Wall clock time and date at job start Tue Mar 31 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 110.53374 * 2 1 4 4 C 1.38274 * 119.94183 * 271.10128 * 3 2 1 5 5 C 1.38138 * 120.05237 * 179.72927 * 4 3 2 6 6 C 1.38735 * 119.94672 * 0.56361 * 5 4 3 7 7 O 1.35903 * 120.05702 * 179.68298 * 6 5 4 8 8 C 1.42901 * 117.00087 * 0.02635 * 7 6 5 9 9 F 1.39907 * 109.46950 * 59.99659 * 8 7 6 10 10 F 1.39890 * 109.47189 * 179.97438 * 8 7 6 11 11 F 1.39901 * 109.46936 * 300.00233 * 8 7 6 12 12 C 1.38732 * 119.88819 * 359.71069 * 6 5 4 13 13 C 1.38142 * 119.94186 * 0.02562 * 12 6 5 14 14 N 1.47312 * 110.59837 * 122.82967 * 2 1 3 15 15 C 1.34521 * 106.62006 * 118.52883 * 14 2 1 16 16 O 1.21531 * 123.77091 * 179.97438 * 15 14 2 17 17 N 1.33789 * 112.46026 * 359.97438 * 15 14 2 18 18 C 1.37516 * 124.18235 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00160 * 145.44845 * 18 17 15 20 20 C 1.38900 * 119.99583 * 325.17644 * 18 17 15 21 21 N 1.31377 * 120.00136 * 339.85361 * 20 18 17 22 22 Si 1.86795 * 119.99690 * 159.85783 * 20 18 17 23 23 H 1.48504 * 109.47373 * 84.98979 * 22 20 18 24 24 H 1.48497 * 109.47202 * 204.99006 * 22 20 18 25 25 H 1.48504 * 109.47221 * 324.99091 * 22 20 18 26 26 C 1.34768 * 111.64186 * 0.23461 * 17 15 14 27 27 O 1.21230 * 127.15600 * 179.73333 * 26 17 15 28 28 H 1.09004 * 109.47209 * 297.87277 * 1 2 3 29 29 H 1.09006 * 109.47177 * 57.87117 * 1 2 3 30 30 H 1.09002 * 109.47486 * 177.87392 * 1 2 3 31 31 H 1.08001 * 119.97162 * 359.97438 * 4 3 2 32 32 H 1.08007 * 120.03015 * 180.29583 * 5 4 3 33 33 H 1.07993 * 120.02820 * 179.97438 * 12 6 5 34 34 H 1.08004 * 119.97269 * 180.02562 * 13 12 6 35 35 H 0.97001 * 126.68868 * 298.48410 * 14 2 1 36 36 H 0.96996 * 119.99952 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.2791 2.0656 -1.1980 5 6 2.7583 3.3612 -1.2005 6 6 3.0294 4.0017 -0.0001 7 8 3.5070 5.2741 -0.0002 8 6 3.7059 5.8923 -1.2731 9 9 2.4883 5.9477 -1.9600 10 9 4.1969 7.1894 -1.0899 11 9 4.6265 5.1451 -2.0156 12 6 2.8127 3.3410 1.2003 13 6 2.3282 2.0473 1.1977 14 7 2.0482 -0.7476 1.1587 15 6 2.7599 -1.7770 0.6654 16 8 3.3290 -2.5980 1.3575 17 7 2.7711 -1.7961 -0.6723 18 6 3.4253 -2.7422 -1.4261 19 1 3.0051 -3.0691 -2.3657 20 6 4.6293 -3.2732 -0.9815 21 7 5.3410 -2.6276 -0.0855 22 14 5.2367 -4.9050 -1.6578 23 1 5.9714 -4.6722 -2.9272 24 1 6.1442 -5.5430 -0.6705 25 1 4.0775 -5.7973 -1.9133 26 6 2.0668 -0.7704 -1.1900 27 8 1.8969 -0.5171 -2.3633 28 1 -0.3634 0.4805 0.9085 29 1 -0.3634 0.5466 -0.8703 30 1 -0.3634 -1.0270 -0.0381 31 1 2.0727 1.5648 -2.1323 32 1 2.9258 3.8737 -2.1364 33 1 3.0233 3.8373 2.1361 34 1 2.1589 1.5326 2.1320 35 1 1.9049 -0.5380 2.0949 36 1 6.1816 -2.9986 0.2252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071186294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:11 Heat of formation + Delta-G solvation = -192.133922 kcal Electronic energy + Delta-G solvation = -30698.893967 eV Core-core repulsion = 25735.097001 eV Total energy + Delta-G solvation = -4963.796966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.59638 -48.33674 -48.17288 -41.57322 -40.17207 -37.98566 -37.13248 -35.23776 -34.22371 -32.02060 -31.23006 -30.47660 -29.02176 -26.24283 -25.86395 -23.90939 -23.10938 -22.31412 -21.33113 -19.88861 -19.68924 -19.29974 -19.14848 -17.57257 -17.02446 -16.54113 -16.37054 -15.49662 -15.35521 -15.22995 -15.02325 -14.77454 -14.67255 -14.62600 -14.55601 -14.40082 -14.28681 -14.12825 -13.85086 -13.78661 -13.38591 -13.34173 -13.17722 -12.63641 -12.46232 -12.12839 -11.92909 -11.71785 -11.39635 -11.14114 -11.05267 -10.88262 -10.43670 -9.63903 -9.24546 -9.09058 -8.96476 -8.68152 -8.41111 -8.04425 -6.45259 -4.23153 1.10693 1.28047 1.33851 2.68186 2.71847 3.19287 3.26007 3.29938 3.46813 3.57801 3.62010 3.85783 4.08504 4.39646 4.46186 4.60221 4.63303 4.70705 4.98068 5.09679 5.18946 5.25782 5.37218 5.47198 5.72294 5.77015 5.93115 6.03198 6.15083 6.21999 6.34503 6.50227 6.62805 6.88257 7.40025 7.67451 7.87488 8.05903 8.71312 8.89098 9.17679 9.79424 10.63439 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003363 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.930138 B = 8324.719122 C = 8894.662113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.161 3.839 3 C -0.090 4.090 4 C -0.062 4.062 5 C -0.187 4.187 6 C 0.098 3.902 7 O -0.312 6.312 8 C 0.603 3.397 9 F -0.166 7.166 10 F -0.135 7.135 11 F -0.163 7.163 12 C -0.125 4.125 13 C -0.064 4.064 14 N -0.743 5.743 15 C 0.687 3.313 16 O -0.517 6.517 17 N -0.393 5.393 18 C -0.369 4.369 19 H 0.105 0.895 20 C 0.068 3.932 21 N -0.817 5.817 22 Si 0.927 3.073 23 H -0.275 1.275 24 H -0.280 1.280 25 H -0.266 1.266 26 C 0.487 3.513 27 O -0.511 6.511 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.421 0.579 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 15.331 2.077 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.069 3.931 3 C -0.091 4.091 4 C -0.080 4.080 5 C -0.205 4.205 6 C 0.057 3.943 7 O -0.232 6.232 8 C 0.512 3.488 9 F -0.148 7.148 10 F -0.117 7.117 11 F -0.145 7.145 12 C -0.143 4.143 13 C -0.082 4.082 14 N -0.409 5.409 15 C 0.389 3.611 16 O -0.388 6.388 17 N -0.124 5.124 18 C -0.494 4.494 19 H 0.123 0.877 20 C -0.145 4.145 21 N -0.447 5.447 22 Si 0.752 3.248 23 H -0.200 1.200 24 H -0.206 1.206 25 H -0.191 1.191 26 C 0.275 3.725 27 O -0.389 6.389 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.172 0.828 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.264 0.736 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.128 14.997 2.024 16.326 hybrid contribution 0.538 -0.306 -0.043 0.620 sum -5.590 14.690 1.982 15.842 Atomic orbital electron populations 1.21919 0.90918 1.03407 1.03242 1.20051 0.95820 0.89409 0.87780 1.19667 1.01202 0.94539 0.93716 1.21313 0.94258 0.92800 0.99601 1.21478 1.05362 0.97440 0.96240 1.18728 0.98865 0.80975 0.95778 1.86380 1.81048 1.29059 1.26715 1.19359 0.75025 0.76608 0.77781 1.93302 1.45181 1.96138 1.80137 1.93290 1.87672 1.35621 1.95072 1.93328 1.67232 1.76565 1.77358 1.20279 1.03722 0.94768 0.95553 1.20702 0.96687 0.92820 0.97994 1.45656 1.57515 1.30507 1.07258 1.16062 0.79755 0.82055 0.83178 1.90845 1.45667 1.41209 1.61060 1.41741 1.42214 1.22938 1.05480 1.19261 1.04494 1.18993 1.06622 0.87723 1.25327 0.94639 0.98866 0.95657 1.69907 1.11576 1.36270 1.26973 0.85984 0.78794 0.81656 0.78326 1.20045 1.20566 1.19066 1.20364 0.82359 0.81070 0.88674 1.90544 1.61600 1.70107 1.16605 0.91245 0.90435 0.91222 0.82756 0.84862 0.84388 0.84678 0.73633 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.97 37.16 0.33 -1.49 16 2 C 0.16 2.77 1.16 -133.25 -0.16 2.62 16 3 C -0.09 -1.41 4.88 -104.60 -0.51 -1.92 16 4 C -0.06 -0.99 9.17 -39.60 -0.36 -1.35 16 5 C -0.19 -2.69 8.26 -39.43 -0.33 -3.01 16 6 C 0.10 1.33 6.48 -39.22 -0.25 1.08 16 7 O -0.31 -3.90 10.37 -19.44 -0.20 -4.10 16 8 C 0.60 6.83 3.42 101.05 0.35 7.18 16 9 F -0.17 -1.83 15.56 2.25 0.04 -1.79 16 10 F -0.14 -1.40 17.53 2.25 0.04 -1.36 16 11 F -0.16 -2.00 15.56 2.25 0.04 -1.96 16 12 C -0.12 -1.55 9.99 -39.43 -0.39 -1.95 16 13 C -0.06 -0.84 9.34 -39.61 -0.37 -1.21 16 14 N -0.74 -13.41 5.29 -54.03 -0.29 -13.70 16 15 C 0.69 16.80 7.95 -88.03 -0.70 16.10 16 16 O -0.52 -14.42 15.16 5.34 0.08 -14.34 16 17 N -0.39 -10.13 2.68 -65.57 -0.18 -10.31 16 18 C -0.37 -10.23 9.56 -14.76 -0.14 -10.38 16 19 H 0.11 2.84 7.91 -52.49 -0.42 2.42 16 20 C 0.07 1.88 4.69 -17.50 -0.08 1.79 16 21 N -0.82 -23.50 11.30 55.49 0.63 -22.87 16 22 Si 0.93 21.01 29.60 -169.99 -5.03 15.98 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C 0.49 10.98 6.47 -10.56 -0.07 10.92 16 27 O -0.51 -12.10 15.71 5.60 0.09 -12.01 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.15 2.69 5.76 -52.49 -0.30 2.39 16 32 H 0.13 1.76 5.10 -52.48 -0.27 1.49 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.14 1.46 6.94 -52.48 -0.36 1.10 16 35 H 0.42 6.06 8.09 -40.82 -0.33 5.73 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -32.59 325.02 -5.08 -37.67 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -2.50 Total: 5.51 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: -2.68 Total: 18.38 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.17 Total: -46.88 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.03 Total: -30.45 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.59 -5.08 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071186294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.464 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds