Wall clock time and date at job start Tue Mar 31 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47055 * 275.41662 * 3 2 1 5 5 H 1.48502 * 109.47032 * 35.41629 * 3 2 1 6 6 H 1.48503 * 109.47445 * 155.41440 * 3 2 1 7 7 C 1.39942 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 341.73120 * 7 2 1 9 9 C 1.41440 * 120.00096 * 161.72894 * 7 2 1 10 10 C 1.40786 * 120.17872 * 330.18176 * 9 7 2 11 11 C 1.37714 * 120.03891 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41111 * 359.69261 * 11 10 9 13 13 C 1.39881 * 120.35630 * 0.55797 * 12 11 10 14 14 C 1.47887 * 120.02228 * 179.74106 * 13 12 11 15 15 O 1.21551 * 120.00129 * 179.72499 * 14 13 12 16 16 N 1.34779 * 119.99946 * 359.72802 * 14 13 12 17 17 C 1.46506 * 119.99911 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.46921 * 179.97438 * 17 16 14 19 19 N 1.46506 * 109.46921 * 179.97438 * 18 17 16 20 20 C 1.34779 * 119.99911 * 180.02562 * 19 18 17 21 21 O 1.21279 * 120.00193 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99714 * 180.02562 * 20 19 18 23 23 C 1.53004 * 109.46861 * 180.02562 * 22 20 19 24 24 C 1.54266 * 110.02948 * 292.90945 * 23 22 20 25 25 C 1.54969 * 104.15903 * 217.13831 * 24 23 22 26 26 C 1.54894 * 102.77509 * 37.88478 * 25 24 23 27 27 C 1.53869 * 110.02974 * 175.69130 * 23 22 20 28 28 C 1.39027 * 119.95152 * 359.46962 * 13 12 11 29 29 H 0.96990 * 120.00294 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.97469 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.78757 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.81822 * 180.27970 * 12 11 10 33 33 H 0.96996 * 119.99985 * 359.97438 * 16 14 13 34 34 H 1.09007 * 109.46658 * 60.00395 * 17 16 14 35 35 H 1.08995 * 109.47498 * 300.00456 * 17 16 14 36 36 H 1.09000 * 109.47433 * 300.00202 * 18 17 16 37 37 H 1.08998 * 109.47036 * 60.00728 * 18 17 16 38 38 H 0.96999 * 120.00183 * 0.02562 * 19 18 17 39 39 H 1.09000 * 109.47056 * 299.99780 * 22 20 19 40 40 H 1.08998 * 109.47044 * 60.00080 * 22 20 19 41 41 H 1.08995 * 110.01681 * 54.29476 * 23 22 20 42 42 H 1.09001 * 110.49001 * 335.77781 * 24 23 22 43 43 H 1.08995 * 110.49327 * 98.43044 * 24 23 22 44 44 H 1.09000 * 110.71940 * 279.57900 * 25 24 23 45 45 H 1.08992 * 110.92703 * 156.29012 * 25 24 23 46 46 H 1.08999 * 110.48527 * 203.40932 * 26 25 24 47 47 H 1.08996 * 110.60154 * 80.82297 * 26 25 24 48 48 H 1.09001 * 110.03142 * 238.56630 * 27 23 22 49 49 H 1.08993 * 110.03550 * 359.94619 * 27 23 22 50 50 H 1.08006 * 120.20217 * 180.22812 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5924 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5089 -2.1238 0.2922 9 6 3.3689 -1.2425 -0.3846 10 6 3.8625 -0.3098 -1.3165 11 6 5.1880 -0.3426 -1.6888 12 6 6.0444 -1.2850 -1.1474 13 6 5.5709 -2.2230 -0.2241 14 6 6.4915 -3.2305 0.3456 15 8 6.0807 -4.0422 1.1517 16 7 7.7860 -3.2486 -0.0291 17 6 8.6981 -4.2463 0.5357 18 6 10.0968 -4.0492 -0.0522 19 7 11.0091 -5.0465 0.5130 20 6 12.3036 -5.0646 0.1384 21 8 12.7135 -4.2549 -0.6661 22 6 13.2419 -6.0909 0.7194 23 6 14.6410 -5.8929 0.1326 24 6 14.6347 -6.2285 -1.3731 25 6 16.0033 -6.9143 -1.6144 26 6 16.1955 -7.7567 -0.3289 27 6 15.6331 -6.8638 0.7963 28 6 4.2354 -2.2038 0.1620 29 1 -0.4850 0.8399 0.0004 30 1 3.2012 0.4318 -1.7396 31 1 5.5622 0.3745 -2.4043 32 1 7.0831 -1.2991 -1.4428 33 1 8.1138 -2.6010 -0.6726 34 1 8.3392 -5.2462 0.2913 35 1 8.7390 -4.1296 1.6186 36 1 10.0556 -4.1663 -1.1351 37 1 10.4559 -3.0494 0.1918 38 1 10.6814 -5.6939 1.1568 39 1 13.2827 -5.9740 1.8024 40 1 12.8831 -7.0907 0.4751 41 1 14.9670 -4.8640 0.2844 42 1 13.8190 -6.9122 -1.6083 43 1 14.5536 -5.3179 -1.9667 44 1 16.7951 -6.1715 -1.7113 45 1 15.9674 -7.5558 -2.4948 46 1 17.2530 -7.9609 -0.1612 47 1 15.6336 -8.6885 -0.3933 48 1 16.4413 -6.3061 1.2696 49 1 15.1182 -7.4753 1.5372 50 1 3.8663 -2.9238 0.8774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069656439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:45 Heat of formation + Delta-G solvation = -82.244787 kcal Electronic energy + Delta-G solvation = -28093.692103 eV Core-core repulsion = 24084.016311 eV Total energy + Delta-G solvation = -4009.675792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.34216 -39.51750 -38.23423 -37.40524 -35.90043 -34.04923 -33.65935 -32.05779 -30.88771 -30.11853 -29.03883 -28.92525 -26.17985 -25.21890 -23.58107 -22.32917 -21.19741 -20.93394 -20.71031 -20.02912 -19.87803 -18.13456 -17.46043 -16.51967 -16.39435 -16.22717 -15.83605 -15.61242 -15.38223 -15.24353 -14.97717 -14.70795 -14.07946 -13.84317 -13.71483 -13.69270 -13.58939 -13.40565 -12.80257 -12.76980 -12.53938 -12.13240 -12.05307 -11.91740 -11.63214 -11.60208 -11.46735 -11.32797 -11.15477 -11.08186 -10.97898 -10.82126 -10.80526 -10.58226 -10.13676 -10.04425 -9.76307 -9.50734 -9.44078 -9.20353 -8.99669 -7.91305 -7.79904 -7.03461 -4.58561 1.85324 2.34325 2.48249 2.63299 3.03459 3.15477 3.23513 3.54878 3.59097 3.90625 4.14388 4.20932 4.31390 4.41121 4.44535 4.63277 4.77577 4.82064 4.88074 5.07911 5.11984 5.17449 5.25182 5.27973 5.29628 5.35689 5.38907 5.44800 5.54097 5.62814 5.64620 5.70447 5.74364 5.83908 5.92655 5.95153 5.98517 6.04600 6.10906 6.34948 6.50977 6.62500 6.65190 6.93721 7.11729 7.16870 7.35855 7.45786 7.67978 7.72911 7.89862 7.94701 8.24877 8.49317 8.58718 8.68309 9.98619 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.034593 B = 0.001473 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.221064 B =18998.591791 C =19399.824280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.084 3.916 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.442 4.442 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.221 4.221 11 C -0.083 4.083 12 C -0.217 4.217 13 C -0.109 4.109 14 C 0.567 3.433 15 O -0.546 6.546 16 N -0.732 5.732 17 C 0.111 3.889 18 C 0.108 3.892 19 N -0.730 5.730 20 C 0.512 3.488 21 O -0.534 6.534 22 C -0.135 4.135 23 C -0.077 4.077 24 C -0.114 4.114 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.135 4.135 29 H 0.287 0.713 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.403 0.597 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.346 -10.808 0.399 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.079 3.921 10 C -0.240 4.240 11 C -0.101 4.101 12 C -0.237 4.237 13 C -0.112 4.112 14 C 0.357 3.643 15 O -0.424 6.424 16 N -0.387 5.387 17 C -0.014 4.014 18 C -0.016 4.016 19 N -0.383 5.383 20 C 0.299 3.701 21 O -0.411 6.411 22 C -0.174 4.174 23 C -0.096 4.096 24 C -0.152 4.152 25 C -0.166 4.166 26 C -0.163 4.163 27 C -0.160 4.160 28 C -0.155 4.155 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.239 0.761 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.237 0.763 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 27.055 -10.719 0.426 29.104 hybrid contribution 0.089 0.792 -0.008 0.797 sum 27.144 -9.926 0.418 28.905 Atomic orbital electron populations 1.69684 1.08104 1.30438 1.34373 1.26169 0.94754 1.01760 0.90913 0.86310 0.81373 0.79719 0.78890 1.19532 1.21610 1.16701 1.19526 0.92922 0.96337 1.38242 0.88821 1.17699 0.93158 0.91074 0.90216 1.21194 0.95717 1.04248 1.02877 1.20519 0.93722 0.97350 0.98496 1.20390 0.98005 1.00694 1.04574 1.19381 0.94213 0.97009 1.00645 1.18783 0.81137 0.83942 0.80420 1.90704 1.76681 1.40688 1.34364 1.45741 1.09524 1.35687 1.47772 1.21308 0.87747 0.93535 0.98769 1.21445 0.88254 0.92958 0.98959 1.45869 1.09566 1.35774 1.47106 1.20764 0.82167 0.85494 0.81687 1.90714 1.76365 1.40292 1.33682 1.21872 0.94992 0.98785 1.01799 1.21547 0.92400 1.00291 0.95392 1.22410 0.96691 1.00658 0.95405 1.22542 0.97735 0.98828 0.97450 1.22357 1.00622 0.98324 0.94975 1.22236 0.98417 0.97431 0.97907 1.21266 0.91026 1.01943 1.01312 0.90275 0.87846 0.88212 0.88547 0.76076 0.91054 0.91051 0.90682 0.90701 0.76264 0.88806 0.88720 0.90189 0.92091 0.90745 0.91596 0.91744 0.91871 0.91719 0.91671 0.91624 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.93 13.93 55.55 0.77 -20.16 16 2 C 0.08 2.14 5.40 -17.34 -0.09 2.05 16 3 Si 0.91 20.15 24.52 -169.99 -4.17 15.98 16 4 H -0.27 -5.72 6.71 56.52 0.38 -5.34 16 5 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.24 -5.53 6.86 56.52 0.39 -5.14 16 7 C -0.44 -11.76 9.57 -37.73 -0.36 -12.12 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.08 2.03 5.10 -106.87 -0.55 1.48 16 10 C -0.22 -5.08 7.17 -38.81 -0.28 -5.36 16 11 C -0.08 -1.66 10.01 -39.72 -0.40 -2.06 16 12 C -0.22 -4.09 9.55 -38.92 -0.37 -4.47 16 13 C -0.11 -2.28 5.87 -105.04 -0.62 -2.90 16 14 C 0.57 10.68 7.77 -12.31 -0.10 10.58 16 15 O -0.55 -11.84 16.33 5.32 0.09 -11.75 16 16 N -0.73 -10.10 5.51 -61.23 -0.34 -10.43 16 17 C 0.11 1.20 5.79 -4.04 -0.02 1.17 16 18 C 0.11 0.98 5.79 -4.04 -0.02 0.96 16 19 N -0.73 -5.50 5.56 -60.29 -0.33 -5.84 16 20 C 0.51 4.56 7.61 -10.98 -0.08 4.48 16 21 O -0.53 -6.80 14.78 5.56 0.08 -6.72 16 22 C -0.13 -0.77 4.83 -27.88 -0.13 -0.91 16 23 C -0.08 -0.53 2.55 -89.50 -0.23 -0.75 16 24 C -0.11 -0.87 5.40 -25.03 -0.14 -1.01 16 25 C -0.13 -0.80 6.91 -24.69 -0.17 -0.97 16 26 C -0.13 -0.66 6.83 -25.07 -0.17 -0.83 16 27 C -0.12 -0.64 6.46 -25.62 -0.17 -0.81 16 28 C -0.14 -3.20 9.34 -38.44 -0.36 -3.56 16 29 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 30 H 0.10 2.36 4.72 -52.49 -0.25 2.11 16 31 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.10 1.45 6.38 -52.49 -0.33 1.12 16 33 H 0.40 4.78 6.49 -40.82 -0.26 4.52 16 34 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.40 2.02 8.47 -40.82 -0.35 1.67 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.41 8.02 -51.93 -0.42 -0.01 16 41 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 42 H 0.06 0.46 7.77 -51.93 -0.40 0.06 16 43 H 0.07 0.71 7.63 -51.93 -0.40 0.32 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.28 7.67 -51.93 -0.40 -0.12 16 50 H 0.12 2.78 7.64 -52.48 -0.40 2.38 16 LS Contribution 401.80 15.07 6.05 6.05 Total: -1.00 -31.10 401.80 -9.96 -41.06 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.87 Total: 6.83 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -4.25 Total: -15.02 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.10 Total: -36.43 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.17 Total: 15.98 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.10 -9.96 -41.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.188 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds