Wall clock time and date at job start Tue Mar 31 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76202 * 100.00052 * 2 1 4 4 N 1.28540 * 125.02930 * 179.97438 * 3 2 1 5 5 N 1.37783 * 116.16967 * 180.02562 * 4 3 2 6 6 C 1.46494 * 122.69397 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47257 * 263.99148 * 6 5 4 8 8 C 1.46900 * 110.99601 * 74.75989 * 7 6 5 9 9 C 1.50707 * 109.47268 * 190.00252 * 8 7 6 10 10 H 1.07997 * 119.99942 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00211 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99906 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47291 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47632 * 120.00003 * 13 11 9 16 16 H 1.48500 * 109.47040 * 239.99923 * 13 11 9 17 17 C 1.46899 * 111.00594 * 198.71273 * 7 6 5 18 18 H 1.08995 * 109.47318 * 188.65351 * 17 7 6 19 19 C 1.53005 * 109.46717 * 68.65418 * 17 7 6 20 20 C 1.53003 * 109.47032 * 308.66019 * 17 7 6 21 21 C 1.53001 * 117.49509 * 253.99559 * 20 17 7 22 22 C 1.52998 * 60.00014 * 252.51172 * 21 20 17 23 23 C 1.33511 * 114.61342 * 359.97438 * 5 4 3 24 24 S 1.71195 * 125.65293 * 179.97438 * 23 5 4 25 25 S 1.75932 * 125.03366 * 0.02562 * 3 2 1 26 26 H 1.08991 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47263 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46888 * 60.00150 * 1 2 3 29 29 H 1.08995 * 109.47367 * 23.99046 * 6 5 4 30 30 H 1.08996 * 109.47364 * 143.99931 * 6 5 4 31 31 H 1.09000 * 109.47416 * 310.00436 * 8 7 6 32 32 H 1.09001 * 109.47277 * 70.00486 * 8 7 6 33 33 H 0.97002 * 120.00011 * 180.02562 * 12 11 9 34 34 H 1.09000 * 109.47057 * 57.71873 * 19 17 7 35 35 H 1.09004 * 109.46499 * 177.71561 * 19 17 7 36 36 H 1.08997 * 109.47283 * 297.71992 * 19 17 7 37 37 H 1.08999 * 115.54762 * 39.70308 * 20 17 7 38 38 H 1.09004 * 117.50071 * 0.02562 * 21 20 17 39 39 H 1.09001 * 117.49255 * 145.01785 * 21 20 17 40 40 H 1.09004 * 117.50005 * 252.51296 * 22 21 20 41 41 H 1.08996 * 117.49412 * 107.49038 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 3.2806 2.2791 0.0005 5 7 3.3081 3.6566 0.0009 6 6 4.5564 4.4232 0.0009 7 7 4.8982 4.8026 1.3784 8 6 5.4130 3.6498 2.1295 9 6 5.5201 4.0086 3.5893 10 1 5.2339 4.9942 3.9255 11 6 5.9835 3.0786 4.4955 12 7 6.3316 1.8782 4.0861 13 14 6.1156 3.5231 6.3050 14 1 5.6650 4.9239 6.5049 15 1 5.2599 2.6087 7.1032 16 1 7.5275 3.3902 6.7456 17 6 5.8588 5.9137 1.3957 18 1 6.2114 6.0734 2.4146 19 6 5.1769 7.1854 0.8868 20 6 7.0463 5.5754 0.4920 21 6 8.3659 5.2016 1.1701 22 6 8.2209 6.5555 0.4725 23 6 2.1056 4.2367 0.0003 24 16 1.8113 5.9232 0.0012 25 16 0.8727 2.9800 0.0006 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 5.3573 3.8135 -0.4172 30 1 4.4309 5.3220 -0.6028 31 1 4.7330 2.8062 2.0116 32 1 6.3978 3.3786 1.7488 33 1 6.6573 1.2238 4.7238 34 1 4.3069 7.4038 1.5062 35 1 5.8777 8.0187 0.9378 36 1 4.8602 7.0395 -0.1459 37 1 6.7979 5.0687 -0.4405 38 1 8.3880 5.1963 2.2599 39 1 8.9860 4.4486 0.6836 40 1 8.7457 6.6934 -0.4729 41 1 8.1477 7.4414 1.1034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069737766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:20 Heat of formation + Delta-G solvation = 119.009425 kcal Electronic energy + Delta-G solvation = -24176.931691 eV Core-core repulsion = 20859.840529 eV Total energy + Delta-G solvation = -3317.091161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48216 -38.48264 -35.33269 -33.30681 -32.47791 -29.99980 -29.63313 -28.17419 -26.54778 -24.92042 -23.19612 -22.23028 -21.83413 -21.53975 -20.06068 -18.94528 -18.05101 -16.75186 -16.43270 -15.94366 -15.60892 -15.12573 -14.77713 -14.68095 -14.21516 -13.98336 -13.92861 -13.65598 -13.36838 -12.71321 -12.62369 -12.32412 -12.06457 -11.92145 -11.80265 -11.75924 -11.35834 -11.12452 -11.09399 -10.96796 -10.73789 -10.60295 -10.44594 -10.34572 -10.14736 -9.89414 -9.83805 -9.43804 -9.24680 -8.50382 -8.32677 -7.64153 -7.53873 -7.32300 -6.07601 -4.08957 0.24525 0.38248 0.48472 0.89044 1.30887 1.80769 2.19900 2.46620 3.26545 3.34771 3.39833 4.17887 4.35697 4.41672 4.63323 4.65637 4.72944 5.04250 5.26693 5.27704 5.30378 5.33984 5.36952 5.45232 5.75513 5.87785 5.92858 5.95877 6.05758 6.19318 6.35567 6.44250 6.60655 6.76456 6.84864 7.07095 7.14454 7.28410 7.67400 7.92890 8.03622 8.38114 8.97575 9.54731 11.02695 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.004847 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.783642 B = 5775.607901 C = 7410.214413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 S 0.063 5.937 3 C 0.017 3.983 4 N -0.202 5.202 5 N -0.316 5.316 6 C 0.284 3.716 7 N -0.528 5.528 8 C 0.189 3.811 9 C -0.506 4.506 10 H 0.063 0.937 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.129 3.871 18 H 0.102 0.898 19 C -0.138 4.138 20 C -0.183 4.183 21 C -0.163 4.163 22 C -0.179 4.179 23 C 0.236 3.764 24 S -0.455 6.455 25 S 0.116 5.884 26 H 0.126 0.874 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.030 0.970 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 -1.944 -11.560 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.349 4.349 2 S 0.288 5.712 3 C -0.391 4.391 4 N -0.021 5.021 5 N -0.109 5.109 6 C 0.071 3.929 7 N -0.253 5.253 8 C 0.065 3.935 9 C -0.544 4.544 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.020 3.980 18 H 0.120 0.880 19 C -0.195 4.195 20 C -0.203 4.203 21 C -0.199 4.199 22 C -0.217 4.217 23 C -0.132 4.132 24 S -0.325 6.325 25 S 0.348 5.652 26 H 0.144 0.856 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.701 -1.982 -11.246 13.774 hybrid contribution 0.786 0.046 0.801 1.123 sum -6.915 -1.937 -10.445 12.675 Atomic orbital electron populations 1.24020 0.95112 1.08599 1.07166 1.86042 1.05032 0.89288 1.90836 1.29974 0.95721 1.06318 1.07063 1.74449 1.19859 0.91574 1.16250 1.49614 1.07333 1.00420 1.53517 1.22556 0.80279 0.94400 0.95624 1.62053 1.43746 1.11177 1.08283 1.19884 0.94078 0.86569 0.92980 1.21090 1.42677 0.99288 0.91395 0.91895 1.24932 0.95531 0.94926 0.98868 1.69973 1.44251 1.04484 1.34485 0.86518 0.77587 0.78676 0.85159 1.19615 1.21060 1.21043 1.21230 0.87497 0.89787 0.99471 0.87996 1.21836 1.00493 0.95948 1.01265 1.23082 0.91701 1.04225 1.01257 1.22924 0.99179 0.97079 1.00767 1.22839 1.02454 0.94180 1.02196 1.28655 0.89685 1.04490 0.90332 1.92755 1.86423 0.90179 1.63141 1.86211 1.08877 0.92812 1.77257 0.85594 0.88516 0.88721 0.90740 0.86274 0.95182 0.97694 0.93008 0.91363 0.93118 0.93082 0.89035 0.87926 0.89665 0.89639 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.46 101.05 0.96 -0.19 16 2 S 0.06 0.70 22.96 -107.50 -2.47 -1.77 16 3 C 0.02 0.25 7.79 51.38 0.40 0.66 16 4 N -0.20 -3.64 10.95 30.92 0.34 -3.30 16 5 N -0.32 -5.80 3.36 -63.92 -0.21 -6.01 16 6 C 0.28 5.16 4.18 -63.32 -0.26 4.89 16 7 N -0.53 -10.96 4.54 -231.97 -1.05 -12.01 16 8 C 0.19 4.73 4.50 -4.97 -0.02 4.71 16 9 C -0.51 -13.81 8.33 -34.44 -0.29 -14.10 16 10 H 0.06 1.74 7.21 -52.49 -0.38 1.36 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 13 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.13 2.36 2.34 -67.71 -0.16 2.20 16 18 H 0.10 2.11 6.42 -51.93 -0.33 1.78 16 19 C -0.14 -2.23 9.03 37.16 0.34 -1.89 16 20 C -0.18 -2.97 4.02 -90.62 -0.36 -3.33 16 21 C -0.16 -2.69 9.68 -26.73 -0.26 -2.95 16 22 C -0.18 -2.49 9.85 -26.73 -0.26 -2.75 16 23 C 0.24 4.19 7.53 53.49 0.40 4.59 16 24 S -0.45 -8.64 30.00 -107.50 -3.23 -11.86 16 25 S 0.12 1.59 21.80 -107.50 -2.34 -0.75 16 26 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.10 0.63 8.00 -51.91 -0.42 0.22 16 28 H 0.09 0.51 8.00 -51.91 -0.42 0.09 16 29 H 0.07 1.33 6.90 -51.93 -0.36 0.97 16 30 H 0.12 2.01 5.43 -51.93 -0.28 1.73 16 31 H 0.03 0.83 7.01 -51.93 -0.36 0.47 16 32 H 0.01 0.14 6.95 -51.93 -0.36 -0.22 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.71 7.75 -51.93 -0.40 0.31 16 36 H 0.05 0.79 6.45 -51.93 -0.34 0.46 16 37 H 0.09 1.44 6.23 -51.93 -0.32 1.11 16 38 H 0.10 1.91 8.08 -51.93 -0.42 1.49 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.23 7.97 -51.93 -0.41 0.81 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -31.57 373.20 -12.87 -44.45 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.63 Total: 0.94 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 0.38 Total: -6.61 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.19 Total: -46.51 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -8.04 Total: -14.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.57 -12.87 -44.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.455 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds