Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99961 * 2 1 4 4 H 1.48498 * 109.47413 * 270.00635 * 3 2 1 5 5 H 1.48508 * 109.46724 * 30.00702 * 3 2 1 6 6 H 1.48493 * 109.47068 * 150.00304 * 3 2 1 7 7 C 1.37875 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00489 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99874 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47175 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.35985 * 117.00127 * 180.02562 * 11 10 9 13 13 C 1.38793 * 120.49800 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.44899 * 179.97438 * 13 12 11 15 15 C 1.38081 * 119.35675 * 359.97438 * 14 13 12 16 16 N 1.31960 * 120.94943 * 359.97438 * 15 14 13 17 17 C 1.32272 * 121.69603 * 0.02562 * 16 15 14 18 18 N 1.39573 * 119.72873 * 180.02562 * 17 16 15 19 19 C 1.34783 * 120.00065 * 359.97438 * 18 17 16 20 20 O 1.21283 * 119.99880 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00113 * 179.97438 * 19 18 17 22 22 C 1.50699 * 109.47196 * 180.02562 * 21 19 18 23 23 C 1.38213 * 120.01454 * 99.99733 * 22 21 19 24 24 C 1.38218 * 120.02599 * 179.97438 * 23 22 21 25 25 C 1.38263 * 120.05106 * 0.03102 * 24 23 22 26 26 C 1.38175 * 120.02709 * 359.97438 * 25 24 23 27 27 C 1.38437 * 120.00876 * 279.72510 * 22 21 19 28 28 F 1.35097 * 120.02938 * 359.97438 * 27 22 21 29 29 H 0.97006 * 120.00443 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47079 * 59.99501 * 9 7 2 31 31 H 1.09001 * 109.46724 * 299.99835 * 9 7 2 32 32 H 1.09004 * 109.47159 * 59.99997 * 10 9 7 33 33 H 1.09001 * 109.47525 * 299.99793 * 10 9 7 34 34 H 1.08002 * 120.77284 * 0.24595 * 13 12 11 35 35 H 1.08001 * 120.31757 * 180.02562 * 14 13 12 36 36 H 1.07996 * 119.53007 * 179.97438 * 15 14 13 37 37 H 0.97005 * 120.00328 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.47030 * 300.00534 * 21 19 18 39 39 H 1.08999 * 109.47075 * 59.99585 * 21 19 18 40 40 H 1.08004 * 119.99027 * 0.02562 * 23 22 21 41 41 H 1.08008 * 119.97798 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.99224 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.01539 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 8 5.4505 -2.6365 -0.0021 12 6 6.0678 -3.8481 -0.0027 13 6 5.3221 -5.0187 -0.0028 14 6 5.9959 -6.2318 -0.0039 15 6 7.3767 -6.2392 -0.0055 16 7 8.0614 -5.1112 -0.0065 17 6 7.4599 -3.9331 -0.0055 18 7 8.2247 -2.7655 -0.0071 19 6 9.5704 -2.8413 -0.0092 20 8 10.1168 -3.9241 -0.0092 21 6 10.3961 -1.5806 -0.0116 22 6 11.8599 -1.9389 -0.0143 23 6 12.5785 -1.9021 -1.1943 24 6 13.9212 -2.2301 -1.1970 25 6 14.5469 -2.5960 -0.0196 26 6 13.8305 -2.6336 1.1614 27 6 12.4866 -2.2995 1.1662 28 9 11.7866 -2.3300 2.3213 29 1 -0.4851 0.8401 0.0004 30 1 3.8752 -0.6803 0.8888 31 1 3.8745 -0.6800 -0.8912 32 1 3.6578 -3.1505 -0.8907 33 1 3.6586 -3.1502 0.8893 34 1 4.2426 -4.9861 -0.0063 35 1 5.4456 -7.1611 -0.0044 36 1 7.9040 -7.1817 -0.0060 37 1 7.7877 -1.8995 -0.0067 38 1 10.1638 -0.9958 -0.9017 39 1 10.1667 -0.9944 0.8783 40 1 12.0909 -1.6161 -2.1147 41 1 14.4819 -2.2015 -2.1197 42 1 15.5960 -2.8525 -0.0228 43 1 14.3193 -2.9198 2.0809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069744445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = -48.659372 kcal Electronic energy + Delta-G solvation = -28513.025890 eV Core-core repulsion = 24245.513071 eV Total energy + Delta-G solvation = -4267.512819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.07008 -40.97349 -39.76865 -38.77086 -37.84592 -34.88651 -33.45977 -33.29140 -31.70890 -30.97918 -30.79356 -29.50201 -27.79917 -25.66052 -23.82253 -23.06782 -22.87146 -22.11138 -20.81232 -20.25530 -18.48618 -17.87356 -17.61752 -17.32845 -16.77233 -16.58682 -16.04272 -15.93942 -15.89346 -15.51829 -15.14344 -14.93744 -14.46864 -14.29058 -14.09469 -13.93059 -13.81542 -13.50289 -13.39475 -13.09966 -12.59182 -12.51683 -12.46496 -12.20800 -12.08942 -11.82623 -11.33489 -11.26049 -11.00325 -10.75993 -10.43648 -10.27061 -10.17065 -9.94909 -9.46229 -9.32115 -9.28052 -9.07521 -8.88968 -8.70963 -7.74260 -6.21601 -4.23452 0.85206 0.93700 1.15031 1.38911 2.63365 2.78989 3.21073 3.29071 3.32028 3.34878 3.41210 3.95067 4.02767 4.19619 4.30595 4.36841 4.43397 4.63771 4.76346 4.84630 4.90133 5.00622 5.06222 5.12108 5.12215 5.18522 5.22621 5.41538 5.55986 5.74437 5.75690 5.77175 5.85055 5.99853 6.00379 6.09508 6.13048 6.26451 6.34833 6.52662 6.60233 6.91888 7.10066 7.18070 7.48231 7.61368 7.98878 8.28788 8.29343 8.78555 9.37900 10.90774 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002486 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.921796 B =11258.178383 C =12947.168762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.073 3.927 11 O -0.320 6.320 12 C 0.066 3.934 13 C -0.146 4.146 14 C -0.159 4.159 15 C 0.077 3.923 16 N -0.444 5.444 17 C 0.329 3.671 18 N -0.653 5.653 19 C 0.506 3.494 20 O -0.470 6.470 21 C -0.103 4.103 22 C -0.100 4.100 23 C -0.079 4.079 24 C -0.131 4.131 25 C -0.091 4.091 26 C -0.155 4.155 27 C 0.118 3.882 28 F -0.136 7.136 29 H 0.267 0.733 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.423 0.577 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.933 -5.671 -1.261 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.001 4.001 11 O -0.233 6.233 12 C 0.015 3.985 13 C -0.172 4.172 14 C -0.180 4.180 15 C -0.080 4.080 16 N -0.159 5.159 17 C 0.096 3.904 18 N -0.301 5.301 19 C 0.291 3.709 20 O -0.339 6.339 21 C -0.143 4.143 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.149 4.149 25 C -0.109 4.109 26 C -0.174 4.174 27 C 0.098 3.902 28 F -0.114 7.114 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.261 0.739 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 27.186 -6.109 -1.211 27.890 hybrid contribution -1.343 1.118 0.228 1.762 sum 25.843 -4.991 -0.983 26.339 Atomic orbital electron populations 1.69888 1.06289 1.27312 1.49838 1.24941 0.94776 0.99239 0.94058 0.86750 0.80418 0.83287 0.78736 1.20048 1.21145 1.18776 1.20808 0.88221 0.94977 1.52706 0.90729 1.19584 0.97043 0.89960 0.97900 1.23141 0.73951 1.02270 1.00689 1.86043 1.24582 1.24778 1.87875 1.19545 0.91010 0.86996 1.00987 1.21636 1.01279 0.91399 1.02929 1.21910 0.95509 0.98276 1.02337 1.22428 0.91143 0.95576 0.98843 1.67624 1.38489 0.96311 1.13475 1.17796 0.84549 0.87194 1.00814 1.43454 1.06291 1.07848 1.72520 1.20596 0.81723 0.91445 0.77122 1.90814 1.70510 1.29038 1.43562 1.20612 0.90805 0.96571 1.06287 1.19305 0.94780 1.03206 0.92848 1.20928 0.94168 0.97949 0.96665 1.21161 0.94772 1.00489 0.98506 1.21009 1.00043 0.98111 0.91785 1.21123 0.92645 1.03435 1.00165 1.17518 0.90164 1.00958 0.81527 1.91506 1.78980 1.93869 1.47090 0.92361 0.95366 0.95801 0.92344 0.92304 0.83575 0.84664 0.82587 0.73901 0.86975 0.87257 0.85005 0.85279 0.85097 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.53 -14.22 9.66 -34.44 -0.33 -14.55 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 10 C 0.07 1.37 4.70 37.15 0.17 1.55 16 11 O -0.32 -5.52 9.39 -19.69 -0.18 -5.70 16 12 C 0.07 1.06 6.72 -38.92 -0.26 0.79 16 13 C -0.15 -2.07 9.14 -39.18 -0.36 -2.43 16 14 C -0.16 -1.96 10.10 -39.44 -0.40 -2.36 16 15 C 0.08 1.04 11.17 -17.55 -0.20 0.84 16 16 N -0.44 -7.36 7.88 -12.23 -0.10 -7.45 16 17 C 0.33 5.31 7.45 -154.44 -1.15 4.16 16 18 N -0.65 -9.08 5.39 -11.29 -0.06 -9.14 16 19 C 0.51 6.98 7.78 -10.98 -0.09 6.89 16 20 O -0.47 -8.19 14.21 5.55 0.08 -8.11 16 21 C -0.10 -1.00 5.56 -29.03 -0.16 -1.16 16 22 C -0.10 -1.06 4.43 -104.56 -0.46 -1.52 16 23 C -0.08 -0.69 9.67 -39.60 -0.38 -1.07 16 24 C -0.13 -1.00 10.04 -39.58 -0.40 -1.40 16 25 C -0.09 -0.70 10.04 -39.60 -0.40 -1.10 16 26 C -0.15 -1.45 10.03 -39.51 -0.40 -1.84 16 27 C 0.12 1.35 7.14 -39.42 -0.28 1.07 16 28 F -0.14 -1.77 16.66 2.25 0.04 -1.74 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 30 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 32 H 0.06 1.05 7.69 -51.93 -0.40 0.66 16 33 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 34 H 0.15 1.94 6.44 -52.49 -0.34 1.60 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.42 4.98 8.05 -40.82 -0.33 4.65 16 38 H 0.11 0.76 8.00 -51.93 -0.42 0.34 16 39 H 0.11 0.92 7.94 -51.93 -0.41 0.51 16 40 H 0.13 0.88 8.04 -52.48 -0.42 0.46 16 41 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -34.30 374.43 -8.97 -43.27 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.18 Total: 3.41 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -5.31 Total: -10.49 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.62 Total: -42.23 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.11 Total: -13.81 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.30 -8.97 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069744445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.389 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds