Wall clock time and date at job start Tue Mar 31 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76210 * 100.00036 * 2 1 4 4 N 1.28526 * 125.03179 * 180.02562 * 3 2 1 5 5 N 1.37792 * 116.17225 * 179.75094 * 4 3 2 6 6 C 1.46494 * 122.69792 * 180.27766 * 5 4 3 7 7 N 1.46894 * 109.47174 * 270.20392 * 6 5 4 8 8 C 1.46907 * 111.00250 * 189.99841 * 7 6 5 9 9 C 1.50705 * 109.46754 * 75.54607 * 8 7 6 10 10 H 1.07997 * 119.99767 * 355.21821 * 9 8 7 11 11 C 1.37878 * 119.99712 * 175.22082 * 9 8 7 12 12 N 1.31507 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99721 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47262 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47104 * 120.00125 * 13 11 9 16 16 H 1.48500 * 109.46957 * 239.99778 * 13 11 9 17 17 C 1.46901 * 111.00177 * 66.04664 * 7 6 5 18 18 H 1.08995 * 109.47186 * 309.22903 * 17 7 6 19 19 C 1.52998 * 109.47255 * 69.22650 * 17 7 6 20 20 C 1.53002 * 109.47345 * 189.22767 * 17 7 6 21 21 C 1.53002 * 117.49762 * 243.33773 * 20 17 7 22 22 C 1.52999 * 60.00025 * 252.50911 * 21 20 17 23 23 C 1.33512 * 114.60461 * 0.46869 * 5 4 3 24 24 S 1.71200 * 125.64677 * 179.83530 * 23 5 4 25 25 S 1.75932 * 125.02630 * 0.02621 * 3 2 1 26 26 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47344 * 300.00098 * 1 2 3 28 28 H 1.08998 * 109.47374 * 59.99856 * 1 2 3 29 29 H 1.08997 * 109.47294 * 30.20438 * 6 5 4 30 30 H 1.09003 * 109.47080 * 150.20314 * 6 5 4 31 31 H 1.09001 * 109.47378 * 195.54542 * 8 7 6 32 32 H 1.09000 * 109.46711 * 315.55039 * 8 7 6 33 33 H 0.97001 * 119.99841 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.47117 * 60.00184 * 19 17 7 35 35 H 1.08995 * 109.47403 * 180.02562 * 19 17 7 36 36 H 1.09002 * 109.47169 * 300.00797 * 19 17 7 37 37 H 1.08999 * 115.54919 * 29.04125 * 20 17 7 38 38 H 1.08996 * 117.49839 * 0.02562 * 21 20 17 39 39 H 1.09004 * 117.49751 * 145.01953 * 21 20 17 40 40 H 1.08995 * 117.50411 * 252.51081 * 22 21 20 41 41 H 1.09006 * 117.51619 * 107.47922 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 3.2805 2.2791 -0.0005 5 7 3.3079 3.6568 -0.0058 6 6 4.5562 4.4234 -0.0129 7 7 4.9808 4.6807 1.3696 8 6 6.0911 5.6419 1.4092 9 6 5.5632 7.0299 1.1525 10 1 4.5227 7.1740 0.9012 11 6 6.4085 8.1158 1.2384 12 7 7.6755 7.9401 1.5437 13 14 5.7543 9.8361 0.9195 14 1 4.3068 9.7632 0.5957 15 1 5.9496 10.6724 2.1311 16 1 6.4866 10.4404 -0.2223 17 6 5.3426 3.4303 2.0505 18 1 4.5400 2.7034 1.9260 19 6 6.6327 2.8743 1.4445 20 6 5.5558 3.7043 3.5407 21 6 6.9565 3.4679 4.1090 22 6 5.8198 2.5020 4.4493 23 6 2.1054 4.2367 0.0003 24 16 1.8110 5.9232 0.0000 25 16 0.8725 2.9799 0.0007 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 5.3288 3.8549 -0.5304 30 1 4.3973 5.3716 -0.5267 31 1 6.5653 5.6091 2.3901 32 1 6.8224 5.3839 0.6432 33 1 8.2701 8.7041 1.6045 34 1 7.4354 3.6012 1.5691 35 1 6.9009 1.9464 1.9495 36 1 6.4808 2.6792 0.3829 37 1 4.9774 4.5304 3.9542 38 1 7.7262 3.1175 3.4213 39 1 7.2999 4.1386 4.8967 40 1 5.4152 2.5372 5.4608 41 1 5.8411 1.5158 3.9856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069737765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:16 Heat of formation + Delta-G solvation = 124.753190 kcal Electronic energy + Delta-G solvation = -24148.030758 eV Core-core repulsion = 20831.188665 eV Total energy + Delta-G solvation = -3316.842093 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59689 -38.55822 -35.68763 -33.31342 -32.43501 -29.81524 -29.39943 -28.12446 -26.40542 -25.57874 -23.77700 -22.38035 -21.87464 -21.28611 -19.80812 -18.65950 -17.99550 -16.77002 -16.49595 -16.09141 -15.74569 -15.37585 -14.85955 -14.68230 -14.29655 -14.19139 -14.06161 -13.58382 -13.38677 -13.01751 -12.80959 -12.26315 -12.00770 -11.91421 -11.76621 -11.72001 -11.43192 -11.16249 -11.10945 -10.94069 -10.68942 -10.61991 -10.59202 -10.46255 -10.13078 -9.89059 -9.88416 -9.39599 -9.18196 -8.49474 -8.38917 -7.66336 -7.47925 -7.29318 -5.98578 -3.98596 0.19719 0.27223 0.33322 0.81708 1.15530 1.64186 2.18136 2.42262 3.38323 3.46308 3.57475 4.13820 4.34456 4.45840 4.49275 4.49766 4.64389 5.12122 5.12423 5.24964 5.35911 5.37259 5.44508 5.62065 5.67690 5.74145 5.84866 5.89054 5.96647 6.13545 6.17631 6.32554 6.43730 6.57586 6.68220 6.95629 7.10185 7.20326 7.81741 7.89306 8.09857 8.45811 9.15078 9.66921 11.11780 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.011421 B = 0.004380 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.993047 B = 6391.766199 C = 8215.833565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 S 0.052 5.948 3 C 0.014 3.986 4 N -0.215 5.215 5 N -0.325 5.325 6 C 0.292 3.708 7 N -0.529 5.529 8 C 0.201 3.799 9 C -0.509 4.509 10 H 0.079 0.921 11 C 0.059 3.941 12 N -0.901 5.901 13 Si 0.892 3.108 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.287 1.287 17 C 0.107 3.893 18 H 0.070 0.930 19 C -0.183 4.183 20 C -0.127 4.127 21 C -0.178 4.178 22 C -0.187 4.187 23 C 0.227 3.773 24 S -0.408 6.408 25 S 0.105 5.895 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.052 0.948 32 H -0.006 1.006 33 H 0.259 0.741 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 -19.739 -2.022 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 S 0.277 5.723 3 C -0.394 4.394 4 N -0.035 5.035 5 N -0.121 5.121 6 C 0.081 3.919 7 N -0.254 5.254 8 C 0.078 3.922 9 C -0.548 4.548 10 H 0.097 0.903 11 C -0.142 4.142 12 N -0.540 5.540 13 Si 0.720 3.280 14 H -0.191 1.191 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.001 4.001 18 H 0.088 0.912 19 C -0.242 4.242 20 C -0.145 4.145 21 C -0.215 4.215 22 C -0.225 4.225 23 C -0.138 4.138 24 S -0.278 6.278 25 S 0.337 5.663 26 H 0.144 0.856 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.069 0.931 32 H 0.012 0.988 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.336 -19.399 -1.753 22.537 hybrid contribution 0.421 1.058 -0.396 1.205 sum -10.915 -18.341 -2.149 21.451 Atomic orbital electron populations 1.24009 0.94653 1.08588 1.07324 1.85875 1.05664 0.89649 1.91135 1.29881 0.96070 1.06102 1.07350 1.74295 1.20190 0.92353 1.16667 1.49688 1.07735 0.99976 1.54659 1.22794 0.79160 0.95614 0.94379 1.62255 1.41579 1.10009 1.11581 1.19792 0.85488 0.88997 0.97964 1.21424 0.97063 0.90096 1.46213 0.90317 1.24918 0.94729 0.99207 0.95367 1.69963 1.04032 1.30705 1.49350 0.86509 0.79674 0.84257 0.77591 1.19099 1.21229 1.21290 1.21203 0.95375 0.91507 0.92065 0.91236 1.22537 1.00005 1.01290 1.00354 1.22184 0.99453 0.99404 0.93485 1.23077 0.92331 1.02521 1.03549 1.22935 1.04519 0.94817 1.00184 1.28768 0.89625 1.04652 0.90785 1.93150 1.85457 0.89149 1.60025 1.86351 1.09300 0.92906 1.77776 0.85621 0.88526 0.88579 0.91110 0.84154 0.93051 0.98822 0.93134 0.90946 0.92808 0.93204 0.87057 0.88460 0.89156 0.89367 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.75 9.46 101.05 0.96 0.20 16 2 S 0.05 0.41 22.96 -107.50 -2.47 -2.05 16 3 C 0.01 0.17 7.79 51.38 0.40 0.57 16 4 N -0.22 -3.18 10.31 30.92 0.32 -2.86 16 5 N -0.33 -5.53 3.24 -63.92 -0.21 -5.74 16 6 C 0.29 5.54 5.27 -63.33 -0.33 5.21 16 7 N -0.53 -10.88 4.52 -231.97 -1.05 -11.93 16 8 C 0.20 4.90 3.37 -4.97 -0.02 4.88 16 9 C -0.51 -13.96 8.61 -34.44 -0.30 -14.26 16 10 H 0.08 2.23 7.65 -52.49 -0.40 1.83 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 13 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 C 0.11 1.90 2.60 -67.71 -0.18 1.73 16 18 H 0.07 1.23 6.24 -51.93 -0.32 0.90 16 19 C -0.18 -3.00 7.11 37.16 0.26 -2.73 16 20 C -0.13 -2.21 4.62 -90.62 -0.42 -2.62 16 21 C -0.18 -2.81 9.26 -26.73 -0.25 -3.06 16 22 C -0.19 -2.64 9.96 -26.73 -0.27 -2.91 16 23 C 0.23 3.90 7.53 53.49 0.40 4.30 16 24 S -0.41 -8.43 29.88 -107.50 -3.21 -11.65 16 25 S 0.11 1.28 21.80 -107.50 -2.34 -1.06 16 26 H 0.13 0.24 8.14 -51.91 -0.42 -0.19 16 27 H 0.10 0.41 7.99 -51.91 -0.42 -0.01 16 28 H 0.10 0.38 8.00 -51.92 -0.42 -0.04 16 29 H 0.07 1.26 6.36 -51.93 -0.33 0.93 16 30 H 0.14 2.96 6.42 -51.93 -0.33 2.63 16 31 H 0.05 1.34 6.61 -51.93 -0.34 1.00 16 32 H -0.01 -0.15 7.31 -51.93 -0.38 -0.53 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.07 1.31 5.88 -51.93 -0.31 1.01 16 35 H 0.05 0.77 7.19 -51.93 -0.37 0.40 16 36 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 37 H 0.11 2.19 8.14 -51.93 -0.42 1.77 16 38 H 0.10 1.51 5.82 -51.93 -0.30 1.21 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.13 7.95 -51.93 -0.41 0.72 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -31.11 368.73 -13.02 -44.12 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.50 Total: 0.97 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 0.17 Total: -7.13 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.20 Total: -45.97 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -8.02 Total: -14.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.11 -13.02 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.877 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds