Wall clock time and date at job start Tue Mar 31 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86801 * 120.00214 * 2 1 4 4 H 1.48501 * 109.46836 * 269.99914 * 3 2 1 5 5 H 1.48495 * 109.47208 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.46792 * 150.00044 * 3 2 1 7 7 C 1.39055 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99866 * 359.97438 * 7 2 1 9 9 N 1.36871 * 119.99846 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00119 * 180.02562 * 9 7 2 11 11 O 1.21590 * 119.99697 * 359.97438 * 10 9 7 12 12 C 1.47722 * 120.00115 * 180.02562 * 10 9 7 13 13 C 1.39667 * 120.15232 * 359.97438 * 12 10 9 14 14 C 1.37916 * 119.84824 * 179.97438 * 13 12 10 15 15 C 1.38395 * 120.15170 * 0.26459 * 14 13 12 16 16 C 1.38364 * 120.30245 * 359.47918 * 15 14 13 17 17 S 1.76199 * 119.92168 * 180.26030 * 16 15 14 18 18 O 1.42103 * 104.27858 * 26.32706 * 17 16 15 19 19 O 1.42097 * 104.27669 * 154.18527 * 17 16 15 20 20 C 1.81400 * 104.45100 * 270.25525 * 17 16 15 21 21 C 1.50696 * 109.47386 * 180.02562 * 20 17 16 22 22 C 1.38235 * 120.00105 * 269.73275 * 21 20 17 23 23 C 1.38230 * 120.00302 * 179.76461 * 22 21 20 24 24 C 1.38241 * 120.00000 * 0.50337 * 23 22 21 25 25 C 1.38238 * 119.99407 * 359.74644 * 24 23 22 26 26 C 1.38230 * 120.00136 * 359.97438 * 25 24 23 27 27 C 1.37953 * 120.15010 * 0.51750 * 16 15 14 28 28 H 0.96995 * 119.99146 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00144 * 359.97438 * 9 7 2 30 30 H 1.07999 * 120.07572 * 0.02562 * 13 12 10 31 31 H 1.08002 * 119.92149 * 179.97438 * 14 13 12 32 32 H 1.08000 * 119.85108 * 179.74765 * 15 14 13 33 33 H 1.08997 * 109.46990 * 300.00674 * 20 17 16 34 34 H 1.09006 * 109.46985 * 60.00298 * 20 17 16 35 35 H 1.08007 * 119.99914 * 359.97438 * 22 21 20 36 36 H 1.07998 * 120.00507 * 180.22499 * 23 22 21 37 37 H 1.07991 * 120.00413 * 179.72330 * 24 23 22 38 38 H 1.08004 * 119.99562 * 179.97438 * 25 24 23 39 39 H 1.08004 * 120.00098 * 179.97438 * 26 25 24 40 40 H 1.08007 * 120.07685 * 179.76388 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0463 -1.4001 5 1 1.4453 2.6527 0.7000 6 1 3.5453 1.4400 0.7000 7 6 2.0089 -1.2043 -0.0005 8 1 1.4688 -2.1395 -0.0005 9 7 3.3776 -1.2044 0.0000 10 6 4.0514 -2.3716 -0.0011 11 8 3.4434 -3.4245 -0.0020 12 6 5.5286 -2.3716 0.0001 13 6 6.2303 -1.1640 0.0017 14 6 7.6094 -1.1714 0.0033 15 6 8.2981 -2.3717 -0.0022 16 6 7.6094 -3.5718 0.0015 17 16 8.4965 -5.0942 0.0013 18 8 9.7411 -4.7747 0.6082 19 8 7.6034 -6.0202 0.6048 20 6 8.7263 -5.4840 -1.7553 21 6 9.4816 -6.7813 -1.8874 22 6 10.8624 -6.7737 -1.9518 23 6 11.5556 -7.9640 -2.0681 24 6 10.8674 -9.1613 -2.1304 25 6 9.4863 -9.1685 -2.0712 26 6 8.7935 -7.9786 -1.9491 27 6 6.2299 -3.5790 -0.0001 28 1 -0.4848 0.8401 -0.0004 29 1 3.8627 -0.3643 0.0004 30 1 5.6940 -0.2265 0.0026 31 1 8.1531 -0.2382 0.0041 32 1 9.3781 -2.3718 -0.0051 33 1 7.7530 -5.5800 -2.2365 34 1 9.2910 -4.6840 -2.2342 35 1 11.3999 -5.8379 -1.9079 36 1 12.6345 -7.9584 -2.1148 37 1 11.4086 -10.0910 -2.2257 38 1 8.9486 -10.1039 -2.1203 39 1 7.7145 -7.9842 -1.9033 40 1 5.6935 -4.5165 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069811098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:08 Heat of formation + Delta-G solvation = -46.585689 kcal Electronic energy + Delta-G solvation = -26315.439276 eV Core-core repulsion = 22380.677798 eV Total energy + Delta-G solvation = -3934.761478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -39.63973 -39.59277 -37.69055 -37.17158 -36.00080 -34.28672 -33.42379 -32.19600 -31.26987 -31.16737 -30.95548 -27.73963 -25.59109 -23.49131 -22.97856 -22.74399 -21.91776 -20.14234 -19.19797 -18.72931 -17.59823 -17.29001 -16.45867 -16.23342 -16.02737 -15.83421 -15.42051 -15.28997 -15.11537 -14.57769 -14.02294 -14.00119 -13.78437 -13.68171 -13.55890 -13.15803 -13.03481 -13.01005 -12.63937 -12.40808 -12.25105 -12.14324 -12.05710 -11.73961 -11.49937 -11.39182 -11.38930 -11.28452 -10.78013 -10.72470 -10.16996 -9.83356 -9.44493 -9.29334 -9.05248 -8.89503 -8.79136 -8.41462 -6.56795 -4.00132 -0.22140 0.73104 1.00291 1.03562 1.15240 2.74988 2.86082 2.90692 3.00457 3.12883 3.39636 3.69884 3.88759 3.90926 4.08538 4.17350 4.28695 4.48170 4.64968 4.72328 4.77469 4.83806 4.91969 5.08477 5.09497 5.10248 5.12383 5.22739 5.35426 5.45513 5.58133 5.67382 5.72300 5.89526 6.04579 6.06417 6.10753 6.14908 6.25110 6.35891 6.58898 6.78360 7.32150 7.92025 8.35125 8.70740 9.16412 9.60782 10.54542 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.002446 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.578581 B =11444.836530 C =12152.152603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.044 3.956 3 Si 0.878 3.122 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.299 4.299 8 H 0.126 0.874 9 N -0.566 5.566 10 C 0.470 3.530 11 O -0.574 6.574 12 C -0.112 4.112 13 C -0.058 4.058 14 C -0.139 4.139 15 C -0.030 4.030 16 C -0.666 4.666 17 S 2.496 3.504 18 O -0.934 6.934 19 O -0.925 6.925 20 C -0.565 4.565 21 C -0.095 4.095 22 C -0.104 4.104 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.102 4.102 27 C 0.019 3.981 28 H 0.279 0.721 29 H 0.371 0.629 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.910 -8.241 -6.169 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.162 4.162 3 Si 0.704 3.296 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.428 4.428 8 H 0.144 0.856 9 N -0.202 5.202 10 C 0.259 3.741 11 O -0.459 6.459 12 C -0.116 4.116 13 C -0.078 4.078 14 C -0.158 4.158 15 C -0.050 4.050 16 C -0.753 4.753 17 S 2.677 3.323 18 O -0.931 6.931 19 O -0.922 6.922 20 C -0.692 4.692 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.121 4.121 27 C -0.001 4.001 28 H 0.090 0.910 29 H 0.206 0.794 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 23.457 -9.217 -5.438 25.783 hybrid contribution 0.110 2.192 -0.622 2.281 sum 23.567 -7.025 -6.061 25.328 Atomic orbital electron populations 1.69596 1.05774 1.28187 1.46261 1.25150 0.95617 0.98313 0.97124 0.86679 0.79968 0.83677 0.79286 1.19099 1.19555 1.19330 1.19582 0.79082 0.97061 1.47044 0.85620 1.42214 1.07743 1.06321 1.63958 1.17460 0.85437 0.84760 0.86480 1.90666 1.68784 1.30529 1.55920 1.20482 0.95261 0.93469 1.02416 1.21706 0.94667 0.97803 0.93632 1.21154 0.94056 0.98263 1.02309 1.20935 0.99937 0.91091 0.93032 1.30424 1.05859 1.18949 1.20067 1.05586 0.74752 0.74565 0.77378 1.93548 1.43232 1.83800 1.72535 1.93595 1.64679 1.61560 1.72400 1.29360 1.10241 1.03925 1.25647 1.18989 0.93740 0.92271 1.04661 1.21198 0.93092 0.99238 0.98806 1.21185 1.00253 0.92252 1.00093 1.21306 0.94520 0.98295 0.98884 1.21220 0.94457 0.98155 0.99739 1.21283 1.00867 0.91808 0.98182 1.21026 0.91074 0.99503 0.88522 0.91045 0.79438 0.85320 0.84817 0.84241 0.83312 0.83624 0.85076 0.85389 0.85593 0.85254 0.84764 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.95 13.95 55.50 0.77 -23.17 16 2 C 0.04 1.15 5.50 -17.45 -0.10 1.05 16 3 Si 0.88 18.29 27.74 -169.99 -4.72 13.58 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.05 6.52 56.52 0.37 -4.68 16 7 C -0.30 -8.20 10.16 -15.00 -0.15 -8.36 16 8 H 0.13 3.93 7.38 -52.49 -0.39 3.54 16 9 N -0.57 -13.37 5.03 -11.87 -0.06 -13.43 16 10 C 0.47 11.03 7.72 -12.39 -0.10 10.94 16 11 O -0.57 -15.67 15.92 5.29 0.08 -15.59 16 12 C -0.11 -2.07 5.87 -104.97 -0.62 -2.68 16 13 C -0.06 -0.88 9.54 -39.17 -0.37 -1.25 16 14 C -0.14 -1.68 10.03 -39.64 -0.40 -2.08 16 15 C -0.03 -0.36 9.47 -39.48 -0.37 -0.74 16 16 C -0.67 -9.17 5.65 -39.64 -0.22 -9.40 16 17 S 2.50 31.11 5.14 -107.50 -0.55 30.56 16 18 O -0.93 -13.08 17.12 -57.54 -0.99 -14.06 16 19 O -0.93 -14.73 17.12 -57.54 -0.98 -15.72 16 20 C -0.56 -4.87 6.11 36.00 0.22 -4.65 16 21 C -0.10 -0.93 5.14 -104.63 -0.54 -1.46 16 22 C -0.10 -0.92 9.70 -39.59 -0.38 -1.30 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 24 C -0.11 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.10 -0.99 9.70 -39.59 -0.38 -1.37 16 27 C 0.02 0.32 9.02 -39.17 -0.35 -0.03 16 28 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.37 7.57 3.79 -40.82 -0.15 7.42 16 30 H 0.13 1.75 6.41 -52.49 -0.34 1.41 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 1.28 7.56 -52.49 -0.40 0.89 16 33 H 0.15 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.15 0.83 8.08 -51.92 -0.42 0.41 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.15 2.67 7.16 -52.48 -0.38 2.30 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -36.24 361.63 -10.15 -46.38 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.20 Total: 11.26 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -4.96 Total: -25.26 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.71 Total: -36.60 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.89 Total: -45.37 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.72 Total: 13.58 kcal Atomic # 16 Polarization: 31.11 SS G_CDS: -0.55 Total: 30.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.24 -10.15 -46.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069811098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.202 kcal (2) G-P(sol) polarization free energy of solvation -36.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds