Wall clock time and date at job start Tue Mar 31 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36697 * 126.60395 * 2 1 4 4 C 1.47421 * 125.77717 * 0.02562 * 3 2 1 5 5 O 1.21627 * 120.00016 * 355.01475 * 4 3 2 6 6 N 1.34783 * 120.00108 * 175.01640 * 4 3 2 7 7 C 1.36953 * 119.99755 * 5.32963 * 6 4 3 8 8 H 1.07995 * 119.99834 * 34.66266 * 7 6 4 9 9 C 1.38991 * 119.99479 * 214.66011 * 7 6 4 10 10 N 1.31396 * 120.00552 * 5.57881 * 9 7 6 11 11 Si 1.86806 * 119.99518 * 185.57845 * 9 7 6 12 12 H 1.48498 * 109.47198 * 89.99983 * 11 9 7 13 13 H 1.48499 * 109.46788 * 210.00275 * 11 9 7 14 14 H 1.48498 * 109.47318 * 329.99819 * 11 9 7 15 15 C 1.46501 * 119.99800 * 185.33211 * 6 4 3 16 16 C 1.47200 * 109.47308 * 83.24165 * 15 6 4 17 17 N 6.05158 * 92.34838 * 26.61867 * 2 1 3 18 18 N 1.34439 * 108.44760 * 179.73694 * 3 2 1 19 19 N 1.28746 * 109.58567 * 0.26500 * 18 3 2 20 20 N 1.35088 * 126.61388 * 180.19051 * 2 1 3 21 21 C 1.40242 * 126.61094 * 359.97438 * 20 2 1 22 22 C 1.38824 * 120.06998 * 49.47820 * 21 20 2 23 23 C 1.38119 * 119.94229 * 179.74866 * 22 21 20 24 24 C 1.38298 * 120.09218 * 0.55467 * 23 22 21 25 25 C 1.38250 * 120.14243 * 359.70034 * 24 23 22 26 26 C 1.38250 * 120.04994 * 0.02562 * 25 24 23 27 27 Cl 1.73603 * 120.04348 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.47532 * 94.75379 * 1 2 3 29 29 H 1.09003 * 109.46840 * 214.74708 * 1 2 3 30 30 H 1.08997 * 109.47789 * 334.74681 * 1 2 3 31 31 H 0.97000 * 120.00058 * 180.02562 * 10 9 7 32 32 H 1.09005 * 109.46856 * 203.24251 * 15 6 4 33 33 H 1.09000 * 109.47372 * 323.23892 * 15 6 4 34 34 H 1.07993 * 120.03086 * 0.02740 * 22 21 20 35 35 H 1.07998 * 119.95462 * 180.25703 * 23 22 21 36 36 H 1.08005 * 119.93148 * 179.72134 * 24 23 22 37 37 H 1.08003 * 119.97494 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0974 0.0000 4 6 1.8758 2.5024 0.0005 5 8 0.6916 2.7644 -0.0905 6 7 2.7802 3.4967 0.1019 7 6 4.1189 3.2080 0.0944 8 1 4.4921 2.3927 -0.5076 9 6 4.9971 3.9644 0.8615 10 7 4.5327 4.8840 1.6770 11 14 6.8379 3.6735 0.7329 12 1 7.4041 4.5459 -0.3271 13 1 7.4813 3.9926 2.0327 14 1 7.0916 2.2509 0.3911 15 6 2.3310 4.8861 0.2201 16 6 2.0063 5.1790 1.6257 17 7 1.7549 5.4056 2.7091 18 7 3.5995 0.6784 0.0059 19 7 3.6316 -0.6086 0.0039 20 7 2.3127 -1.0843 -0.0036 21 6 1.9079 -2.4270 -0.0076 22 6 0.9594 -2.8649 -0.9218 23 6 0.5665 -4.1891 -0.9268 24 6 1.1082 -5.0765 -0.0149 25 6 2.0491 -4.6432 0.9007 26 6 2.4508 -3.3204 0.9072 27 17 3.6318 -2.7764 2.0574 28 1 -0.3634 -0.0852 -1.0241 29 1 -0.3633 -0.8444 0.5857 30 1 -0.3634 0.9294 0.4384 31 1 5.1457 5.4121 2.2120 32 1 3.1239 5.5541 -0.1165 33 1 1.4444 5.0351 -0.3962 34 1 0.5325 -2.1719 -1.6315 35 1 -0.1683 -4.5308 -1.6407 36 1 0.7958 -6.1104 -0.0181 37 1 2.4707 -5.3387 1.6114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069662055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:36 Heat of formation + Delta-G solvation = 135.433006 kcal Electronic energy + Delta-G solvation = -27226.724278 eV Core-core repulsion = 23226.564425 eV Total energy + Delta-G solvation = -4000.159853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93413 -39.61031 -38.50266 -36.60710 -35.56408 -34.70674 -34.21183 -32.09312 -31.58800 -31.19414 -29.81311 -28.14762 -26.83440 -24.82646 -23.93121 -23.39910 -22.09055 -20.81386 -19.51300 -18.31787 -17.72291 -16.90917 -16.44839 -16.17593 -15.73601 -15.04903 -14.89148 -14.57027 -14.31136 -14.24189 -13.89109 -13.72735 -13.37537 -13.06236 -12.85499 -12.79785 -12.57714 -12.23854 -11.93533 -11.84814 -11.75019 -11.59045 -11.38787 -11.17287 -11.09711 -11.03113 -10.94181 -10.44136 -10.38065 -10.19063 -9.99456 -9.30712 -9.20294 -8.94467 -8.82441 -8.49610 -7.88170 -6.43679 -4.09172 0.45641 0.72937 1.66896 1.86839 2.30390 2.49505 3.11719 3.20587 3.28094 3.34932 3.76086 4.15141 4.24715 4.26421 4.34159 4.46379 4.53613 4.72419 4.78592 4.84655 4.97467 5.01082 5.11360 5.31773 5.41962 5.52087 5.59988 5.64046 5.68369 5.89688 5.89913 6.00457 6.14726 6.23558 6.36487 6.55717 6.64938 6.93371 7.54275 7.59997 8.38191 8.54892 9.01323 9.03830 9.25582 9.64535 10.61138 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003857 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.056132 B = 7257.471573 C = 8405.168203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.101 3.899 3 C -0.048 4.048 4 C 0.541 3.459 5 O -0.595 6.595 6 N -0.419 5.419 7 C -0.323 4.323 8 H 0.125 0.875 9 C 0.043 3.957 10 N -0.873 5.873 11 Si 0.926 3.074 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.233 3.767 16 C 0.259 3.741 17 N -0.482 5.482 18 N -0.160 5.160 19 N -0.073 5.073 20 N -0.337 5.337 21 C 0.153 3.847 22 C -0.103 4.103 23 C -0.101 4.101 24 C -0.103 4.103 25 C -0.100 4.100 26 C -0.027 4.027 27 Cl -0.035 7.035 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.274 0.726 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -18.296 -6.642 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.033 4.033 3 C -0.185 4.185 4 C 0.330 3.670 5 O -0.480 6.480 6 N -0.136 5.136 7 C -0.451 4.451 8 H 0.142 0.858 9 C -0.163 4.163 10 N -0.510 5.510 11 Si 0.752 3.248 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.106 3.894 16 C -0.058 4.058 17 N -0.163 5.163 18 N -0.032 5.032 19 N -0.050 5.050 20 N -0.119 5.119 21 C 0.060 3.940 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.056 4.056 27 Cl -0.006 7.006 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.885 -17.926 -4.839 19.478 hybrid contribution 0.584 -0.041 -0.056 0.588 sum -5.300 -17.968 -4.896 19.362 Atomic orbital electron populations 1.20657 0.85213 1.05497 1.03411 1.21854 0.95784 0.85713 0.99908 1.21214 0.87997 0.95483 1.13842 1.16828 0.84972 0.82556 0.82678 1.90620 1.16176 1.83214 1.58007 1.43350 1.06513 1.02708 1.61029 1.20248 0.80014 1.18299 1.26578 0.85825 1.25500 1.01103 0.95868 0.93836 1.69631 1.35929 1.21905 1.23578 0.85905 0.81774 0.79599 0.77535 1.20196 1.21122 1.18584 1.18512 1.00398 0.85638 0.84817 1.28928 0.89119 0.92557 0.95243 1.80783 1.14431 1.08974 1.12109 1.75104 1.18835 1.01529 1.07778 1.82261 0.94432 1.05018 1.23261 1.47450 1.07730 1.03582 1.53131 1.17244 0.98607 0.81091 0.97039 1.21185 0.96898 0.97095 0.97164 1.21136 0.99809 0.92025 0.98971 1.21261 0.95890 1.00476 0.94557 1.21055 0.97853 0.92990 0.99993 1.21022 0.96280 0.94347 0.93931 1.98444 1.55153 1.89897 1.57088 0.89812 0.91530 0.86684 0.91477 0.86475 0.89139 0.84028 0.84201 0.84333 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 8.64 36.00 0.31 -0.93 16 2 C 0.10 1.80 6.87 -81.72 -0.56 1.24 16 3 C -0.05 -1.05 6.74 -83.54 -0.56 -1.61 16 4 C 0.54 12.65 7.54 -12.52 -0.09 12.56 16 5 O -0.59 -13.86 14.34 5.25 0.08 -13.78 16 6 N -0.42 -10.03 2.56 -119.15 -0.31 -10.33 16 7 C -0.32 -7.98 8.10 -14.99 -0.12 -8.11 16 8 H 0.12 3.08 5.65 -52.49 -0.30 2.79 16 9 C 0.04 1.06 5.16 -17.46 -0.09 0.97 16 10 N -0.87 -22.64 9.40 55.50 0.52 -22.12 16 11 Si 0.93 20.17 29.56 -169.99 -5.02 15.15 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.26 -5.80 7.11 56.52 0.40 -5.39 16 15 C 0.23 5.08 5.10 -6.83 -0.03 5.05 16 16 C 0.26 6.35 13.08 -20.79 -0.27 6.08 16 17 N -0.48 -12.60 18.53 42.12 0.78 -11.82 16 18 N -0.16 -3.60 9.00 32.85 0.30 -3.31 16 19 N -0.07 -1.48 12.44 60.35 0.75 -0.73 16 20 N -0.34 -5.76 3.36 -6.68 -0.02 -5.78 16 21 C 0.15 2.04 6.01 -83.54 -0.50 1.54 16 22 C -0.10 -1.00 8.94 -39.41 -0.35 -1.36 16 23 C -0.10 -0.69 10.04 -39.60 -0.40 -1.09 16 24 C -0.10 -0.67 10.04 -39.55 -0.40 -1.07 16 25 C -0.10 -0.87 9.83 -39.57 -0.39 -1.26 16 26 C -0.03 -0.33 6.33 -39.33 -0.25 -0.58 16 27 Cl -0.04 -0.52 27.36 -51.86 -1.42 -1.94 16 28 H 0.08 0.96 8.00 -51.93 -0.42 0.54 16 29 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16 30 H 0.11 1.86 6.29 -51.93 -0.33 1.53 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.12 2.47 7.17 -51.93 -0.37 2.09 16 33 H 0.09 1.74 7.56 -51.93 -0.39 1.34 16 34 H 0.14 1.23 7.56 -52.49 -0.40 0.83 16 35 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -32.06 342.92 -5.91 -37.97 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.01 Total: 0.09 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -3.71 Total: 11.43 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 2.02 Total: -54.09 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.08 Total: -13.78 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.42 Total: -1.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.06 -5.91 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069662055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.401 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds