Wall clock time and date at job start Tue Mar 31 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99899 * 2 1 4 4 H 1.48499 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46775 * 299.99860 * 3 2 1 6 6 H 1.48498 * 109.47066 * 59.99787 * 3 2 1 7 7 C 1.37875 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00018 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47413 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99840 * 270.00083 * 10 9 7 12 12 C 1.50700 * 109.46946 * 269.99575 * 11 10 9 13 13 C 1.38234 * 119.61547 * 94.73133 * 12 11 10 14 14 C 1.38630 * 119.15953 * 179.75306 * 13 12 11 15 15 C 1.38670 * 118.41759 * 0.50519 * 14 13 12 16 16 C 1.38186 * 119.16617 * 359.73648 * 15 14 13 17 17 N 1.31842 * 119.61874 * 275.00040 * 12 11 10 18 18 C 1.34775 * 120.00067 * 89.99613 * 10 9 7 19 19 O 1.21279 * 120.00113 * 180.02562 * 18 10 9 20 20 C 1.50706 * 120.00139 * 0.02562 * 18 10 9 21 21 O 1.42893 * 109.47156 * 179.97438 * 20 18 10 22 22 C 1.35956 * 117.00026 * 179.97438 * 21 20 18 23 23 C 1.38657 * 120.06128 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.96964 * 180.02562 * 23 22 21 25 25 C 1.38265 * 120.09281 * 359.97438 * 24 23 22 26 26 C 1.38248 * 120.12705 * 0.02562 * 25 24 23 27 27 C 1.38332 * 120.03366 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.05240 * 180.02562 * 27 26 25 29 29 H 0.97002 * 120.00216 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47242 * 60.00355 * 9 7 2 31 31 H 1.09005 * 109.47310 * 300.00227 * 9 7 2 32 32 H 1.08994 * 109.47150 * 29.99765 * 11 10 9 33 33 H 1.08998 * 109.46995 * 149.99818 * 11 10 9 34 34 H 1.07998 * 120.41598 * 359.97438 * 13 12 11 35 35 H 1.07994 * 120.79064 * 180.26032 * 14 13 12 36 36 H 1.08005 * 120.41773 * 179.70948 * 15 14 13 37 37 H 1.08003 * 119.62008 * 179.97438 * 16 15 14 38 38 H 1.08994 * 109.46839 * 59.99224 * 20 18 10 39 39 H 1.09001 * 109.46752 * 299.99815 * 20 18 10 40 40 H 1.08004 * 120.01774 * 0.03769 * 23 22 21 41 41 H 1.08000 * 119.95526 * 180.27319 * 24 23 22 42 42 H 1.08001 * 119.93128 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.98480 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6792 -4.1694 -1.2693 12 6 1.7625 -5.2836 -1.7043 13 6 0.7284 -5.0144 -2.5812 14 6 -0.1060 -6.0475 -2.9791 15 6 0.1255 -7.3163 -2.4696 16 6 1.1760 -7.5085 -1.5927 17 7 1.9529 -6.5028 -1.2399 18 6 2.6412 -4.1248 1.1666 19 8 3.4296 -5.0463 1.1667 20 6 2.1511 -3.5524 2.4718 21 8 2.7543 -4.2585 3.5579 22 6 2.4166 -3.8635 4.8143 23 6 1.5243 -2.8182 4.9974 24 6 1.1829 -2.4180 6.2752 25 6 1.7295 -3.0587 7.3717 26 6 2.6196 -4.1014 7.1936 27 6 2.9651 -4.5064 5.9168 28 9 3.8345 -5.5257 5.7423 29 1 -0.4850 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 2.6869 -3.3878 -2.0289 33 1 3.6886 -4.5593 -1.1390 34 1 0.5747 -4.0127 -2.9543 35 1 -0.9194 -5.8677 -3.6664 36 1 -0.5076 -8.1437 -2.7542 37 1 1.3627 -8.4936 -1.1911 38 1 1.0675 -3.6548 2.5293 39 1 2.4200 -2.4977 2.5297 40 1 1.0960 -2.3172 4.1419 41 1 0.4844 -1.6067 6.4176 42 1 1.4611 -2.7435 8.3692 43 1 3.0449 -4.6006 8.0517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069769642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:49 Heat of formation + Delta-G solvation = -48.337205 kcal Electronic energy + Delta-G solvation = -29403.365434 eV Core-core repulsion = 25135.866586 eV Total energy + Delta-G solvation = -4267.498849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.59485 -40.20341 -39.86486 -38.71485 -37.09630 -35.17090 -32.97946 -32.22827 -31.57973 -30.64768 -30.13889 -28.34534 -27.52595 -25.69572 -23.42848 -23.03279 -22.71910 -22.36717 -21.68200 -18.75412 -18.39000 -17.04300 -16.90287 -16.71567 -16.38282 -16.12728 -16.02622 -15.71852 -15.47803 -15.32555 -15.02667 -14.79162 -14.50689 -14.27694 -13.97207 -13.59963 -13.25396 -13.06719 -12.75761 -12.71942 -12.52528 -12.31102 -12.06950 -11.80041 -11.63573 -11.53596 -11.39258 -11.12201 -11.01355 -10.88678 -10.80277 -10.29811 -9.91198 -9.68306 -9.18591 -9.14675 -8.91586 -8.80073 -8.66988 -8.10017 -7.89258 -6.32202 -4.41071 1.15513 1.26023 1.30717 1.49411 2.93151 3.13463 3.22925 3.24916 3.30067 3.62120 3.86048 4.19931 4.25958 4.39686 4.57625 4.76296 4.86543 4.95080 4.99579 5.01456 5.17103 5.21633 5.22619 5.24735 5.35186 5.45742 5.54524 5.67879 5.75933 5.80489 5.96901 6.03402 6.07490 6.18203 6.21556 6.32510 6.35809 6.40893 6.55127 6.67965 6.89231 6.97877 7.31527 7.46690 7.63016 7.88667 8.13045 8.30583 8.65561 8.89144 9.28669 10.74057 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.007074 B = 0.004298 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3957.145736 B = 6512.620337 C = 9529.580917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.235 3.765 10 N -0.589 5.589 11 C 0.171 3.829 12 C 0.118 3.882 13 C -0.155 4.155 14 C -0.081 4.081 15 C -0.181 4.181 16 C 0.093 3.907 17 N -0.458 5.458 18 C 0.521 3.479 19 O -0.528 6.528 20 C 0.046 3.954 21 O -0.286 6.286 22 C 0.107 3.893 23 C -0.182 4.182 24 C -0.088 4.088 25 C -0.138 4.138 26 C -0.120 4.120 27 C 0.065 3.935 28 F -0.133 7.133 29 H 0.266 0.734 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.145 0.855 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -6.747 4.320 8.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.115 3.885 10 N -0.322 5.322 11 C 0.047 3.953 12 C -0.022 4.022 13 C -0.176 4.176 14 C -0.107 4.107 15 C -0.201 4.201 16 C -0.065 4.065 17 N -0.167 5.167 18 C 0.307 3.693 19 O -0.404 6.404 20 C -0.032 4.032 21 O -0.198 6.198 22 C 0.059 3.941 23 C -0.201 4.201 24 C -0.106 4.106 25 C -0.156 4.156 26 C -0.139 4.139 27 C 0.045 3.955 28 F -0.111 7.111 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.163 0.837 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.264 -7.440 4.821 8.955 hybrid contribution -0.651 1.240 -0.767 1.597 sum -1.916 -6.200 4.054 7.651 Atomic orbital electron populations 1.69926 1.06017 1.27422 1.49315 1.24938 0.94839 0.99336 0.94475 0.86473 0.80286 0.83109 0.77890 1.19505 1.20744 1.20733 1.21555 0.93860 0.90243 1.52590 0.91669 1.19518 0.87476 0.82628 0.98873 1.47997 1.46184 1.34800 1.03220 1.20137 0.96533 0.92016 0.86619 1.21887 0.94953 0.92830 0.92484 1.22120 0.95814 1.00552 0.99085 1.21547 0.98311 0.92745 0.98107 1.22103 0.99926 0.98015 1.00058 1.22778 0.91318 0.98060 0.94344 1.67650 1.27587 0.99688 1.21811 1.19717 0.81880 0.82924 0.84786 1.90704 1.34172 1.28376 1.87134 1.22668 0.98320 0.97797 0.84429 1.86175 1.65463 1.57171 1.10968 1.19142 0.95566 0.94648 0.84733 1.21399 1.00617 0.98428 0.99666 1.21043 0.98836 0.99166 0.91541 1.20878 0.98595 0.96830 0.99301 1.20956 0.99579 0.98748 0.94609 1.17012 0.95809 0.90738 0.91980 1.91507 1.66858 1.56586 1.96162 0.92422 0.94187 0.94731 0.88358 0.88944 0.84410 0.85098 0.85296 0.83233 0.89314 0.87452 0.83726 0.85030 0.85120 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.79 13.29 55.43 0.74 -22.05 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 19.40 29.54 -169.99 -5.02 14.38 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.08 9.28 -34.44 -0.32 -13.39 16 8 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.23 5.15 4.97 -5.19 -0.03 5.13 16 10 N -0.59 -12.08 2.44 -176.43 -0.43 -12.51 16 11 C 0.17 3.15 5.71 -5.19 -0.03 3.12 16 12 C 0.12 2.05 6.36 -82.59 -0.53 1.53 16 13 C -0.16 -2.32 9.72 -39.44 -0.38 -2.71 16 14 C -0.08 -1.03 10.18 -39.28 -0.40 -1.43 16 15 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 17 N -0.46 -8.34 10.27 -9.47 -0.10 -8.44 16 18 C 0.52 11.25 7.75 -10.98 -0.09 11.17 16 19 O -0.53 -12.80 16.08 -14.35 -0.23 -13.03 16 20 C 0.05 0.87 3.77 36.01 0.14 1.01 16 21 O -0.29 -5.69 9.53 -39.51 -0.38 -6.07 16 22 C 0.11 1.81 6.69 -39.18 -0.26 1.54 16 23 C -0.18 -2.65 9.04 -39.45 -0.36 -3.01 16 24 C -0.09 -1.04 10.04 -39.59 -0.40 -1.44 16 25 C -0.14 -1.48 10.04 -39.57 -0.40 -1.88 16 26 C -0.12 -1.46 10.02 -39.54 -0.40 -1.85 16 27 C 0.06 1.02 7.31 -39.30 -0.29 0.73 16 28 F -0.13 -2.32 17.11 2.25 0.04 -2.28 16 29 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.03 0.78 6.44 -51.93 -0.33 0.45 16 32 H 0.10 1.65 7.97 -51.93 -0.41 1.23 16 33 H 0.09 1.78 7.42 -51.93 -0.39 1.40 16 34 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.09 1.56 6.92 -51.93 -0.36 1.20 16 39 H 0.11 2.03 7.52 -51.93 -0.39 1.64 16 40 H 0.15 2.08 6.30 -52.48 -0.33 1.75 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -31.05 380.40 -9.21 -40.26 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.14 Total: 5.37 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -4.42 Total: -1.37 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.21 Total: -43.00 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.61 Total: -19.10 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.05 -9.21 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069769642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.079 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds