Wall clock time and date at job start Tue Mar 31 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99691 * 2 1 4 4 H 1.48504 * 109.46730 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46865 * 299.99940 * 3 2 1 6 6 H 1.48497 * 109.47555 * 60.00234 * 3 2 1 7 7 C 1.38810 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99722 * 197.71019 * 7 2 1 9 9 N 1.36932 * 119.99994 * 17.70548 * 7 2 1 10 10 C 1.46502 * 120.00138 * 20.06271 * 9 7 2 11 11 C 1.50702 * 109.47047 * 263.79519 * 10 9 7 12 12 O 1.21282 * 119.99908 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.39976 * 119.99842 * 184.88390 * 13 11 10 15 15 C 1.38864 * 120.05359 * 213.60220 * 14 13 11 16 16 C 1.38105 * 119.94004 * 179.78942 * 15 14 13 17 17 C 1.38382 * 120.05954 * 0.48608 * 16 15 14 18 18 Cl 1.73593 * 119.94521 * 179.72161 * 17 16 15 19 19 C 1.38383 * 120.11252 * 359.74926 * 17 16 15 20 20 C 1.38111 * 120.06096 * 0.02562 * 19 17 16 21 21 C 1.46505 * 119.99975 * 200.06089 * 9 7 2 22 22 C 1.50696 * 109.46981 * 269.99947 * 21 9 7 23 23 C 1.38668 * 120.42283 * 270.24865 * 22 21 9 24 24 C 1.38629 * 118.42170 * 180.24456 * 23 22 21 25 25 C 1.38227 * 119.16072 * 359.75550 * 24 23 22 26 26 N 1.31845 * 120.76327 * 359.97438 * 25 24 23 27 27 C 1.31887 * 121.72883 * 0.02562 * 26 25 24 28 28 H 0.97001 * 120.00054 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47065 * 23.79642 * 10 9 7 30 30 H 1.09005 * 109.47125 * 143.79956 * 10 9 7 31 31 H 0.97001 * 119.99657 * 4.87456 * 13 11 10 32 32 H 1.08008 * 120.02730 * 0.02562 * 15 14 13 33 33 H 1.08006 * 119.97245 * 180.23524 * 16 15 14 34 34 H 1.07999 * 119.97390 * 180.02562 * 19 17 16 35 35 H 1.07999 * 120.03253 * 179.97438 * 20 19 17 36 36 H 1.09006 * 109.46816 * 150.00188 * 21 9 7 37 37 H 1.08997 * 109.46761 * 30.00489 * 21 9 7 38 38 H 1.08004 * 120.78705 * 359.97438 * 23 22 21 39 39 H 1.08001 * 120.41791 * 179.73270 * 24 23 22 40 40 H 1.07998 * 119.61458 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.61589 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0519 -1.2244 0.2840 9 7 1.3743 -2.3597 -0.3617 10 6 0.1410 -2.3026 -1.1504 11 6 -1.0487 -2.3906 -0.2296 12 8 -0.8828 -2.4917 0.9675 13 7 -2.2971 -2.3581 -0.7366 14 6 -3.4013 -2.3367 0.1233 15 6 -4.5805 -2.9720 -0.2430 16 6 -5.6672 -2.9531 0.6091 17 6 -5.5849 -2.2933 1.8227 18 17 -6.9550 -2.2653 2.8884 19 6 -4.4126 -1.6553 2.1880 20 6 -3.3214 -1.6751 1.3416 21 6 1.9271 -3.6555 0.0406 22 6 2.8802 -4.1457 -1.0187 23 6 2.4215 -4.9265 -2.0689 24 6 3.3352 -5.3592 -3.0175 25 6 4.6627 -4.9961 -2.8887 26 7 5.0623 -4.2477 -1.8796 27 6 4.2213 -3.8182 -0.9589 28 1 -0.4850 0.8401 0.0004 29 1 0.1053 -1.3628 -1.7014 30 1 0.1197 -3.1363 -1.8523 31 1 -2.4303 -2.3494 -1.6974 32 1 -4.6465 -3.4837 -1.1919 33 1 -6.5833 -3.4503 0.3264 34 1 -4.3507 -1.1414 3.1359 35 1 -2.4068 -1.1766 1.6270 36 1 1.1167 -4.3745 0.1612 37 1 2.4591 -3.5458 0.9856 38 1 1.3780 -5.1950 -2.1436 39 1 3.0139 -5.9724 -3.8464 40 1 5.3807 -5.3287 -3.6238 41 1 4.5858 -3.2071 -0.1464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069812379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:15 Heat of formation + Delta-G solvation = 51.852210 kcal Electronic energy + Delta-G solvation = -27039.415453 eV Core-core repulsion = 23139.171608 eV Total energy + Delta-G solvation = -3900.243845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.85214 -39.65957 -37.98328 -36.32477 -35.55589 -33.73943 -32.65772 -31.57360 -30.79918 -30.50404 -29.25719 -26.98962 -25.90960 -23.19833 -22.99505 -22.70726 -21.96544 -20.80815 -19.56331 -17.58895 -17.02297 -16.69236 -16.15709 -16.08069 -15.76376 -15.35611 -14.90767 -14.62819 -14.14262 -13.89227 -13.74436 -13.42005 -13.29302 -13.23088 -12.98839 -12.89137 -12.71367 -12.57672 -11.95813 -11.62802 -11.57545 -11.29988 -11.26637 -11.08018 -10.78957 -10.65031 -10.60255 -10.15795 -10.14534 -9.54392 -9.44325 -9.19747 -9.01368 -8.79836 -8.55674 -8.49318 -7.56301 -7.05922 -5.99471 -3.36519 1.41871 1.51535 1.56992 1.66463 2.33430 3.29361 3.38929 3.40668 3.65751 3.83053 4.15269 4.19869 4.43335 4.81027 5.00865 5.08804 5.11398 5.21030 5.31851 5.34165 5.41942 5.51586 5.52707 5.62990 5.75625 5.81354 5.96664 6.10448 6.18976 6.25065 6.27801 6.34909 6.43103 6.54306 6.62601 6.76193 6.79776 6.84007 6.89887 7.11144 7.43598 7.62481 8.05553 8.23353 8.34553 8.95494 9.32552 9.61213 10.05031 11.10610 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.012355 B = 0.002995 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.656177 B = 9347.514435 C =11007.761425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.253 4.253 8 H 0.077 0.923 9 N -0.560 5.560 10 C 0.168 3.832 11 C 0.525 3.475 12 O -0.503 6.503 13 N -0.691 5.691 14 C 0.183 3.817 15 C -0.156 4.156 16 C -0.094 4.094 17 C -0.067 4.067 18 Cl -0.090 7.090 19 C -0.092 4.092 20 C -0.106 4.106 21 C 0.185 3.815 22 C -0.127 4.127 23 C -0.075 4.075 24 C -0.178 4.178 25 C 0.077 3.923 26 N -0.491 5.491 27 C 0.112 3.888 28 H 0.255 0.745 29 H 0.106 0.894 30 H 0.037 0.963 31 H 0.400 0.600 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -8.171 -4.724 11.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.738 3.262 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.095 0.905 9 N -0.277 5.277 10 C 0.037 3.963 11 C 0.312 3.688 12 O -0.374 6.374 13 N -0.337 5.337 14 C 0.086 3.914 15 C -0.178 4.178 16 C -0.114 4.114 17 C -0.095 4.095 18 Cl -0.062 7.062 19 C -0.112 4.112 20 C -0.126 4.126 21 C 0.057 3.943 22 C -0.132 4.132 23 C -0.101 4.101 24 C -0.198 4.198 25 C -0.080 4.080 26 N -0.199 5.199 27 C -0.045 4.045 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.055 0.945 31 H 0.234 0.766 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.173 0.827 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.808 -7.828 -3.680 10.419 hybrid contribution -0.936 0.878 -0.479 1.370 sum -6.744 -6.950 -4.159 10.539 Atomic orbital electron populations 1.69776 1.05054 1.25450 1.54350 1.24832 0.95318 0.98280 1.00685 0.86137 0.79369 0.83534 0.77207 1.20217 1.21632 1.21769 1.19255 0.93445 0.84131 1.41361 0.90526 1.43663 1.23404 1.00853 1.59791 1.20509 0.83703 1.00943 0.91135 1.22463 0.82792 0.72259 0.91273 1.90539 1.84634 1.45880 1.16349 1.44199 1.05148 1.75424 1.08899 1.17985 0.87488 0.93721 0.92182 1.20809 0.93139 1.02616 1.01206 1.20665 0.98879 0.99398 0.92434 1.20758 0.89390 1.05839 0.93496 1.98326 1.44254 1.97801 1.65807 1.20951 0.91092 0.98948 1.00178 1.21437 0.99378 0.98145 0.93684 1.19719 0.93659 0.88031 0.92842 1.22105 0.96792 0.95479 0.98783 1.21445 0.99524 0.95786 0.93380 1.22023 0.94985 1.02476 1.00347 1.22557 0.94259 0.95384 0.95778 1.67635 1.39319 1.10189 1.02787 1.22655 0.89636 0.95793 0.96435 0.93470 0.87578 0.94489 0.76591 0.85422 0.85439 0.85352 0.82666 0.93160 0.91651 0.85683 0.85673 0.83735 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.01 9.09 55.49 0.50 -22.51 16 2 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16 3 Si 0.91 20.66 29.59 -169.99 -5.03 15.63 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.24 9.66 -15.06 -0.15 -6.39 16 8 H 0.08 1.88 7.89 -52.48 -0.41 1.47 16 9 N -0.56 -12.25 2.01 -175.98 -0.35 -12.61 16 10 C 0.17 3.37 5.37 -5.19 -0.03 3.34 16 11 C 0.52 10.73 5.71 -10.98 -0.06 10.66 16 12 O -0.50 -12.25 13.71 5.56 0.08 -12.17 16 13 N -0.69 -11.47 5.34 -9.85 -0.05 -11.52 16 14 C 0.18 3.04 6.27 -83.68 -0.52 2.52 16 15 C -0.16 -2.10 9.96 -39.40 -0.39 -2.49 16 16 C -0.09 -1.23 9.82 -39.58 -0.39 -1.62 16 17 C -0.07 -0.96 6.32 -39.47 -0.25 -1.21 16 18 Cl -0.09 -1.15 28.95 -51.86 -1.50 -2.65 16 19 C -0.09 -1.46 9.82 -39.57 -0.39 -1.85 16 20 C -0.11 -1.94 8.66 -39.40 -0.34 -2.28 16 21 C 0.19 3.49 5.78 -5.19 -0.03 3.46 16 22 C -0.13 -2.13 5.48 -104.48 -0.57 -2.70 16 23 C -0.07 -1.08 9.86 -39.28 -0.39 -1.47 16 24 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 25 C 0.08 1.08 11.18 -17.55 -0.20 0.89 16 26 N -0.49 -8.23 10.36 -13.25 -0.14 -8.36 16 27 C 0.11 1.93 10.86 -17.55 -0.19 1.74 16 28 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.11 2.33 6.49 -51.93 -0.34 1.99 16 30 H 0.04 0.63 8.12 -51.93 -0.42 0.20 16 31 H 0.40 5.26 8.82 -40.82 -0.36 4.90 16 32 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 33 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.16 3.43 6.45 -52.49 -0.34 3.09 16 36 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 37 H 0.07 1.26 7.99 -51.93 -0.41 0.85 16 38 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.15 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -29.39 368.68 -10.12 -39.51 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.80 Total: 9.16 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -4.38 Total: -0.03 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.04 Total: -55.00 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.39 -10.12 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069812379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.360 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds