Wall clock time and date at job start Tue Mar 31 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47005 * 2 1 4 4 S 1.65592 * 120.00147 * 165.00271 * 3 2 1 5 5 O 1.42097 * 106.40268 * 311.46132 * 4 3 2 6 6 O 1.42104 * 106.40593 * 178.53809 * 4 3 2 7 7 C 1.76201 * 107.21795 * 64.99790 * 4 3 2 8 8 C 1.38462 * 119.88834 * 90.00186 * 7 4 3 9 9 C 1.38205 * 120.33952 * 180.02562 * 8 7 4 10 10 C 1.38317 * 120.11894 * 0.02562 * 9 8 7 11 11 F 1.35102 * 120.11562 * 179.97438 * 10 9 8 12 12 C 1.39836 * 119.77723 * 359.97438 * 10 9 8 13 13 C 1.47690 * 120.16628 * 179.97438 * 12 10 9 14 14 O 1.21570 * 119.99746 * 311.76592 * 13 12 10 15 15 N 1.34769 * 119.99907 * 132.03762 * 13 12 10 16 16 C 1.46504 * 120.00191 * 4.59989 * 15 13 12 17 17 C 1.46503 * 119.99885 * 184.59506 * 15 13 12 18 18 C 1.50701 * 109.47176 * 90.00212 * 17 15 13 19 19 H 1.08000 * 119.99535 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99942 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46997 * 60.00160 * 22 20 18 24 24 H 1.48496 * 109.47129 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46988 * 300.00406 * 22 20 18 26 26 C 1.37849 * 119.89456 * 270.23257 * 7 4 3 27 27 H 1.09007 * 109.47029 * 299.99618 * 1 2 3 28 28 H 1.09000 * 109.47730 * 60.00188 * 1 2 3 29 29 H 1.09005 * 109.46749 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47029 * 240.00382 * 2 1 3 31 31 H 1.08994 * 109.47354 * 120.00042 * 2 1 3 32 32 H 0.97006 * 119.99746 * 344.99637 * 3 2 1 33 33 H 1.07999 * 119.83563 * 359.97438 * 8 7 4 34 34 H 1.08004 * 119.94044 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.46898 * 84.90345 * 16 15 13 36 36 H 1.08999 * 109.46680 * 204.90205 * 16 15 13 37 37 H 1.08995 * 109.46776 * 324.89989 * 16 15 13 38 38 H 1.08999 * 109.47327 * 210.00588 * 17 15 13 39 39 H 1.09004 * 109.47299 * 330.00140 * 17 15 13 40 40 H 0.97003 * 119.99888 * 179.97438 * 21 20 18 41 41 H 1.08006 * 120.06142 * 0.02770 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7002 0.3711 5 8 3.8848 0.9833 1.5645 6 8 3.7650 3.1065 0.2511 7 6 4.5893 0.9737 -0.8934 8 6 4.9190 1.7090 -2.0193 9 6 5.6938 1.1483 -3.0171 10 6 6.1448 -0.1537 -2.8965 11 9 6.9017 -0.7019 -3.8721 12 6 5.8148 -0.9007 -1.7615 13 6 6.2913 -2.2919 -1.6242 14 8 6.1611 -3.0728 -2.5467 15 7 6.8656 -2.6970 -0.4742 16 6 6.9266 -1.7889 0.6738 17 6 7.4289 -4.0455 -0.3722 18 6 8.8763 -4.0184 -0.7911 19 1 9.3311 -3.0895 -1.1018 20 6 9.6200 -5.1793 -0.7766 21 7 9.0661 -6.3104 -0.3978 22 14 11.4143 -5.1456 -1.2952 23 1 12.1689 -4.2251 -0.4072 24 1 11.9851 -6.5125 -1.1918 25 1 11.5149 -4.6724 -2.6992 26 6 5.0282 -0.3262 -0.7606 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.4149 2.1090 -0.2175 33 1 4.5683 2.7256 -2.1189 34 1 5.9468 1.7276 -3.8928 35 1 5.9954 -1.8521 1.2368 36 1 7.7599 -2.0718 1.3169 37 1 7.0698 -0.7674 0.3217 38 1 7.3553 -4.3931 0.6583 39 1 6.8746 -4.7211 -1.0238 40 1 9.5893 -7.1272 -0.3880 41 1 4.7661 -0.8988 0.1169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069625809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:39 Heat of formation + Delta-G solvation = -120.597965 kcal Electronic energy + Delta-G solvation = -28412.372724 eV Core-core repulsion = 24141.351270 eV Total energy + Delta-G solvation = -4271.021454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.104 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.07320 -39.96124 -38.16808 -37.54515 -36.25492 -36.11352 -35.00015 -32.80988 -31.57810 -31.15606 -30.11731 -27.84212 -26.14858 -24.33344 -23.46979 -23.29101 -22.56790 -20.23470 -19.36145 -17.95510 -17.72506 -17.40516 -17.04725 -16.58231 -16.37844 -16.27438 -15.77558 -15.26959 -15.14696 -14.93765 -14.60164 -14.33530 -14.20370 -13.75570 -13.50728 -13.47120 -13.00074 -12.88578 -12.42206 -12.40622 -12.35520 -12.28650 -12.17113 -12.07088 -11.97825 -11.83783 -11.60730 -11.25573 -11.24215 -10.95486 -10.61631 -10.21331 -9.94355 -9.73992 -9.47812 -9.39192 -9.13655 -8.46918 -7.78989 -6.08526 -4.13858 0.03100 0.37741 0.69392 2.54775 2.88632 3.27275 3.30855 3.34818 3.39354 3.46019 3.71916 3.90896 4.03819 4.34065 4.40742 4.52088 4.54779 4.72626 4.80527 4.84430 4.97893 5.15499 5.23525 5.26431 5.37802 5.51234 5.55335 5.58509 5.59688 5.66206 5.72623 5.74847 5.85427 6.17772 6.37035 6.54929 6.93581 7.33524 7.41361 7.86770 8.16238 8.20797 8.73817 8.92590 9.51273 10.99590 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.003207 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.374543 B = 8729.253346 C = 9260.025389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 N -1.117 6.117 4 S 2.702 3.298 5 O -0.949 6.949 6 O -0.958 6.958 7 C -0.702 4.702 8 C 0.020 3.980 9 C -0.181 4.181 10 C 0.203 3.797 11 F -0.110 7.110 12 C -0.168 4.168 13 C 0.546 3.454 14 O -0.523 6.523 15 N -0.589 5.589 16 C 0.073 3.927 17 C 0.244 3.756 18 C -0.532 4.532 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.276 1.276 26 C 0.032 3.968 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.418 0.582 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.048 0.952 40 H 0.265 0.735 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.744 18.266 0.575 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.020 4.020 3 N -0.878 5.878 4 S 2.790 3.210 5 O -0.939 6.939 6 O -0.948 6.948 7 C -0.789 4.789 8 C 0.000 4.000 9 C -0.200 4.200 10 C 0.182 3.818 11 F -0.087 7.087 12 C -0.173 4.173 13 C 0.331 3.669 14 O -0.400 6.400 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.126 3.874 18 C -0.571 4.571 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.201 1.201 26 C 0.013 3.987 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.253 0.747 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.290 17.857 0.869 24.187 hybrid contribution 1.199 -0.207 -1.282 1.767 sum -15.091 17.649 -0.413 23.225 Atomic orbital electron populations 1.21949 0.93838 1.03276 1.02686 1.21364 0.96743 0.81129 1.02743 1.55570 1.28568 1.15037 1.88645 1.01729 0.72301 0.73211 0.73750 1.93615 1.83719 1.74398 1.42172 1.93598 1.85290 1.28969 1.86914 1.30889 1.22724 1.06226 1.19015 1.20806 0.90998 0.98764 0.89387 1.21222 1.02629 0.93932 1.02243 1.17989 0.88237 0.91098 0.84481 1.91634 1.71885 1.85611 1.59614 1.20513 1.04003 0.97251 0.95560 1.17790 0.79618 0.85660 0.83860 1.90806 1.56291 1.53989 1.38929 1.48126 1.55713 1.17336 1.10788 1.21925 1.02283 0.93406 0.89511 1.19410 0.93640 0.76163 0.98198 1.21377 0.95318 0.94861 1.45502 0.92465 1.24921 0.98831 0.95156 0.95024 1.69917 1.36837 0.99131 1.47296 0.86537 0.84360 0.77098 0.79323 1.20170 1.21080 1.20139 1.21113 0.89632 0.91914 0.96080 0.91724 0.91925 0.90736 0.91374 0.89791 0.74701 0.83044 0.83154 0.92783 0.89881 0.92456 0.94397 0.93428 0.92551 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 10.05 37.16 0.37 -0.36 16 2 C 0.11 0.67 6.94 -4.04 -0.03 0.64 16 3 N -1.12 -7.15 6.00 -10.61 -0.06 -7.21 16 4 S 2.70 25.66 5.73 -107.50 -0.62 25.04 16 5 O -0.95 -11.71 16.74 -57.17 -0.96 -12.67 16 6 O -0.96 -10.86 17.27 -57.17 -0.99 -11.85 16 7 C -0.70 -7.42 5.94 -39.64 -0.24 -7.65 16 8 C 0.02 0.19 9.51 -39.51 -0.38 -0.19 16 9 C -0.18 -1.97 10.01 -39.56 -0.40 -2.37 16 10 C 0.20 3.10 7.26 -38.96 -0.28 2.82 16 11 F -0.11 -1.96 16.49 2.25 0.04 -1.92 16 12 C -0.17 -2.77 4.93 -104.91 -0.52 -3.29 16 13 C 0.55 11.75 7.02 -12.40 -0.09 11.67 16 14 O -0.52 -13.44 16.17 5.30 0.09 -13.36 16 15 N -0.59 -12.69 2.86 -184.14 -0.53 -13.21 16 16 C 0.07 1.20 9.05 59.85 0.54 1.74 16 17 C 0.24 6.38 5.17 -5.19 -0.03 6.36 16 18 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 22 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 C 0.03 0.42 7.23 -39.19 -0.28 0.14 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.56 7.75 -51.93 -0.40 0.16 16 32 H 0.42 1.74 8.65 -34.47 -0.30 1.44 16 33 H 0.15 1.01 7.60 -52.49 -0.40 0.61 16 34 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.05 0.75 7.04 -51.93 -0.37 0.39 16 36 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 37 H 0.06 0.85 6.24 -51.93 -0.32 0.52 16 38 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 39 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 41 H 0.16 1.85 5.77 -52.48 -0.30 1.54 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -37.28 366.64 -8.49 -45.78 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.97 Total: -3.11 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.74 Total: -4.27 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.15 Total: -46.11 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.86 Total: -37.87 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 25.66 SS G_CDS: -0.62 Total: 25.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.28 -8.49 -45.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069625809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.819 kcal (2) G-P(sol) polarization free energy of solvation -37.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds