Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37928 * 119.92489 * 2 1 4 4 C 1.39646 * 119.84950 * 180.02562 * 3 2 1 5 5 C 1.47700 * 120.14240 * 179.97438 * 4 3 2 6 6 O 1.21599 * 119.99767 * 317.29447 * 5 4 3 7 7 N 1.34775 * 120.00221 * 137.29884 * 5 4 3 8 8 C 1.46507 * 119.99648 * 3.35587 * 7 5 4 9 9 C 1.36867 * 120.00205 * 183.36349 * 7 5 4 10 10 H 1.07999 * 120.00192 * 18.85362 * 9 7 5 11 11 C 1.39053 * 120.00074 * 198.85301 * 9 7 5 12 12 N 1.31361 * 119.99816 * 18.70024 * 11 9 7 13 13 Si 1.86795 * 119.99941 * 198.70121 * 11 9 7 14 14 H 1.48500 * 109.47558 * 90.00055 * 13 11 9 15 15 H 1.48510 * 109.46976 * 210.00240 * 13 11 9 16 16 H 1.48501 * 109.47331 * 329.99777 * 13 11 9 17 17 C 1.39691 * 119.71642 * 0.02562 * 4 3 2 18 18 C 1.37878 * 119.84753 * 359.97438 * 17 4 3 19 19 C 1.38433 * 119.92809 * 179.97438 * 2 1 3 20 20 I 2.09499 * 119.85195 * 359.71915 * 19 2 1 21 21 H 1.09001 * 109.47105 * 270.01778 * 1 2 3 22 22 H 1.09001 * 109.47542 * 30.02119 * 1 2 3 23 23 H 1.09004 * 109.47287 * 150.01872 * 1 2 3 24 24 H 1.07995 * 120.07178 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.46375 * 92.35272 * 8 7 5 26 26 H 1.08995 * 109.46713 * 212.34957 * 8 7 5 27 27 H 1.08993 * 109.47449 * 332.35200 * 8 7 5 28 28 H 0.96996 * 120.00215 * 179.97438 * 12 11 9 29 29 H 1.07998 * 120.07457 * 179.97438 * 17 4 3 30 30 H 1.08005 * 119.92816 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1954 0.0000 4 6 3.5915 1.1936 -0.0005 5 6 4.3349 2.4699 -0.0011 6 8 3.9719 3.3845 -0.7154 7 7 5.4156 2.6207 0.7900 8 6 5.8967 1.4952 1.5952 9 6 6.0634 3.8252 0.8412 10 1 5.5626 4.7224 0.5085 11 6 7.3665 3.8939 1.3218 12 7 8.1033 2.8080 1.3796 13 14 8.0691 5.5305 1.8850 14 1 7.7900 5.7176 3.3315 15 1 9.5367 5.5434 1.6583 16 1 7.4394 6.6316 1.1129 17 6 4.2824 -0.0206 -0.0016 18 6 3.5824 -1.2084 -0.0016 19 6 2.1976 -1.1997 0.0005 20 53 1.1432 -3.0100 0.0103 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5136 24 1 1.6550 2.1306 -0.0004 25 1 6.6546 0.9465 1.0361 26 1 6.3298 1.8708 2.5222 27 1 5.0637 0.8314 1.8261 28 1 9.0123 2.8559 1.7144 29 1 5.3623 -0.0287 -0.0025 30 1 4.1152 -2.1479 -0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069870457.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = 13.212294 kcal Electronic energy + Delta-G solvation = -15990.425869 eV Core-core repulsion = 13224.360458 eV Total energy + Delta-G solvation = -2766.065411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 344.997 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75045 -37.87652 -34.81901 -33.20327 -31.79725 -31.54482 -28.20147 -27.16435 -25.98074 -24.78090 -22.34166 -21.47676 -19.16532 -17.09370 -16.28511 -15.55247 -15.26903 -14.89285 -14.24635 -13.94220 -13.82665 -13.64755 -12.94636 -12.59898 -12.22774 -12.08589 -11.78651 -11.61971 -11.38612 -11.01214 -10.92090 -10.74067 -10.44967 -10.41417 -10.11075 -9.74159 -9.14478 -8.70060 -8.57682 -8.31783 -7.85175 -6.48965 -3.95079 1.13104 1.19953 1.52603 3.08887 3.19356 3.24475 3.52321 4.01952 4.15891 4.67566 4.90964 4.94508 5.04832 5.32552 5.50516 5.54397 5.60644 5.72927 5.76111 6.01686 6.18048 6.26002 6.40604 6.50278 6.72776 6.74283 6.99929 7.07583 7.44184 7.97967 8.34855 9.04958 9.26943 9.85115 10.54837 Molecular weight = 345.00amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.003194 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.789408 B = 8765.533438 C = 9278.034215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.062 4.062 3 C -0.079 4.079 4 C -0.064 4.064 5 C 0.466 3.534 6 O -0.587 6.587 7 N -0.425 5.425 8 C 0.102 3.898 9 C -0.308 4.308 10 H 0.104 0.896 11 C 0.034 3.966 12 N -0.869 5.869 13 Si 0.927 3.073 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.267 1.267 17 C -0.101 4.101 18 C -0.089 4.089 19 C -0.102 4.102 20 I -0.058 7.058 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.134 0.866 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.271 0.729 29 H 0.141 0.859 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.737 -15.066 0.485 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.100 4.100 4 C -0.068 4.068 5 C 0.255 3.745 6 O -0.473 6.473 7 N -0.141 5.141 8 C -0.042 4.042 9 C -0.436 4.436 10 H 0.122 0.878 11 C -0.171 4.171 12 N -0.507 5.507 13 Si 0.754 3.246 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.242 4.242 20 I 0.092 6.908 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.152 0.848 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.397 -15.924 0.232 20.811 hybrid contribution 1.295 1.645 0.355 2.123 sum -12.102 -14.279 0.587 18.727 Atomic orbital electron populations 1.21022 0.90644 1.03487 1.02913 1.19632 0.96219 0.91600 0.99050 1.21074 0.92976 0.97271 0.98678 1.20472 0.94088 0.94759 0.97520 1.17869 0.84981 0.87291 0.84393 1.90628 1.70557 1.42235 1.43868 1.43552 1.23791 1.11596 1.35183 1.21826 0.96756 0.88816 0.96804 1.19750 0.96088 0.85996 1.41771 0.87784 1.25366 0.95458 0.99080 0.97234 1.70010 1.08961 1.28695 1.42985 0.85902 0.77847 0.81702 0.79194 1.20166 1.20821 1.19144 1.21662 1.01024 0.90932 0.98552 1.20938 0.92022 0.98616 0.99420 1.24129 0.95647 0.93992 1.10481 1.96599 1.74065 1.21400 1.98758 0.90658 0.90852 0.90854 0.84841 0.91937 0.91372 0.94329 0.91880 0.84135 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.47 36.01 0.34 -1.08 16 2 C -0.06 -0.91 5.88 -104.66 -0.61 -1.52 16 3 C -0.08 -1.38 9.32 -39.17 -0.36 -1.74 16 4 C -0.06 -1.28 5.10 -104.96 -0.53 -1.81 16 5 C 0.47 11.57 7.26 -12.40 -0.09 11.48 16 6 O -0.59 -16.61 16.64 5.28 0.09 -16.52 16 7 N -0.43 -10.82 3.01 -123.33 -0.37 -11.19 16 8 C 0.10 2.21 7.22 59.85 0.43 2.65 16 9 C -0.31 -8.45 9.30 -15.00 -0.14 -8.59 16 10 H 0.10 2.99 7.41 -52.49 -0.39 2.60 16 11 C 0.03 0.86 4.96 -17.45 -0.09 0.78 16 12 N -0.87 -22.36 10.82 55.50 0.60 -21.76 16 13 Si 0.93 20.09 29.59 -169.99 -5.03 15.06 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 C -0.10 -1.74 7.52 -39.17 -0.29 -2.03 16 18 C -0.09 -1.30 9.74 -39.63 -0.39 -1.69 16 19 C -0.10 -1.43 6.21 -39.42 -0.24 -1.68 16 20 I -0.06 -0.65 38.04 -73.02 -2.78 -3.43 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 23 H 0.07 0.79 6.32 -51.93 -0.33 0.46 16 24 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 25 H 0.06 1.38 6.77 -51.93 -0.35 1.03 16 26 H 0.07 1.56 7.02 -51.93 -0.36 1.19 16 27 H 0.04 0.73 5.54 -51.93 -0.29 0.44 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.14 2.42 5.92 -52.49 -0.31 2.11 16 30 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 281.01 15.07 4.23 4.23 Total: -1.00 -29.45 281.01 -8.09 -37.55 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -2.85 Total: 1.29 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.98 Total: -5.23 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.23 Total: -32.95 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.52 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Atomic # 53 Polarization: -0.65 SS G_CDS: -2.78 Total: -3.43 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.45 -8.09 -37.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069870457.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.759 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds