Wall clock time and date at job start Tue Mar 31 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47138 * 2 1 4 4 C 1.52998 * 109.47480 * 239.99760 * 2 1 3 5 5 C 1.53000 * 117.49463 * 356.38211 * 4 2 1 6 6 C 1.52997 * 60.00347 * 107.48750 * 5 4 2 7 7 N 1.46508 * 109.47045 * 119.99731 * 2 1 3 8 8 C 1.46500 * 119.99660 * 60.00125 * 7 2 1 9 9 C 1.50697 * 109.47037 * 84.99816 * 8 7 2 10 10 H 1.08001 * 120.00240 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99892 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99803 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00184 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46803 * 89.99860 * 13 11 9 15 15 H 1.48499 * 109.47022 * 209.99775 * 13 11 9 16 16 H 1.48492 * 109.47121 * 329.99863 * 13 11 9 17 17 S 1.65597 * 120.00132 * 239.99965 * 7 2 1 18 18 O 1.42099 * 106.40220 * 203.53948 * 17 7 2 19 19 O 1.42103 * 106.40217 * 336.46160 * 17 7 2 20 20 C 1.76202 * 107.21566 * 90.00186 * 17 7 2 21 21 C 1.38231 * 119.98583 * 114.72471 * 20 17 7 22 22 C 1.38193 * 120.04670 * 179.72457 * 21 20 17 23 23 C 1.38488 * 120.02510 * 0.54550 * 22 21 20 24 24 F 1.35104 * 120.01170 * 179.74564 * 23 22 21 25 25 C 1.38400 * 119.97636 * 359.73443 * 23 22 21 26 26 C 1.38438 * 119.94827 * 359.97438 * 25 23 22 27 27 F 1.35102 * 120.01388 * 179.97438 * 26 25 23 28 28 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47037 * 300.00272 * 1 2 3 30 30 H 1.08998 * 109.46614 * 60.00189 * 1 2 3 31 31 H 1.08990 * 115.56470 * 210.69261 * 4 2 1 32 32 H 1.09002 * 117.49696 * 214.97963 * 5 4 2 33 33 H 1.09002 * 117.50343 * 359.97438 * 5 4 2 34 34 H 1.08999 * 117.49685 * 252.51237 * 6 5 4 35 35 H 1.08997 * 117.50044 * 107.48590 * 6 5 4 36 36 H 1.08994 * 109.47073 * 204.99810 * 8 7 2 37 37 H 1.09000 * 109.47644 * 325.00138 * 8 7 2 38 38 H 0.97003 * 119.99896 * 179.97438 * 12 11 9 39 39 H 1.07997 * 119.97412 * 359.97438 * 21 20 17 40 40 H 1.08000 * 119.98669 * 180.25348 * 22 21 20 41 41 H 1.08001 * 120.02438 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 0.9986 -1.3542 -2.1741 6 6 1.7348 -0.0847 -2.6066 7 7 2.0184 -0.6906 1.1963 8 6 1.6644 -2.0932 1.4281 9 6 2.6338 -2.9837 0.6944 10 1 3.4338 -2.5485 0.1139 11 6 2.5000 -4.3542 0.7652 12 7 3.3457 -5.1313 0.1245 13 14 1.1167 -5.1070 1.7698 14 1 -0.0806 -5.2835 0.9092 15 1 1.5481 -6.4275 2.2946 16 1 0.7831 -4.2086 2.9040 17 16 2.9704 0.1142 2.2863 18 8 3.7118 -0.8789 2.9816 19 8 3.5794 1.1830 1.5749 20 6 1.8960 0.8535 3.4711 21 6 1.9284 0.4360 4.7884 22 6 1.0903 1.0189 5.7199 23 6 0.2090 2.0143 5.3321 24 9 -0.6138 2.5804 6.2419 25 6 0.1717 2.4291 4.0122 26 6 1.0159 1.8487 3.0812 27 9 0.9802 2.2522 1.7924 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 2.9940 -1.2367 -1.1381 32 1 1.2674 -2.2861 -2.6716 33 1 -0.0499 -1.2572 -1.8925 34 1 1.1706 0.8479 -2.6096 35 1 2.4880 -0.1813 -3.3885 36 1 1.7104 -2.3078 2.4957 37 1 0.6540 -2.2780 1.0635 38 1 3.2518 -6.0955 0.1745 39 1 2.6120 -0.3436 5.0907 40 1 1.1193 0.6948 6.7497 41 1 -0.5150 3.2057 3.7091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069601980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:13 Heat of formation + Delta-G solvation = -94.013011 kcal Electronic energy + Delta-G solvation = -29804.866326 eV Core-core repulsion = 25449.651810 eV Total energy + Delta-G solvation = -4355.214516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.48540 -49.45977 -39.00372 -38.27921 -36.78453 -35.39466 -34.81801 -32.45430 -31.45750 -30.82916 -29.78705 -27.37530 -24.29617 -23.76620 -23.43739 -21.92798 -21.77174 -19.45496 -18.89220 -18.43475 -17.69431 -17.40333 -17.12010 -16.70222 -16.35821 -16.11295 -15.87934 -15.62330 -14.89299 -14.84628 -14.61946 -14.34295 -13.92453 -13.82586 -13.68082 -13.06828 -12.91638 -12.49411 -12.46158 -12.16420 -11.96633 -11.89153 -11.73337 -11.59809 -11.52821 -11.29151 -10.98717 -10.87332 -10.78324 -10.74526 -10.41418 -10.14370 -9.80541 -9.61029 -9.36664 -9.32503 -9.25025 -8.57914 -8.21492 -6.07031 -4.04655 0.20362 0.65426 0.74862 2.79046 3.24630 3.31501 3.32160 3.37204 3.43546 3.91987 4.09457 4.14302 4.37917 4.41095 4.43772 4.66163 4.97627 5.12710 5.16584 5.23380 5.32960 5.35759 5.50152 5.54417 5.59677 5.61653 5.63877 5.65353 5.81990 5.91547 6.09471 6.20435 6.30191 6.32598 6.53042 6.54898 6.68624 6.73820 7.00931 7.07663 7.33843 7.57540 8.49304 8.97795 9.52055 11.05993 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.005185 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.845493 B = 5399.273785 C = 6473.313824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.095 0.905 4 C -0.134 4.134 5 C -0.170 4.170 6 C -0.193 4.193 7 N -0.966 5.966 8 C 0.225 3.775 9 C -0.519 4.519 10 H 0.083 0.917 11 C 0.076 3.924 12 N -0.895 5.895 13 Si 0.865 3.135 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.265 1.265 17 S 2.683 3.317 18 O -0.931 6.931 19 O -0.957 6.957 20 C -0.727 4.727 21 C 0.036 3.964 22 C -0.185 4.185 23 C 0.175 3.825 24 F -0.125 7.125 25 C -0.214 4.214 26 C 0.227 3.773 27 F -0.110 7.110 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.552 13.917 6.381 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.113 0.887 4 C -0.154 4.154 5 C -0.207 4.207 6 C -0.231 4.231 7 N -0.805 5.805 8 C 0.102 3.898 9 C -0.558 4.558 10 H 0.101 0.899 11 C -0.127 4.127 12 N -0.533 5.533 13 Si 0.693 3.307 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.190 1.190 17 S 2.769 3.231 18 O -0.921 6.921 19 O -0.947 6.947 20 C -0.809 4.809 21 C 0.017 3.983 22 C -0.205 4.205 23 C 0.156 3.844 24 F -0.104 7.104 25 C -0.234 4.234 26 C 0.206 3.794 27 F -0.088 7.088 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.183 0.817 40 H 0.170 0.830 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.681 13.840 6.396 17.071 hybrid contribution -1.673 -0.250 0.800 1.872 sum -9.354 13.590 7.196 17.999 Atomic orbital electron populations 1.22300 0.95923 1.02895 1.01184 1.20290 0.93444 0.95185 0.83682 0.88718 1.22625 1.01957 1.02100 0.88736 1.22962 0.97562 0.96328 1.03832 1.22984 1.04152 0.97092 0.98862 1.57286 1.70113 1.21463 1.31591 1.19512 0.97361 0.75956 0.96989 1.21317 1.13632 0.90345 1.30466 0.89931 1.24801 0.95764 0.96994 0.95119 1.69880 1.36572 1.04285 1.42584 0.87022 0.82989 0.79441 0.81296 1.20162 1.21013 1.19003 1.02528 0.73978 0.73341 0.73270 1.93615 1.66635 1.57626 1.74188 1.93565 1.72961 1.56644 1.71490 1.31809 1.20719 1.12919 1.15416 1.20838 0.93728 0.94467 0.89256 1.21353 0.98353 0.98601 1.02184 1.17508 0.88842 0.92217 0.85875 1.91563 1.69799 1.83280 1.65724 1.21045 1.04490 1.05824 0.92091 1.16622 0.92713 0.91246 0.78798 1.91631 1.94827 1.88809 1.33560 0.90998 0.93219 0.91791 0.85802 0.89012 0.88930 0.89578 0.89341 0.94863 0.94827 0.92627 0.81673 0.83030 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 7.53 37.16 0.28 -2.06 16 2 C 0.18 3.07 2.30 -67.93 -0.16 2.92 16 3 H 0.09 1.56 5.87 -51.93 -0.30 1.25 16 4 C -0.13 -2.42 4.77 -90.62 -0.43 -2.86 16 5 C -0.17 -2.77 9.50 -26.73 -0.25 -3.02 16 6 C -0.19 -2.85 9.95 -26.73 -0.27 -3.12 16 7 N -0.97 -18.60 2.73 -108.57 -0.30 -18.90 16 8 C 0.22 4.93 3.87 -5.20 -0.02 4.91 16 9 C -0.52 -13.65 8.75 -34.44 -0.30 -13.95 16 10 H 0.08 2.37 6.40 -52.49 -0.34 2.04 16 11 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 12 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 13 Si 0.87 20.28 27.47 -169.99 -4.67 15.61 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 17 S 2.68 50.49 5.28 -107.50 -0.57 49.92 16 18 O -0.93 -20.03 15.94 -57.17 -0.91 -20.95 16 19 O -0.96 -19.22 15.99 -57.17 -0.91 -20.13 16 20 C -0.73 -10.83 5.91 -39.51 -0.23 -11.06 16 21 C 0.04 0.46 9.54 -39.60 -0.38 0.08 16 22 C -0.19 -1.92 10.02 -39.51 -0.40 -2.32 16 23 C 0.18 1.87 7.30 -39.43 -0.29 1.58 16 24 F -0.13 -1.27 17.27 2.25 0.04 -1.23 16 25 C -0.21 -2.36 10.01 -39.45 -0.39 -2.75 16 26 C 0.23 3.06 7.21 -39.43 -0.28 2.77 16 27 F -0.11 -1.53 13.13 2.25 0.03 -1.50 16 28 H 0.07 1.08 5.78 -51.93 -0.30 0.78 16 29 H 0.05 0.65 7.01 -51.93 -0.36 0.28 16 30 H 0.06 0.78 7.18 -51.93 -0.37 0.41 16 31 H 0.12 2.64 6.20 -51.93 -0.32 2.32 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.09 1.36 5.82 -51.93 -0.30 1.06 16 34 H 0.09 1.11 7.93 -51.93 -0.41 0.69 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.03 0.73 6.67 -51.93 -0.35 0.39 16 37 H 0.03 0.70 5.88 -51.93 -0.31 0.40 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.17 1.93 7.33 -52.49 -0.38 1.55 16 40 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -31.26 347.44 -9.11 -40.37 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.61 Total: 4.04 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -3.22 Total: -26.90 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.48 Total: -44.47 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.83 Total: -41.08 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.07 Total: -2.73 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Atomic # 16 Polarization: 50.49 SS G_CDS: -0.57 Total: 49.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.26 -9.11 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069601980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.639 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds