Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.50706 * 109.47133 * 180.02562 * 21 19 18 23 23 C 1.38269 * 119.98617 * 269.73168 * 22 21 19 24 24 C 1.38219 * 120.04956 * 179.72542 * 23 22 21 25 25 C 1.38214 * 120.02624 * 0.54520 * 24 23 22 26 26 C 1.38440 * 119.97468 * 359.72348 * 25 24 23 27 27 F 1.35095 * 120.02804 * 180.02562 * 26 25 24 28 28 C 1.38175 * 119.98689 * 90.00082 * 22 21 19 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 35 35 H 1.07997 * 120.32294 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 38 38 H 1.08995 * 109.47400 * 300.00387 * 21 19 18 39 39 H 1.09002 * 109.46923 * 60.00258 * 21 19 18 40 40 H 1.08007 * 119.97551 * 359.97251 * 23 22 21 41 41 H 1.08007 * 119.98750 * 180.27231 * 24 23 22 42 42 H 1.08001 * 120.01293 * 179.70570 * 25 24 23 43 43 H 1.08000 * 120.01301 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 6 -2.2777 -10.1015 0.0384 23 6 -2.4834 -10.7669 -1.1560 24 6 -2.8646 -12.0955 -1.1514 25 6 -3.0515 -12.7572 0.0476 26 6 -2.8512 -12.0904 1.2441 27 9 -3.0331 -12.7363 2.4167 28 6 -2.4639 -10.7609 1.2383 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 4.1698 -5.0282 -0.0013 35 1 5.4519 -7.1576 -0.0007 36 1 4.2407 -9.2968 0.0000 37 1 -0.2758 -6.5552 0.0166 38 1 -2.2425 -8.1597 0.9225 39 1 -2.2529 -8.1643 -0.8574 40 1 -2.3423 -10.2493 -2.0934 41 1 -3.0208 -12.6156 -2.0850 42 1 -3.3540 -13.7940 0.0510 43 1 -2.3069 -10.2398 2.1711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069657597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = -54.146171 kcal Electronic energy + Delta-G solvation = -28051.945045 eV Core-core repulsion = 23784.194300 eV Total energy + Delta-G solvation = -4267.750744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.08018 -40.95628 -39.83428 -38.68528 -37.77056 -34.84683 -33.50294 -33.16471 -31.65463 -30.82041 -30.63049 -29.34025 -27.82384 -25.45298 -23.86682 -23.01514 -22.88144 -22.11256 -21.01516 -20.24024 -18.47049 -17.68749 -17.31113 -17.22754 -16.68393 -16.40245 -16.19350 -15.86316 -15.82953 -15.67508 -15.14722 -14.94929 -14.60479 -14.30847 -14.09193 -13.88892 -13.80445 -13.47816 -13.33186 -12.87526 -12.43726 -12.35749 -12.28853 -12.05695 -11.96877 -11.88101 -11.32955 -11.07792 -11.03608 -10.73657 -10.70117 -10.31435 -10.08409 -9.80642 -9.43023 -9.27214 -9.24714 -9.05100 -8.87785 -8.55217 -7.69833 -6.20793 -4.25651 0.88700 0.97395 1.17390 1.41974 2.65507 2.81419 3.19828 3.27097 3.30000 3.39357 3.49734 3.96089 3.98603 4.30069 4.31527 4.41746 4.48132 4.74222 4.80310 4.91475 4.92547 4.98691 5.08813 5.13751 5.16298 5.22819 5.26315 5.43749 5.57795 5.79674 5.83076 5.85545 5.86848 6.02889 6.03513 6.15727 6.19968 6.31704 6.50827 6.59246 6.64353 7.21751 7.31381 7.49379 7.60902 7.82039 8.02187 8.11534 8.31550 8.79782 9.39528 10.90663 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.002084 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.629391 B =13434.906517 C =14830.531729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.068 3.932 13 C -0.148 4.148 14 C -0.159 4.159 15 C 0.075 3.925 16 N -0.444 5.444 17 C 0.328 3.672 18 N -0.652 5.652 19 C 0.505 3.495 20 O -0.471 6.471 21 C -0.105 4.105 22 C -0.035 4.035 23 C -0.114 4.114 24 C -0.090 4.090 25 C -0.155 4.155 26 C 0.098 3.902 27 F -0.141 7.141 28 C -0.138 4.138 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.425 0.575 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -20.987 -1.304 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.016 3.984 13 C -0.175 4.175 14 C -0.181 4.181 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.095 3.905 18 N -0.301 5.301 19 C 0.290 3.710 20 O -0.340 6.340 21 C -0.145 4.145 22 C -0.035 4.035 23 C -0.132 4.132 24 C -0.108 4.108 25 C -0.174 4.174 26 C 0.079 3.921 27 F -0.120 7.120 28 C -0.157 4.157 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.263 0.737 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.553 -22.427 -1.256 22.741 hybrid contribution 0.925 2.240 0.248 2.436 sum -2.628 -20.186 -1.008 20.382 Atomic orbital electron populations 1.69970 1.06093 1.26997 1.49598 1.24984 0.94926 0.99441 0.94794 0.86429 0.79985 0.83179 0.77788 1.19626 1.20791 1.20796 1.20982 0.93106 0.90113 1.52398 0.92285 1.19131 0.94129 0.88921 0.98887 1.23402 0.97260 0.80279 0.99852 1.86096 1.36252 1.12911 1.87578 1.19600 0.91143 0.87124 1.00522 1.21617 0.92270 1.00362 1.03244 1.21899 1.01215 0.92532 1.02412 1.22409 0.88814 0.97889 0.99084 1.67617 1.07882 1.26918 1.13453 1.17806 0.84865 0.86924 1.00919 1.43480 1.03795 1.10420 1.72395 1.20614 0.89932 0.83222 0.77240 1.90824 1.65758 1.33834 1.43605 1.20725 0.92579 0.94776 1.06388 1.19074 0.97297 0.94485 0.92670 1.21086 0.99528 0.94825 0.97752 1.20957 0.97996 0.94324 0.97495 1.21136 1.03880 1.00989 0.91408 1.17628 1.02144 0.91081 0.81269 1.91497 1.92998 1.81474 1.46043 1.20978 1.02105 0.93324 0.99262 0.92680 0.95332 0.95346 0.92930 0.92942 0.83733 0.84784 0.82652 0.73741 0.87148 0.86977 0.85307 0.84943 0.84887 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -13.89 9.11 -34.44 -0.31 -14.21 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.27 4.70 37.16 0.17 1.44 16 11 O -0.32 -5.61 9.39 -19.66 -0.18 -5.80 16 12 C 0.07 1.09 6.72 -38.91 -0.26 0.83 16 13 C -0.15 -2.11 9.14 -39.17 -0.36 -2.47 16 14 C -0.16 -1.95 10.10 -39.44 -0.40 -2.35 16 15 C 0.07 1.00 11.17 -17.55 -0.20 0.81 16 16 N -0.44 -7.27 7.88 -12.22 -0.10 -7.37 16 17 C 0.33 5.25 7.45 -154.43 -1.15 4.10 16 18 N -0.65 -8.88 5.39 -11.29 -0.06 -8.94 16 19 C 0.50 6.62 7.79 -10.99 -0.09 6.53 16 20 O -0.47 -7.93 14.29 5.56 0.08 -7.85 16 21 C -0.10 -0.92 5.83 -29.03 -0.17 -1.09 16 22 C -0.03 -0.35 4.37 -104.63 -0.46 -0.80 16 23 C -0.11 -1.04 9.70 -39.58 -0.38 -1.42 16 24 C -0.09 -0.75 10.04 -39.60 -0.40 -1.14 16 25 C -0.16 -1.42 10.03 -39.52 -0.40 -1.81 16 26 C 0.10 1.06 7.30 -39.42 -0.29 0.77 16 27 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 28 C -0.14 -1.46 9.68 -39.52 -0.38 -1.84 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 33 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 34 H 0.14 1.91 6.44 -52.49 -0.34 1.57 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.42 4.98 8.04 -40.82 -0.33 4.66 16 38 H 0.11 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -33.12 379.02 -9.34 -42.45 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.23 Total: 3.06 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -5.31 Total: -10.63 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.58 Total: -40.77 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.11 Total: -13.65 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.12 -9.34 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069657597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.695 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds