C -0.233 4.233 7 N -0.808 5.808 8 C 0.122 3.878 9 C -0.567 4.567 10 H 0.079 0.921 11 C -0.135 4.135 12 N -0.527 5.527 13 Si 0.713 3.287 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.210 1.210 17 S 2.775 3.225 18 O -0.957 6.957 19 O -0.940 6.940 20 C -0.794 4.794 21 C 0.025 3.975 22 C -0.205 4.205 23 C 0.154 3.846 24 F -0.106 7.106 25 C -0.236 4.236 26 C 0.208 3.792 27 F -0.089 7.089 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.181 0.819 40 H 0.167 0.833 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.470 9.629 2.257 11.302 hybrid contribution 1.527 -1.210 1.407 2.403 sum 6.997 8.420 3.664 11.544 Atomic orbital electron populations 1.22216 0.95194 1.03165 1.01275 1.20268 0.94330 0.94745 0.83307 0.88992 1.22573 1.00679 1.02398 0.89832 1.22919 0.98886 0.94863 1.03414 1.22991 1.04359 0.97956 0.97961 1.57456 1.62098 1.25006 1.36244 1.19284 0.97549 0.72715 0.98216 1.21525 1.13543 0.90910 1.30749 0.92102 1.24860 0.95412 0.97942 0.95303 1.69927 1.30992 1.11726 1.40067 0.86657 0.81348 0.80958 0.79785 1.19888 1.20962 1.20953 1.02161 0.72970 0.73217 0.74143 1.93552 1.83662 1.31806 1.86685 1.93558 1.85111 1.75087 1.40205 1.31461 1.29026 1.14473 1.04444 1.20734 0.90804 0.88167 0.97758 1.21294 0.97814 1.04616 0.96790 1.17490 0.78513 0.95285 0.93337 1.91545 1.34891 1.93088 1.91114 1.20980 0.92814 1.06435 1.03368 1.16581 0.87020 0.88822 0.86810 1.91628 1.69192 1.75610 1.72490 0.90720 0.92112 0.92614 0.87237 0.88521 0.89423 0.89696 0.89377 0.93410 0.92971 0.92741 0.81922 0.83264 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 7.76 37.16 0.29 -2.19 16 2 C 0.18 3.11 2.33 -67.92 -0.16 2.95 16 3 H 0.09 1.54 5.87 -51.93 -0.30 1.23 16 4 C -0.14 -2.29 4.11 -90.61 -0.37 -2.66 16 5 C -0.16 -2.62 9.57 -26.73 -0.26 -2.88 16 6 C -0.19 -2.73 9.90 -26.73 -0.26 -2.99 16 7 N -0.97 -19.05 2.73 -108.57 -0.30 -19.35 16 8 C 0.24 5.62 5.13 -5.20 -0.03 5.60 16 9 C -0.53 -12.94 8.22 -34.44 -0.28 -13.22 16 10 H 0.06 1.47 6.27 -52.49 -0.33 1.14 16 11 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 13 Si 0.88 20.31 29.54 -169.99 -5.02 15.29 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 S 2.69 51.71 5.34 -107.50 -0.57 51.14 16 18 O -0.97 -19.18 15.99 -57.17 -0.91 -20.09 16 19 O -0.95 -20.19 15.52 -57.17 -0.89 -21.08 16 20 C -0.71 -12.18 5.91 -39.51 -0.23 -12.41 16 21 C 0.04 0.68 9.54 -39.61 -0.38 0.30 16 22 C -0.19 -2.46 10.02 -39.51 -0.40 -2.85 16 23 C 0.17 2.34 7.30 -39.43 -0.29 2.06 16 24 F -0.13 -1.64 17.27 2.25 0.04 -1.60 16 25 C -0.22 -2.97 10.01 -39.45 -0.39 -3.37 16 26 C 0.23 3.65 7.21 -39.43 -0.28 3.36 16 27 F -0.11 -1.78 13.95 2.25 0.03 -1.74 16 28 H 0.07 1.24 5.53 -51.93 -0.29 0.95 16 29 H 0.06 0.79 7.07 -51.93 -0.37 0.42 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.11 2.06 6.51 -51.93 -0.34 1.72 16 32 H 0.10 1.48 5.85 -51.93 -0.30 1.18 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.10 7.61 -51.93 -0.40 0.71 16 36 H 0.05 1.14 6.45 -51.93 -0.33 0.81 16 37 H 0.05 1.32 6.91 -51.93 -0.36 0.96 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.16 2.32 7.33 -52.49 -0.38 1.93 16 40 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -28.93 351.65 -9.38 -38.31 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.65 Total: 4.05 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -3.14 Total: -26.65 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.44 Total: -42.92 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.80 Total: -41.17 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.07 Total: -3.35 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 51.71 SS G_CDS: -0.57 Total: 51.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.93 -9.38 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069601977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.429 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds